Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Reverse (-)

55800935 .. 55801668

Gene Structure 734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019707

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTGAATCACATAGCAGCTGGTATTGAGTGGAATCCAACTGTTGATCAGACTGACCTTTTTATATTTGTACATGGCCTGATTGAAGATGGAATAAAAGAAGAAAATGGGAATAAGTGCTTGAATTCCAAGTATGAAGATGTCTTATCTGCAACACTTGGATGCCTAACTTCGTTGGTCAGTTCTCTAATGGAGTCATGTCTGAGGTTGTTTACTTTACATTTGCGGGGCAACAAAGTTACTCTTTCCTCCGATCATCTACATCTATTGATTCATGAGCTTCCAGTGTTTGTTGACATTGAAAGGGACCCCTCGTTTATTGCTCTTTCACTTCTGAAGGCAATTGTTAAACGCAAGCTAGTTGTTCCAGAGATATATGATCTTGTTACTAGAGTTGCAGAATTGATGGCAACAAGTCGATTGTCACAAATTAATGTAGTCAGATTCTGTCTCACTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRIM

Protein Analysis

154

Amino Acids

17.14

Weight (kDa)

5.83

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	1 cut(s)	72
AgsI	TTSAA	4 cut(s)	7, 86, 124, 302
AluBI	AGCT	3 cut(s)	20, 280, 358
AluI	AGCT	3 cut(s)	20, 280, 358
Alw26I	GTCTC	1 cut(s)	455
AlwNI	CAGNNNCTG	1 cut(s)	447
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	124
AseI	ATTAAT	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	2 cut(s)	83, 400
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	2 cut(s)	359, 390
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	2 cut(s)	308, 309
BmsI	GCATC	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	284
BseGI	GGATG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	29
BshFI	GGCC	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	78
Bsp1407I	TGTACA	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	46, 253, 379
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	308, 309
BsrGI	TGTACA	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	284
BssMI	GATC	3 cut(s)	46, 253, 379
Bst4CI	ACNGT	1 cut(s)	43
BstAUI	TGTACA	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	167
BstKTI	GATC	3 cut(s)	49, 256, 382
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	3 cut(s)	46, 253, 379
BstV1I	GCAGC	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	356
CaiI	CAGNNNCTG	1 cut(s)	447
CciI	TCATGA	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	3 cut(s)	74, 198, 275
CviJI	RGCY	4 cut(s)	20, 78, 280, 358
CviKI_1	RGCY	4 cut(s)	20, 78, 280, 358
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	3 cut(s)	48, 255, 381
DpnII	GATC	3 cut(s)	46, 253, 379
Eco47I	GGWCC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	124
FaeI	CATG	3 cut(s)	77, 201, 278
FaiI	YATR	8 cut(s)	14, 65, 75, 135, 199, 276, 376, 378
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	3 cut(s)	73, 197, 274
FauI	CCCGC	1 cut(s)	219
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	2 cut(s)	359, 390
GluI	GCNGC	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	78
Hin1II	CATG	3 cut(s)	77, 201, 278
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	5 cut(s)	7, 34, 194, 271, 444
Hpy166II	GTNNAC	2 cut(s)	213, 295
Hpy188I	TCNGA	5 cut(s)	51, 204, 253, 336, 443
Hpy188III	TCNNGA	2 cut(s)	275, 368
Hpy8I	GTNNAC	2 cut(s)	213, 295
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	2 cut(s)	152, 398
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	77, 201, 278
KflI	GGGWCCC	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	46, 253, 379
LpnPI	CCDG	4 cut(s)	6, 92, 297, 381
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	2 cut(s)	359, 390
MaeIII	GTNAC	3 cut(s)	238, 385, 423
MalI	GATC	3 cut(s)	48, 255, 381
MboI	GATC	3 cut(s)	46, 253, 379
MboII	GAAGA	3 cut(s)	98, 113, 149
MfeI	CAATTG	1 cut(s)	342
MluCI	AATT	4 cut(s)	124, 342, 401, 429
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	3 cut(s)	198, 259, 322
MseI	TTAA	3 cut(s)	348, 432, 460
MslI	CAYNNNNRTG	1 cut(s)	160
MspA1I	CMGCKG	1 cut(s)	20
MunI	CAATTG	1 cut(s)	342
NdeII	GATC	3 cut(s)	46, 253, 379
NlaIII	CATG	3 cut(s)	77, 201, 278
NlaIV	GGNNCC	2 cut(s)	308, 309
NmuCI	GTSAC	1 cut(s)	423
PagI	TCATGA	1 cut(s)	274
PfeI	GAWTC	4 cut(s)	7, 34, 271, 444
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	307
PshBI	ATTAAT	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	308, 309
PspPI	GGNCC	1 cut(s)	307
PspPPI	RGGWCCY	1 cut(s)	307
PstNI	CAGNNNCTG	1 cut(s)	447
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	3 cut(s)	348, 432, 460
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	3 cut(s)	46, 253, 379
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	203
SetI	ASST	5 cut(s)	22, 60, 209, 282, 360
SfaNI	GCATC	1 cut(s)	152
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	160
Sse9I	AATT	4 cut(s)	124, 342, 401, 429
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	2 cut(s)	359, 390
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	418
TasI	AATT	4 cut(s)	124, 342, 401, 429
TatI	WGTACW	1 cut(s)	70
TfiI	GAWTC	4 cut(s)	7, 34, 271, 444
Tru1I	TTAA	3 cut(s)	348, 432, 460
Tru9I	TTAA	3 cut(s)	348, 432, 460
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	423
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	423
TspDTI	ATGAA	2 cut(s)	150, 263
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	307
VspI	ATTAAT	1 cut(s)	432
XapI	RAATTY	1 cut(s)	124
XspI	CTAG	2 cut(s)	359, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.