Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005454.1

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Reverse (-)

30297 .. 31742

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005454.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atgtcataccattggttggatcccggggatcctaaccattggtatcaaagcccgcaactgggcctgtttccgaagagtccgacaggttacagcggtgggtattactgccttccttcttctcatcttcatgttacccagttcccatcgcacccaagctaccgaccacttccttctcaattcccattccaaccgagttactcaccaccaccactaccttcccacacaatcatcaatggatgtcgagtcgtcatgggtgcaaaatcgagagtttccaaaaagacccaaaatccagatctgctccgtgatgtgggtaagtacttgaggtccaagaggtaccacagacgcggtctctggccagcctcgagtccattgaagtttgggtcactacctgcgagttccgtcgctttcatagcggctaatgattcgtcatcaatgtcgtcggcgtcatcaagaggtatacggatttatgaaaaacccaacttaaatcttcgtccccatgaagttattttgggcttgaataggaattttgctactgctttaattactggaattcatagtgagcacacaactacagcggtggtgactaaagaacttgtgttaaatgttgataaaaatattgttggaggtgttcatggtgttaaattttctgatattgctgatggtgaagatgataatgaggataaggatgatgaagggggaaatgagtgtatgatatttgggagctctgtagcttctaaaaattataatgatgattctcagagagttgatgggcagattgtaacggttgagggaaatgatgatttgatgagaaacaacaaagaaggtcttttagagaagctcagagatatgagttggcctgagaatgctaactgggtggacaagcttatgtcggatattgagcaagagcaaccggtggatgtgccggtggatgtgcatgatggcctaacaagggagcttacattttatacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

323

Amino Acids

35.94

Weight (kDa)

5.94

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	744
Acc36I	ACCTGC	1 cut(s)	397
Acc65I	GGTACC	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	333
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	457
AccII	CGCG	1 cut(s)	345
AciI	CCGC	5 cut(s)	53, 93, 345, 413, 575
AclWI	GGATC	4 cut(s)	14, 23, 27, 36
AcoI	YGGCCR	1 cut(s)	353
AcsI	RAATTY	3 cut(s)	523, 549, 641
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	2 cut(s)	317, 335
AfiI	CCNNNNNNNGG	5 cut(s)	16, 58, 59, 307, 949
AgeI	ACCGGT	1 cut(s)	910
AgsI	TTSAA	2 cut(s)	373, 517
AluBI	AGCT	6 cut(s)	156, 723, 731, 838, 883, 955
AluI	AGCT	6 cut(s)	156, 723, 731, 838, 883, 955
Alw21I	GWGCWC	2 cut(s)	564, 725
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	4 cut(s)	14, 23, 27, 36
Ama87I	CYCGRG	2 cut(s)	23, 361
AoxI	GGCC	4 cut(s)	61, 353, 854, 940
ApoI	RAATTY	3 cut(s)	523, 549, 641
AsiGI	ACCGGT	1 cut(s)	910
Asp718I	GGTACC	1 cut(s)	333
AspS9I	GGNCC	2 cut(s)	61, 324
AsuC2I	CCSGG	2 cut(s)	24, 25
AsuHPI	GGTGA	3 cut(s)	192, 592, 674
AvaI	CYCGRG	2 cut(s)	23, 361
AvaII	GGWCC	1 cut(s)	324
BalI	TGGCCA	1 cut(s)	355
BamHI	GGATCC	2 cut(s)	19, 28
BanI	GGYRCC	1 cut(s)	333
BanII	GRGCYC	1 cut(s)	725
Bbv12I	GWGCWC	2 cut(s)	564, 725
BccI	CCATC	4 cut(s)	151, 653, 761, 932
BcnI	CCSGG	2 cut(s)	24, 25
BcoDI	GTCTC	1 cut(s)	353
BfmI	CTRYAG	2 cut(s)	570, 726
BfuAI	ACCTGC	1 cut(s)	397
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	2 cut(s)	24, 25
Bme18I	GGWCC	1 cut(s)	324
BmeT110I	CYCGRG	2 cut(s)	23, 361
BmgT120I	GGNCC	2 cut(s)	61, 324
BmiI	GGNNCC	3 cut(s)	21, 30, 335
BmrFI	CCNGG	2 cut(s)	24, 25
BmrI	ACTGGG	3 cut(s)	68, 130, 880
BmuI	ACTGGG	3 cut(s)	68, 130, 880
BpuEI	CTTGAG	1 cut(s)	340
BpuMI	CCSGG	2 cut(s)	24, 25
BsaHI	GRCGYC	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	23, 24
BsaWI	WCCGGW	1 cut(s)	910
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 58, 59, 307, 949
Bse118I	RCCGGY	2 cut(s)	910, 922
Bse1I	ACTGG	4 cut(s)	63, 136, 550, 875
BseDI	CCNNGG	2 cut(s)	23, 24
BseGI	GGATG	4 cut(s)	242, 691, 922, 934
BseLI	CCNNNNNNNGG	5 cut(s)	16, 58, 59, 307, 949
BseMII	CTCAG	3 cut(s)	770, 849, 853
BseNI	ACTGG	4 cut(s)	63, 136, 550, 875
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	4 cut(s)	63, 355, 856, 942
BshNI	GGYRCC	1 cut(s)	333
BshTI	ACCGGT	1 cut(s)	910
BsiHKAI	GWGCWC	2 cut(s)	564, 725
BsiHKCI	CYCGRG	2 cut(s)	23, 361
BsiSI	CCGG	3 cut(s)	24, 911, 923
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	5 cut(s)	16, 58, 59, 307, 949
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	477
BsmI	GAATGC	1 cut(s)	868
BsnI	GGCC	4 cut(s)	63, 355, 856, 942
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	2 cut(s)	23, 361
Bsp1286I	GDGCHC	2 cut(s)	564, 725
Bsp143I	GATC	3 cut(s)	19, 28, 292
BspACI	CCGC	5 cut(s)	53, 93, 345, 413, 575
BspANI	GGCC	4 cut(s)	63, 355, 856, 942
BspCNI	CTCAG	3 cut(s)	769, 850, 852
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	21, 30, 335
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	4 cut(s)	14, 23, 27, 36
BspT107I	GGYRCC	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	353
BsrFI	RCCGGY	2 cut(s)	910, 922
BsrI	ACTGG	4 cut(s)	63, 136, 550, 875
BssAI	RCCGGY	2 cut(s)	910, 922
BssECI	CCNNGG	2 cut(s)	23, 24
BssMI	GATC	3 cut(s)	19, 28, 292
BssNAI	GTATAC	1 cut(s)	458
BssNI	GRCGYC	1 cut(s)	443
Bst1107I	GTATAC	1 cut(s)	458
Bst4CI	ACNGT	1 cut(s)	784
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	53, 357
BstDEI	CTNAG	3 cut(s)	756, 839, 858
BstF5I	GGATG	4 cut(s)	242, 691, 922, 934
BstFNI	CGCG	1 cut(s)	345
BstKTI	GATC	3 cut(s)	22, 31, 295
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	3 cut(s)	19, 28, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	22, 23
BstSFI	CTRYAG	2 cut(s)	570, 726
BstUI	CGCG	1 cut(s)	345
BstX2I	RGATCY	3 cut(s)	19, 28, 292
BstYI	RGATCY	3 cut(s)	19, 28, 292
BstZ17I	GTATAC	1 cut(s)	458
BsuRI	GGCC	4 cut(s)	63, 355, 856, 942
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	4 cut(s)	242, 691, 922, 934
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	53, 357
Cfr10I	RCCGGY	2 cut(s)	910, 922
Cfr13I	GGNCC	2 cut(s)	61, 324
Cfr9I	CCCGGG	1 cut(s)	23
CseI	GACGC	2 cut(s)	351, 432
Csp6I	GTAC	2 cut(s)	316, 334
CspAI	ACCGGT	1 cut(s)	910
CviAII	CATG	5 cut(s)	128, 250, 497, 632, 935
CviQI	GTAC	2 cut(s)	316, 334
DdeI	CTNAG	3 cut(s)	756, 839, 858
DpnI	GATC	3 cut(s)	21, 30, 294
DpnII	GATC	3 cut(s)	19, 28, 292
EaeI	YGGCCR	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	723
Eco24I	GRGCYC	1 cut(s)	725
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	723
Eco88I	CYCGRG	2 cut(s)	23, 361
EcoICRI	GAGCTC	1 cut(s)	723
EcoRI	GAATTC	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	725
FaeI	CATG	5 cut(s)	131, 253, 500, 635, 938
FalI	AAGNNNNNCTT	2 cut(s)	810, 842
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	5 cut(s)	127, 249, 496, 631, 934
FauI	CCCGC	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	4 cut(s)	249, 698, 929, 941
FriOI	GRGCYC	1 cut(s)	725
Fsp4HI	GCNGC	1 cut(s)	414
GluI	GCNGC	1 cut(s)	414
HaeIII	GGCC	4 cut(s)	63, 355, 856, 942
HapII	CCGG	3 cut(s)	24, 911, 923
HgaI	GACGC	2 cut(s)	351, 432
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	5 cut(s)	131, 253, 500, 635, 938
HindIII	AAGCTT	1 cut(s)	881
HinfI	GANTC	5 cut(s)	76, 243, 364, 422, 752
HpaII	CCGG	3 cut(s)	24, 911, 923
HphI	GGTGA	3 cut(s)	192, 592, 674
Hpy166II	GTNNAC	2 cut(s)	458, 877
Hpy188I	TCNGA	6 cut(s)	72, 81, 649, 759, 842, 892
Hpy188III	TCNNGA	3 cut(s)	264, 290, 450
Hpy8I	GTNNAC	2 cut(s)	458, 877
Hpy99I	CGWCG	2 cut(s)	404, 442
HpyAV	CCTTC	6 cut(s)	119, 123, 180, 225, 686, 815
HpyCH4III	ACNGT	1 cut(s)	784
HpyCH4V	TGCA	2 cut(s)	257, 934
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	3 cut(s)	756, 839, 858
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	5 cut(s)	131, 253, 500, 635, 938
KpnI	GGTACC	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	19, 28, 292
LmnI	GCTCC	3 cut(s)	303, 720, 952
MaeIII	GTNAC	6 cut(s)	86, 130, 194, 381, 580, 778
MalI	GATC	3 cut(s)	21, 30, 294
MboI	GATC	3 cut(s)	19, 28, 292
MboII	GAAGA	5 cut(s)	85, 108, 116, 479, 677
MflI	RGATCY	3 cut(s)	19, 28, 292
MhlI	GDGCHC	2 cut(s)	564, 725
MlsI	TGGCCA	1 cut(s)	355
MluCI	AATT	6 cut(s)	176, 523, 540, 549, 641, 739
MluNI	TGGCCA	1 cut(s)	355
MlyI	GAGTC	3 cut(s)	85, 252, 373
MmeI	TCCRAC	4 cut(s)	104, 211, 601, 870
MnlI	CCTC	7 cut(s)	315, 324, 370, 446, 617, 670, 781
Mox20I	TGGCCA	1 cut(s)	355
MscI	TGGCCA	1 cut(s)	355
MseI	TTAA	4 cut(s)	482, 539, 599, 639
MslI	CAYNNNNRTG	1 cut(s)	126
Msp20I	TGGCCA	1 cut(s)	355
MspA1I	CMGCKG	2 cut(s)	93, 575
MspI	CCGG	3 cut(s)	24, 911, 923
MspR9I	CCNGG	2 cut(s)	24, 25
Mva1269I	GAATGC	1 cut(s)	868
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	410
NciI	CCSGG	2 cut(s)	24, 25
NdeII	GATC	3 cut(s)	19, 28, 292
NlaIII	CATG	5 cut(s)	131, 253, 500, 635, 938
NlaIV	GGNNCC	3 cut(s)	21, 30, 335
NmuCI	GTSAC	2 cut(s)	381, 580
PaeR7I	CTCGAG	1 cut(s)	361
PctI	GAATGC	1 cut(s)	868
PfeI	GAWTC	2 cut(s)	422, 752
PflFI	GACNNNGTC	1 cut(s)	345
PflMI	CCANNNNNTGG	1 cut(s)	16
PinAI	ACCGGT	1 cut(s)	910
PkrI	GCNGC	1 cut(s)	415
PleI	GAGTC	3 cut(s)	84, 251, 372
PpsI	GAGTC	3 cut(s)	84, 251, 372
PsiI	TTATAA	1 cut(s)	744
Psp124BI	GAGCTC	1 cut(s)	725
PspN4I	GGNNCC	3 cut(s)	21, 30, 335
PspPI	GGNCC	2 cut(s)	61, 324
PspXI	VCTCGAGB	1 cut(s)	361
PsuI	RGATCY	3 cut(s)	19, 28, 292
PsyI	GACNNNGTC	1 cut(s)	345
RsaI	GTAC	2 cut(s)	317, 335
RsaNI	GTAC	2 cut(s)	316, 334
RseI	CAYNNNNRTG	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	725
SaqAI	TTAA	4 cut(s)	482, 539, 599, 639
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	3 cut(s)	19, 28, 292
Sau96I	GGNCC	2 cut(s)	61, 324
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	3 cut(s)	85, 252, 373
ScrFI	CCNGG	2 cut(s)	24, 25
SduI	GDGCHC	2 cut(s)	564, 725
SfcI	CTRYAG	2 cut(s)	570, 726
Sfr274I	CTCGAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	361
SmaI	CCCGGG	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	2 cut(s)	319, 361
SmoI	CTYRAG	2 cut(s)	319, 361
Sse9I	AATT	6 cut(s)	176, 523, 540, 549, 641, 739
SsiI	CCGC	5 cut(s)	53, 93, 345, 413, 575
SspI	AATATT	1 cut(s)	616
SstI	GAGCTC	1 cut(s)	725
StyD4I	CCNGG	2 cut(s)	22, 23
TaaI	ACNGT	1 cut(s)	784
TaqI	TCGA	3 cut(s)	241, 263, 362
TasI	AATT	6 cut(s)	176, 523, 540, 549, 641, 739
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	2 cut(s)	422, 752
Tru1I	TTAA	4 cut(s)	482, 539, 599, 639
Tru9I	TTAA	4 cut(s)	482, 539, 599, 639
TseFI	GTSAC	2 cut(s)	381, 580
Tsp45I	GTSAC	2 cut(s)	381, 580
TspDTI	ATGAA	7 cut(s)	116, 397, 483, 513, 542, 620, 705
TspGWI	ACGGA	3 cut(s)	290, 388, 475
TspMI	CCCGGG	1 cut(s)	23
Tth111I	GACNNNGTC	1 cut(s)	345
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	3 cut(s)	523, 549, 641
XhoI	CTCGAG	1 cut(s)	361
XmaI	CCCGGG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	457
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.