Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Forward (+)

4087585 .. 4089367

Gene Structure 1783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000704

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCCCAACGGGCTTCGCGGCGTGCCGGCTGTTCCGTCGTCAGGAAATTCGATGCTGGTTAACGACCAGGAACTGGAAGACGATAGTGATATGGGAGCCCATGTGTCTGATTCCGAATTGGAACAAGACTCGGGAGAGAAAGGCGATGTGAGATCGACTGAACCCTCCCAGAATTCTACATACAACAAAGAAAGTCTGTTAGAGAAGCTTAGAGATATGAGTTGGCCTGAGAATGCTAAACGGGTGGACAAGCTTACGTCCGATATTGAGCAAGAGCAACCGGTGGATGTGCATGATGACCTGACAAGGGAGCTTGCATTTCATACACAGGCTCTAAATGGAATGAGGATGGCCTTTGATAAGCTTCAGTTAATGGGGCTTCCATTTCTGAGAGAAATGGTGAAGTCGGAGTCCCAATTGGAGAAACTGAAGAGCCAACTTTTGTATTTTCAACGCAAGCTTGATCTAGATATCCCATCAACAGTTCTGCAATTTTTGTTACTTGATGCGCAAGAGGCTGTAGATCTGGATCCCCAGAAGATCAATCGAGAACAAGCAGAAGTTGCTCATGCCAATTTTTCTTTTTTAAGAAAAGAAGCTCAATCTATTTTGGATTCGGCGGAAAAAAACAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

212

Amino Acids

23.83

Weight (kDa)

4.58

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ebp2	PF05890	61 - 151	2e-14	Eukaryotic rRNA processing protein EBP2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	510
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccII	CGCG	1 cut(s)	18
AciI	CCGC	2 cut(s)	18, 620
AclWI	GGATC	2 cut(s)	524, 537
AcsI	RAATTY	2 cut(s)	46, 172
AcuI	CTGAAG	2 cut(s)	350, 449
AfiI	CCNNNNNNNGG	3 cut(s)	41, 73, 307
AgeI	ACCGGT	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	452
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	7 cut(s)	208, 253, 313, 364, 460, 599, 633
AluI	AGCT	7 cut(s)	208, 253, 313, 364, 460, 599, 633
AlwI	GGATC	2 cut(s)	524, 537
AlwNI	CAGNNNCTG	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	2 cut(s)	224, 351
ApoI	RAATTY	2 cut(s)	46, 172
AsiGI	ACCGGT	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	412
AvaI	CYCGRG	1 cut(s)	130
BamHI	GGATCC	1 cut(s)	529
BanII	GRGCYC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	84
BccI	CCATC	2 cut(s)	343, 484
BciT130I	CCWGG	1 cut(s)	68
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	519
BglI	GCCNNNNNGGC	1 cut(s)	10
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	68
BmeT110I	CYCGRG	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	97, 531
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	2 cut(s)	42, 496
BpiI	GAAGAC	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 73, 307
Bse118I	RCCGGY	2 cut(s)	25, 280
Bse1I	ACTGG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	528
BseBI	CCWGG	1 cut(s)	68
BseGI	GGATG	2 cut(s)	292, 354
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	3 cut(s)	41, 73, 307
BseMII	CTCAG	2 cut(s)	219, 380
BseNI	ACTGG	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	226, 353
BshTI	ACCGGT	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	26, 281
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	3 cut(s)	41, 73, 307
BsmFI	GGGAC	1 cut(s)	397
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	226, 353
BsoBI	CYCGRG	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	5 cut(s)	152, 463, 523, 529, 540
BspACI	CCGC	2 cut(s)	18, 620
BspANI	GGCC	2 cut(s)	226, 353
BspCNI	CTCAG	2 cut(s)	220, 381
BspFNI	CGCG	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	97, 531
BspPI	GGATC	2 cut(s)	524, 537
BspQI	GCTCTTC	1 cut(s)	425
BsrFI	RCCGGY	2 cut(s)	25, 280
BsrI	ACTGG	1 cut(s)	78
BssAI	RCCGGY	2 cut(s)	25, 280
BssMI	GATC	5 cut(s)	152, 463, 523, 529, 540
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	425
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	4 cut(s)	23, 27, 315, 458
BstDEI	CTNAG	3 cut(s)	209, 228, 389
BstF5I	GGATG	2 cut(s)	292, 354
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	5 cut(s)	155, 466, 526, 532, 543
BstMBI	GATC	5 cut(s)	152, 463, 523, 529, 540
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 515, 563
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	519
BstUI	CGCG	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	2 cut(s)	523, 529
BstYI	RGATCY	2 cut(s)	523, 529
BsuRI	GGCC	2 cut(s)	226, 353
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	292, 354
Cac8I	GCNNGC	4 cut(s)	23, 27, 315, 458
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	511
Cfr10I	RCCGGY	2 cut(s)	25, 280
CspAI	ACCGGT	1 cut(s)	280
CviAII	CATG	3 cut(s)	101, 293, 569
DdeI	CTNAG	3 cut(s)	209, 228, 389
DpnI	GATC	5 cut(s)	154, 465, 525, 531, 542
DpnII	GATC	5 cut(s)	152, 463, 523, 529, 540
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
EciI	GGCGGA	1 cut(s)	635
Eco24I	GRGCYC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	472
Eco57I	CTGAAG	2 cut(s)	350, 449
Eco88I	CYCGRG	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	66
EcoRV	GATATC	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	100
FaeI	CATG	3 cut(s)	104, 296, 572
FaiI	YATR	7 cut(s)	92, 102, 181, 218, 294, 324, 570
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	3 cut(s)	100, 292, 568
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	2 cut(s)	299, 361
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	1 cut(s)	467
FspI	TGCGCA	1 cut(s)	510
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	226, 353
HapII	CCGG	2 cut(s)	26, 281
HhaI	GCGC	1 cut(s)	511
Hin1II	CATG	3 cut(s)	104, 296, 572
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HindIII	AAGCTT	4 cut(s)	206, 251, 362, 458
HinfI	GANTC	4 cut(s)	110, 128, 410, 614
HpaI	GTTAAC	1 cut(s)	61
HpaII	CCGG	2 cut(s)	26, 281
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	2 cut(s)	61, 247
Hpy188I	TCNGA	5 cut(s)	109, 115, 262, 390, 409
Hpy188III	TCNNGA	5 cut(s)	42, 132, 467, 527, 548
Hpy8I	GTNNAC	2 cut(s)	61, 247
Hpy99I	CGWCG	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	3 cut(s)	292, 317, 490
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 515, 563
HpyF3I	CTNAG	3 cut(s)	209, 228, 389
HpySE526I	ACGT	1 cut(s)	257
Hsp92II	CATG	3 cut(s)	104, 296, 572
HspAI	GCGC	1 cut(s)	509
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
KspAI	GTTAAC	1 cut(s)	61
Kzo9I	GATC	5 cut(s)	152, 463, 523, 529, 540
LguI	GCTCTTC	1 cut(s)	425
LmnI	GCTCC	2 cut(s)	95, 310
LweI	GCATC	2 cut(s)	42, 496
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	1 cut(s)	257
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	5 cut(s)	154, 465, 525, 531, 542
MboI	GATC	5 cut(s)	152, 463, 523, 529, 540
MboII	GAAGA	3 cut(s)	89, 442, 550
MfeI	CAATTG	1 cut(s)	416
MflI	RGATCY	2 cut(s)	523, 529
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	6 cut(s)	46, 116, 172, 416, 491, 574
MlyI	GAGTC	2 cut(s)	122, 419
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	3 cut(s)	175, 339, 508
MroNI	GCCGGC	1 cut(s)	25
MseI	TTAA	3 cut(s)	60, 371, 587
MspI	CCGG	2 cut(s)	26, 281
MspR9I	CCNGG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	416
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	10, 515, 563
NaeI	GCCGGC	1 cut(s)	27
NdeII	GATC	5 cut(s)	152, 463, 523, 529, 540
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	3 cut(s)	104, 296, 572
NlaIV	GGNNCC	2 cut(s)	97, 531
NsbI	TGCGCA	1 cut(s)	510
PciSI	GCTCTTC	1 cut(s)	425
PctI	GAATGC	1 cut(s)	238
PdiI	GCCGGC	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	110, 614
PflMI	CCANNNNNTGG	1 cut(s)	73
PinAI	ACCGGT	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	2 cut(s)	122, 418
PpsI	GAGTC	2 cut(s)	122, 418
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	97, 531
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	523, 529
SapI	GCTCTTC	1 cut(s)	425
SaqAI	TTAA	3 cut(s)	60, 371, 587
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	5 cut(s)	152, 463, 523, 529, 540
SchI	GAGTC	2 cut(s)	122, 419
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	9 cut(s)	210, 255, 260, 303, 315, 366, 462, 601, 635
SfaNI	GCATC	2 cut(s)	42, 496
SfcI	CTRYAG	1 cut(s)	519
Sse9I	AATT	6 cut(s)	46, 116, 172, 416, 491, 574
SsiI	CCGC	2 cut(s)	18, 620
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	3 cut(s)	50, 155, 547
TasI	AATT	6 cut(s)	46, 116, 172, 416, 491, 574
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	2 cut(s)	110, 614
Tru1I	TTAA	3 cut(s)	60, 371, 587
Tru9I	TTAA	3 cut(s)	60, 371, 587
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	24
Van91I	CCANNNNNTGG	1 cut(s)	73
XapI	RAATTY	2 cut(s)	46, 172
XbaI	TCTAGA	1 cut(s)	466
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.