Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Forward (+)

36887146 .. 36888774

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44241.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCCTTTCATGGTTGGGGTCCTGAGGATCCTAACAAGTGGTATCAGAGCCCACATCTAGGCCTGATTCCGGCAGGATACGGCGGAGGGGTTGCTGGAAATTGTTACGATCACTCTTTGGTCGAAGCCTCTTATCATCCTGTGACCAATTTCACACCACCGCTGCATTTCACACAGCCAAACTGTTACCCACCACCAAGCCCTGAAATAAGCTCTGAATTTGTGGCATCTGATATTTCGACATCTACTGATGAGATTTTGAGTTTGCATAATGATATCAGTGTTGTTGTGGTATCTGGAAGCAATTGTGAGGATGGTATTTCTATTGGCATGATTGATAAATTGAATCCTGTGAGTAATAAGATAGGTGCTAGCATTGAAAATAGAGAGTCTGAGGCTGAAAGTACTGAAGGGGTGAATGATGGTCAATCACGTTATTCCCAACTCACTAACTTTGGTAATGTATTACCTGTTGGGAGCACACATCTTCATTCTACGGTTCACAGTTCCGTGGGTGTTGGCAATGGATTATTGAATGTTAATCTTGGTGAGGAAAATATGTATGTGGAACACAGCTTTGCAAAATTGCAAGTGAATATTGAAATGGAGCTGGACAAAATATGGAAATCAAAGGTTCATGTCAAATGTGGAAGTGAATGGAACACAAAAGAATGTGATTCTACTGTTAAAGAAGAGCTCAAGCTTGACAATGAGATGCATGATACTGTTGATGACAAAGGTGGAGGACTTGCTACTCATCGTGTAATTGTTGATGCTTCCCTTATGTCAACTGAAATCTTGTCATATGCTACTCGTGTTCCCATGGAAACTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

30.22

Weight (kDa)

4.76

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	84, 161
AclWI	GGATC	2 cut(s)	23, 36
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	2 cut(s)	59, 70
AgsI	TTSAA	4 cut(s)	346, 380, 535, 602
AluBI	AGCT	5 cut(s)	213, 576, 610, 697, 703
AluI	AGCT	5 cut(s)	213, 576, 610, 697, 703
Alw21I	GWGCWC	2 cut(s)	482, 699
AlwI	GGATC	2 cut(s)	23, 36
AoxI	GGCC	2 cut(s)	3, 61
ApeKI	GCWGC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	427, 560
AsuNHI	GCTAGC	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	20
AxyI	CCTNAGG	1 cut(s)	24
BamHI	GGATCC	1 cut(s)	28
BanII	GRGCYC	2 cut(s)	53, 699
BauI	CACGAG	1 cut(s)	813
Bbv12I	GWGCWC	2 cut(s)	482, 699
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	2 cut(s)	308, 416
BceAI	ACGGC	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	71
BfaI	CTAG	2 cut(s)	59, 372
BfuI	GTATCC	1 cut(s)	71
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
BmcAI	AGTACT	1 cut(s)	406
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	21, 30
BmsI	GCATC	3 cut(s)	236, 705, 763
BmtI	GCTAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	683
BsaJI	CCNNGG	2 cut(s)	510, 822
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 70
Bse21I	CCTNAGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	529
BseDI	CCNNGG	2 cut(s)	510, 822
BseGI	GGATG	2 cut(s)	136, 319
BseLI	CCNNNNNNNGG	2 cut(s)	59, 70
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	2 cut(s)	15, 384
BseXI	GCAGC	1 cut(s)	150
BshFI	GGCC	2 cut(s)	5, 63
BsiHKAI	GWGCWC	2 cut(s)	482, 699
BsiSI	CCGG	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	59, 70
BsnI	GGCC	2 cut(s)	5, 63
Bsp1286I	GDGCHC	3 cut(s)	53, 482, 699
Bsp143I	GATC	2 cut(s)	28, 109
Bsp19I	CCATGG	1 cut(s)	822
BspACI	CCGC	2 cut(s)	84, 161
BspANI	GGCC	2 cut(s)	5, 63
BspCNI	CTCAG	2 cut(s)	16, 385
BspLI	GGNNCC	2 cut(s)	21, 30
BspOI	GCTAGC	1 cut(s)	375
BspPI	GGATC	2 cut(s)	23, 36
BspQI	GCTCTTC	1 cut(s)	687
BsrDI	GCAATG	1 cut(s)	529
BssECI	CCNNGG	2 cut(s)	510, 822
BssMI	GATC	2 cut(s)	28, 109
BssSI	CACGAG	1 cut(s)	813
BssT1I	CCWWGG	1 cut(s)	822
Bst2BI	CACGAG	1 cut(s)	813
Bst4CI	ACNGT	5 cut(s)	185, 499, 506, 685, 727
Bst6I	CTCTTC	1 cut(s)	687
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	24, 393
BstDSI	CCRYGG	2 cut(s)	510, 822
BstF5I	GGATG	2 cut(s)	136, 319
BstKTI	GATC	2 cut(s)	31, 112
BstMBI	GATC	2 cut(s)	28, 109
BstV1I	GCAGC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
Bsu36I	CCTNAGG	1 cut(s)	24
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	5, 63
BtgI	CCRYGG	2 cut(s)	510, 822
BtsCI	GGATG	2 cut(s)	136, 319
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	5 cut(s)	11, 331, 638, 719, 823
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	2 cut(s)	24, 393
DpnI	GATC	2 cut(s)	30, 111
DpnII	GATC	2 cut(s)	28, 109
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
EciI	GGCGGA	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	697
Eco130I	CCWWGG	1 cut(s)	822
Eco147I	AGGCCT	1 cut(s)	63
Eco24I	GRGCYC	2 cut(s)	53, 699
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	697
Eco57I	CTGAAG	1 cut(s)	429
Eco81I	CCTNAGG	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	697
EcoO109I	RGGNCCY	1 cut(s)	20
EcoRV	GATATC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	822
EcoT22I	ATGCAT	1 cut(s)	720
EcoT38I	GRGCYC	2 cut(s)	53, 699
ErhI	CCWWGG	1 cut(s)	822
FaeI	CATG	5 cut(s)	14, 334, 641, 722, 826
FatI	CATG	5 cut(s)	10, 330, 637, 718, 822
FauNDI	CATATG	1 cut(s)	805
Fnu4HI	GCNGC	1 cut(s)	164
FokI	GGATG	2 cut(s)	123, 326
FriOI	GRGCYC	2 cut(s)	53, 699
Fsp4HI	GCNGC	1 cut(s)	164
FspBI	CTAG	2 cut(s)	59, 372
GluI	GCNGC	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	5, 63
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	5 cut(s)	14, 334, 641, 722, 826
HincII	GTYRAC	1 cut(s)	789
HindII	GTYRAC	1 cut(s)	789
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	4 cut(s)	67, 346, 389, 677
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	2 cut(s)	427, 560
Hpy166II	GTNNAC	2 cut(s)	502, 789
Hpy188I	TCNGA	4 cut(s)	48, 217, 232, 394
Hpy188III	TCNNGA	2 cut(s)	23, 297
Hpy8I	GTNNAC	2 cut(s)	502, 789
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	5 cut(s)	185, 499, 506, 685, 727
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	5 cut(s)	166, 268, 581, 589, 718
HpyF3I	CTNAG	2 cut(s)	24, 393
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	5 cut(s)	14, 334, 641, 722, 826
Kzo9I	GATC	2 cut(s)	28, 109
LguI	GCTCTTC	1 cut(s)	687
LmnI	GCTCC	2 cut(s)	477, 607
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	3 cut(s)	236, 705, 763
MaeI	CTAG	2 cut(s)	59, 372
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	3 cut(s)	104, 142, 185
MalI	GATC	2 cut(s)	30, 111
MboI	GATC	2 cut(s)	28, 109
MboII	GAAGA	2 cut(s)	479, 704
MfeI	CAATTG	1 cut(s)	304
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	3 cut(s)	53, 482, 699
MluCI	AATT	7 cut(s)	100, 148, 218, 304, 341, 584, 765
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	7 cut(s)	19, 80, 139, 304, 388, 544, 737
Mph1103I	ATGCAT	1 cut(s)	720
MseI	TTAA	2 cut(s)	540, 687
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	1 cut(s)	71
MunI	CAATTG	1 cut(s)	304
NcoI	CCATGG	1 cut(s)	822
NdeI	CATATG	1 cut(s)	805
NdeII	GATC	2 cut(s)	28, 109
NheI	GCTAGC	1 cut(s)	371
NlaIII	CATG	5 cut(s)	14, 334, 641, 722, 826
NlaIV	GGNNCC	2 cut(s)	21, 30
NmuCI	GTSAC	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	720
PceI	AGGCCT	1 cut(s)	63
PciSI	GCTCTTC	1 cut(s)	687
PfeI	GAWTC	3 cut(s)	67, 346, 677
PkrI	GCNGC	1 cut(s)	165
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PpuMI	RGGWCCY	1 cut(s)	20
Psp124BI	GAGCTC	1 cut(s)	699
Psp5II	RGGWCCY	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	21, 30
PspPI	GGNCC	1 cut(s)	20
PspPPI	RGGWCCY	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	699
SapI	GCTCTTC	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	540, 687
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	2 cut(s)	28, 109
Sau96I	GGNCC	1 cut(s)	20
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	1 cut(s)	398
SduI	GDGCHC	3 cut(s)	53, 482, 699
SfaNI	GCATC	3 cut(s)	236, 705, 763
SinI	GGWCC	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	7 cut(s)	100, 148, 218, 304, 341, 584, 765
SseBI	AGGCCT	1 cut(s)	63
SsiI	CCGC	2 cut(s)	84, 161
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	2 cut(s)	59, 372
SstI	GAGCTC	1 cut(s)	699
StuI	AGGCCT	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	822
TaaI	ACNGT	5 cut(s)	185, 499, 506, 685, 727
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	123, 239
TasI	AATT	7 cut(s)	100, 148, 218, 304, 341, 584, 765
TatI	WGTACW	1 cut(s)	404
TfiI	GAWTC	3 cut(s)	67, 346, 677
Tru1I	TTAA	2 cut(s)	540, 687
Tru9I	TTAA	2 cut(s)	540, 687
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	479, 626
TspGWI	ACGGA	1 cut(s)	499
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	218
XspI	CTAG	2 cut(s)	59, 372
ZrmI	AGTACT	1 cut(s)	406
Zsp2I	ATGCAT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.