Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Forward (+)

62639288 .. 62640190

Gene Structure 903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG398900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTGTATCTAAGAAAGAATCGATGCTGGTTAACGAGGAGGAACTGGAAGATGATAGTGATATGGGGGACGATGTGTCTGAGTCAGAATTGGAACAAGAATCGGAAGAGGAATCTGAGGAGGAAGGAGATGTGAGATTGGCTGAACCTGCCCAGAATGCCACATACAACAGAGATGGTCTGTTAGAGAAGCTTGGAGATATGAGCTGGCCCGAGAATGCTAAATGGGTGGACAGGCTGACGTTGGATATTGAGCAAGAGCAACCGGTGGATGTGAATGATGACCTGACAAGGGAGCTTGCGTTTTATACACAGGCTCTAAATGGAACGAGGATGGCCTTTGAGAAGCTTCAGTCGATGGGGCTTCCATTTCTGAGACCTGAGGACTACTATGCAGAAATGGTGAAGTCGGATTCCCACATGGAGAAAGTGAAGAGCCGGCTTTTGGTGGAGAAGAAGAACATGGAGGAAGCTGATGAGAGAAGGAAGGCCAGAGAGGCCAAGAAATTGTCTAAAGAGATTCAGAACCAGAAGTTGAAGGAGAGAGCTAAGCAGAAAAAGGAGTCTATTGAGTCTGTGAAGAAGTGGAGGAAGCAGAGGCAGCAAAGTGGGTTTGCTGGGGGTGACAAAGGAAGTGAGTTGGATTTGGCCTTTGAAGATGGCAAACCATTTGAGAAGTCAAGTAATAAGAGGCCTGGTGTAGCTCCCGGAGATCGGTCTGGAGGGAAGGCAAAATATGCTGGAAAGGGGAAAAAGCCAAAGAAGAGAGAAATCAAGGATTCCAAGTTTGGATTTGGTGGGAGGAAAGGTTCCAGGAAGCAAAATGTTGCTGAAACCACCAACGATTTGAGAGGGTTCAATAAAGAAGATGGTTTCTCAAAAAATAAGAAAAGGAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

300

Amino Acids

34.26

Weight (kDa)

6.23

Isoelectric Point (pI)

62.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ebp2	PF05890	56 - 296	2.7e-67	Eukaryotic rRNA processing protein EBP2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	292, 445, 714
AgeI	ACCGGT	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	538, 656, 859
AhdI	GACNNNNNGTC	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	694, 812
AloI	GAACNNNNNNTCC	2 cut(s)	793, 825
AluBI	AGCT	7 cut(s)	193, 207, 298, 349, 473, 548, 704
AluI	AGCT	7 cut(s)	193, 207, 298, 349, 473, 548, 704
Alw26I	GTCTC	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	6 cut(s)	209, 336, 489, 498, 648, 692
ApeKI	GCWGC	1 cut(s)	601
AsiGI	ACCGGT	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	210
AsuC2I	CCSGG	1 cut(s)	708
AsuHPI	GGTGA	2 cut(s)	415, 635
AvaI	CYCGRG	1 cut(s)	212
AxyI	CCTNAGG	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	5 cut(s)	170, 328, 352, 653, 863
BciT130I	CCWGG	2 cut(s)	696, 814
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	1 cut(s)	370
BfuAI	ACCTGC	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	497
BisI	GCNGC	1 cut(s)	602
BlpI	GCTNAGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	603
Bme1390I	CCNGG	3 cut(s)	696, 708, 814
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	811
BmrFI	CCNGG	3 cut(s)	696, 708, 814
BmsI	GCATC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	741
Bpu1102I	GCTNAGC	1 cut(s)	549
BpuMI	CCSGG	1 cut(s)	708
Bsa29I	ATCGAT	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	370
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	4 cut(s)	287, 317, 793, 823
Bsc4I	CCNNNNNNNGG	3 cut(s)	292, 445, 714
Bse118I	RCCGGY	2 cut(s)	265, 438
Bse1I	ACTGG	1 cut(s)	51
Bse21I	CCTNAGG	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	696, 814
BseCI	ATCGAT	1 cut(s)	23
BseGI	GGATG	2 cut(s)	277, 339
BseLI	CCNNNNNNNGG	3 cut(s)	292, 445, 714
BseMII	CTCAG	4 cut(s)	72, 108, 365, 372
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	2 cut(s)	53, 134
BseXI	GCAGC	1 cut(s)	613
BseYI	CCCAGC	1 cut(s)	617
BshFI	GGCC	6 cut(s)	211, 338, 491, 500, 650, 694
BshTI	ACCGGT	1 cut(s)	265
BshVI	ATCGAT	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	266, 439, 708
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	292, 445, 714
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	83
BsmI	GAATGC	2 cut(s)	163, 223
BsnI	GGCC	6 cut(s)	211, 338, 491, 500, 650, 694
Bso31I	GGTCTC	1 cut(s)	370
BsoBI	CYCGRG	1 cut(s)	212
Bsp143I	GATC	1 cut(s)	712
Bsp1720I	GCTNAGC	1 cut(s)	549
BspANI	GGCC	6 cut(s)	211, 338, 491, 500, 650, 694
BspCNI	CTCAG	4 cut(s)	73, 109, 366, 373
BspDI	ATCGAT	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	811
BspMI	ACCTGC	1 cut(s)	157
BspQI	GCTCTTC	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	370
BsrFI	RCCGGY	2 cut(s)	265, 438
BsrI	ACTGG	1 cut(s)	51
BssAI	RCCGGY	2 cut(s)	265, 438
BssMI	GATC	1 cut(s)	712
Bst2UI	CCWGG	2 cut(s)	696, 814
Bst6I	CTCTTC	3 cut(s)	102, 428, 758
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstC8I	GCNNGC	3 cut(s)	209, 300, 440
BstDEI	CTNAG	6 cut(s)	12, 81, 117, 374, 381, 549
BstF5I	GGATG	2 cut(s)	277, 339
BstKTI	GATC	1 cut(s)	715
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	712
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 158, 497, 601, 737
BstNI	CCWGG	2 cut(s)	696, 814
BstSCI	CCNGG	3 cut(s)	694, 706, 812
BstV1I	GCAGC	1 cut(s)	613
Bsu15I	ATCGAT	1 cut(s)	23
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	6 cut(s)	211, 338, 491, 500, 650, 694
BsuTUI	ATCGAT	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	277, 339
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	3 cut(s)	209, 300, 440
Cfr10I	RCCGGY	2 cut(s)	265, 438
Cfr13I	GGNCC	1 cut(s)	210
ClaI	ATCGAT	1 cut(s)	23
CspAI	ACCGGT	1 cut(s)	265
CviAII	CATG	2 cut(s)	421, 463
DdeI	CTNAG	6 cut(s)	12, 81, 117, 374, 381, 549
DpnI	GATC	1 cut(s)	714
DpnII	GATC	1 cut(s)	712
DriI	GACNNNNNGTC	1 cut(s)	76
Eam1104I	CTCTTC	3 cut(s)	102, 428, 758
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EarI	CTCTTC	3 cut(s)	102, 428, 758
Eco147I	AGGCCT	1 cut(s)	694
Eco31I	GGTCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	335
Eco81I	CCTNAGG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	694, 812
FaeI	CATG	2 cut(s)	424, 466
FaiI	YATR	8 cut(s)	65, 166, 203, 309, 393, 422, 464, 738
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	420, 462
Fnu4HI	GCNGC	1 cut(s)	602
FokI	GGATG	2 cut(s)	284, 346
Fsp4HI	GCNGC	1 cut(s)	602
GluI	GCNGC	1 cut(s)	602
GsaI	CCCAGC	1 cut(s)	621
GsuI	CTGGAG	1 cut(s)	741
HaeIII	GGCC	6 cut(s)	211, 338, 491, 500, 650, 694
HapII	CCGG	3 cut(s)	266, 439, 708
Hin1II	CATG	2 cut(s)	424, 466
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	2 cut(s)	191, 347
HinfI	GANTC	9 cut(s)	20, 83, 101, 113, 413, 520, 563, 572, 779
HpaI	GTTAAC	1 cut(s)	34
HpaII	CCGG	3 cut(s)	266, 439, 708
HphI	GGTGA	2 cut(s)	415, 635
Hpy166II	GTNNAC	2 cut(s)	34, 232
Hpy188I	TCNGA	7 cut(s)	82, 88, 106, 118, 375, 412, 525
Hpy188III	TCNNGA	1 cut(s)	720
Hpy8I	GTNNAC	2 cut(s)	34, 232
HpyAV	CCTTC	5 cut(s)	119, 477, 481, 532, 721
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 158, 497, 601, 737
HpyF3I	CTNAG	6 cut(s)	12, 81, 117, 374, 381, 549
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	2 cut(s)	424, 466
KroI	GCCGGC	1 cut(s)	438
KroNI	GCCGGC	1 cut(s)	440
KspAI	GTTAAC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	712
LguI	GCTCTTC	1 cut(s)	428
LmnI	GCTCC	2 cut(s)	295, 709
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	1 cut(s)	15
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	1 cut(s)	714
MboI	GATC	1 cut(s)	712
MboII	GAAGA	9 cut(s)	62, 119, 445, 466, 469, 592, 668, 775, 878
MluCI	AATT	2 cut(s)	89, 506
MlyI	GAGTC	3 cut(s)	92, 572, 581
MmeI	TCCRAC	3 cut(s)	225, 390, 621
MroNI	GCCGGC	1 cut(s)	438
MseI	TTAA	1 cut(s)	33
MspI	CCGG	3 cut(s)	266, 439, 708
MspR9I	CCNGG	3 cut(s)	696, 708, 814
Mva1269I	GAATGC	2 cut(s)	163, 223
MvaI	CCWGG	2 cut(s)	696, 814
MwoI	GCNNNNNNNGC	5 cut(s)	149, 158, 497, 601, 737
NaeI	GCCGGC	1 cut(s)	440
NciI	CCSGG	1 cut(s)	708
NdeII	GATC	1 cut(s)	712
NgoMIV	GCCGGC	1 cut(s)	438
NlaIII	CATG	2 cut(s)	424, 466
NlaIV	GGNNCC	1 cut(s)	811
NmuCI	GTSAC	1 cut(s)	623
PceI	AGGCCT	1 cut(s)	694
PciSI	GCTCTTC	1 cut(s)	428
PctI	GAATGC	2 cut(s)	163, 223
PdiI	GCCGGC	1 cut(s)	440
PfeI	GAWTC	6 cut(s)	20, 101, 113, 413, 520, 779
PfoI	TCCNGGA	2 cut(s)	706, 812
PinAI	ACCGGT	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	603
PleI	GAGTC	3 cut(s)	91, 571, 580
PpsI	GAGTC	3 cut(s)	91, 571, 580
Psp6I	CCWGG	2 cut(s)	694, 812
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	2 cut(s)	694, 812
PspN4I	GGNNCC	1 cut(s)	811
PspPI	GGNCC	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	602
Sau3AI	GATC	1 cut(s)	712
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	3 cut(s)	92, 572, 581
ScrFI	CCNGG	3 cut(s)	696, 708, 814
SfaNI	GCATC	1 cut(s)	15
SfiI	GGCCNNNNNGGCC	1 cut(s)	497
Sse9I	AATT	2 cut(s)	89, 506
SseBI	AGGCCT	1 cut(s)	694
StuI	AGGCCT	1 cut(s)	694
StyD4I	CCNGG	3 cut(s)	694, 706, 812
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	23, 356
TaqII	GACCGA	1 cut(s)	705
TasI	AATT	2 cut(s)	89, 506
TfiI	GAWTC	6 cut(s)	20, 101, 113, 413, 520, 779
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	623
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.