Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Forward (+)

33231343 .. 33232031

Gene Structure 689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029116

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAGAAACAACAAAGAAGGTCTATTAGCGAAGCTCAGAGATATGAGTTGGCCTGAGAATGCTAAATGGGTGGATCAGCTTACGTCGGATATTGAGCAAGAGCAACCGGTGGATGTGCATGATGGCCTGACAAGGGAGCTTGCATTTTATACACAGGCTCTAACTCGAATGAGGATGGCCTTTAAGAAGCTTCAGTTAATGGGGCTTCCATTTCTGAGACCTGAGGACTACTATGCAAAAATGGTGAAGTCCGAGTCCCAATTGGGGAAAGTGAAGAGCCAATTTTTTGTGGAAATGACTACCAATCTGACTCAAAGCTCTTTGTCTCAGTTAGGAGCAGAAATTTGGCCTCCTGATGATGGGGAATGGTTGGATTTGGATGGTGAAACCTATTATCGAGTTGTTAGAGGATTTCTTGATAACATAAATGTGAAAGAGTTGGCACCTTTGATTATTAAAGCTCAGAAGCTAGAGTCTTCTACAATTGTGGTTGATAGATCATGTTGTTGCAGTATTGTTATTGCTTGTGTTGGTATTGAATTTTCAGATAAAGAACACAACATTCTAGATGAAGTGAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

195

Amino Acids

22.18

Weight (kDa)

4.88

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ebp2	PF05890	3 - 100	5.5e-25	Eukaryotic rRNA processing protein EBP2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	442
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	2 cut(s)	342, 539
AcuI	CTGAAG	1 cut(s)	176
AfiI	CCNNNNNNNGG	3 cut(s)	133, 264, 359
AgeI	ACCGGT	1 cut(s)	106
AgsI	TTSAA	1 cut(s)	539
AluBI	AGCT	7 cut(s)	34, 79, 139, 190, 318, 461, 469
AluI	AGCT	7 cut(s)	34, 79, 139, 190, 318, 461, 469
Alw26I	GTCTC	2 cut(s)	211, 330
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	4 cut(s)	50, 124, 177, 347
ApoI	RAATTY	2 cut(s)	342, 539
AsiGI	ACCGGT	1 cut(s)	106
AsuHPI	GGTGA	2 cut(s)	256, 395
AxyI	CCTNAGG	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	442
BbsI	GAAGAC	1 cut(s)	468
BccI	CCATC	4 cut(s)	116, 169, 353, 374
BcoDI	GTCTC	2 cut(s)	211, 330
BfaI	CTAG	2 cut(s)	470, 566
BmiI	GGNNCC	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	468
BsaI	GGTCTC	1 cut(s)	211
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 264, 359
Bse118I	RCCGGY	1 cut(s)	106
Bse21I	CCTNAGG	1 cut(s)	222
BseGI	GGATG	3 cut(s)	118, 180, 385
BseLI	CCNNNNNNNGG	3 cut(s)	133, 264, 359
BseMII	CTCAG	6 cut(s)	45, 49, 206, 213, 341, 476
BshFI	GGCC	4 cut(s)	52, 126, 179, 349
BshNI	GGYRCC	1 cut(s)	442
BshTI	ACCGGT	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	3 cut(s)	133, 264, 359
BsmAI	GTCTC	2 cut(s)	211, 330
BsmFI	GGGAC	1 cut(s)	241
BsmI	GAATGC	2 cut(s)	64, 583
BsnI	GGCC	4 cut(s)	52, 126, 179, 349
Bso31I	GGTCTC	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	73, 497
BspANI	GGCC	4 cut(s)	52, 126, 179, 349
BspCNI	CTCAG	6 cut(s)	46, 48, 207, 214, 340, 475
BspLI	GGNNCC	1 cut(s)	444
BspPI	GGATC	1 cut(s)	81
BspQI	GCTCTTC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	442
BspTNI	GGTCTC	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	106
BssMI	GATC	2 cut(s)	73, 497
Bst6I	CTCTTC	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	7 cut(s)	35, 54, 215, 222, 327, 462, 582
BstF5I	GGATG	3 cut(s)	118, 180, 385
BstKTI	GATC	2 cut(s)	76, 500
BstMAI	GTCTC	2 cut(s)	211, 330
BstMBI	GATC	2 cut(s)	73, 497
BstV2I	GAAGAC	1 cut(s)	468
Bsu36I	CCTNAGG	1 cut(s)	222
BsuRI	GGCC	4 cut(s)	52, 126, 179, 349
BtsCI	GGATG	3 cut(s)	118, 180, 385
Cac8I	GCNNGC	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	106
CspAI	ACCGGT	1 cut(s)	106
CviAII	CATG	2 cut(s)	119, 501
DdeI	CTNAG	7 cut(s)	35, 54, 215, 222, 327, 462, 582
DpnI	GATC	2 cut(s)	75, 499
DpnII	GATC	2 cut(s)	73, 497
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	122, 504
FaiI	YATR	6 cut(s)	44, 120, 150, 234, 425, 502
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	2 cut(s)	118, 500
FokI	GGATG	3 cut(s)	125, 187, 392
FspBI	CTAG	2 cut(s)	470, 566
HaeIII	GGCC	4 cut(s)	52, 126, 179, 349
HapII	CCGG	1 cut(s)	107
Hin1II	CATG	2 cut(s)	122, 504
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	3 cut(s)	254, 310, 473
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	2 cut(s)	256, 395
Hpy188I	TCNGA	7 cut(s)	38, 88, 216, 253, 309, 465, 547
Hpy188III	TCNNGA	3 cut(s)	353, 416, 566
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	4 cut(s)	118, 143, 236, 510
HpyF3I	CTNAG	7 cut(s)	35, 54, 215, 222, 327, 462, 582
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	122, 504
Kzo9I	GATC	2 cut(s)	73, 497
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	2 cut(s)	136, 335
LpnPI	CCDG	6 cut(s)	66, 120, 140, 140, 234, 366
MaeI	CTAG	2 cut(s)	470, 566
MaeII	ACGT	1 cut(s)	83
MalI	GATC	2 cut(s)	75, 499
MboI	GATC	2 cut(s)	73, 497
MboII	GAAGA	2 cut(s)	286, 468
MfeI	CAATTG	2 cut(s)	260, 483
MluCI	AATT	5 cut(s)	260, 281, 342, 483, 539
MlyI	GAGTC	3 cut(s)	263, 304, 482
MmeI	TCCRAC	2 cut(s)	66, 351
MnlI	CCTC	4 cut(s)	165, 217, 360, 401
MseI	TTAA	3 cut(s)	183, 197, 456
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	1 cut(s)	107
MunI	CAATTG	2 cut(s)	260, 483
Mva1269I	GAATGC	2 cut(s)	64, 583
NdeII	GATC	2 cut(s)	73, 497
NlaIII	CATG	2 cut(s)	122, 504
NlaIV	GGNNCC	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	269
PctI	GAATGC	2 cut(s)	64, 583
PinAI	ACCGGT	1 cut(s)	106
PleI	GAGTC	3 cut(s)	262, 304, 481
PpsI	GAGTC	3 cut(s)	262, 304, 481
PspN4I	GGNNCC	1 cut(s)	444
RseI	CAYNNNNRTG	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	3 cut(s)	183, 197, 456
Sau3AI	GATC	2 cut(s)	73, 497
SchI	GAGTC	3 cut(s)	263, 304, 482
SmiMI	CAYNNNNRTG	1 cut(s)	428
Sse9I	AATT	5 cut(s)	260, 281, 342, 483, 539
SspMI	CTAG	2 cut(s)	470, 566
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	166, 397
TasI	AATT	5 cut(s)	260, 281, 342, 483, 539
Tru1I	TTAA	3 cut(s)	183, 197, 456
Tru9I	TTAA	3 cut(s)	183, 197, 456
TspDTI	ATGAA	1 cut(s)	585
XapI	RAATTY	2 cut(s)	342, 539
XbaI	TCTAGA	1 cut(s)	565
XspI	CTAG	2 cut(s)	470, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.