Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032109.1

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 904

Gene Structure 903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032109.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgtcaaacacaggtggtggaaatataaatgtcccaacattcaagatttttgcttcacatcttgggatcacaactttctctgtcagtgctttgcagcaatttgggcatgatagtctgagccaaccaattatggtggaagtctacgcagcaccagagattggcctgcatgatatattccttgtacctggtacatcctatgtgcttactttaaatggagacccaacaattggtgtaaaggttgaatttacaattttggcatcgctgcaaattgagtatcaaattgatccattagatgtcaaggctgttgttgcagcaacaactattcaattgcaattaaatgaagctattgagttatacaagggaatggacaaacttcttcgagcttttgagatatatatagcctttgatcatctggcctgccatctttgctcaattggtccacaacttttaattgagcaattctttgatattgcattcattgtgaatttttatgatacaaatgtcggtcagtggctccctgctcatgatgaaagatccatttgcgaaggtataaagagaatcagtagaaggttacttacattgctttcccttcatcacttcaataataagatggtccaacaattcagttacctgcagatagttctgaagaaactcattcaggcagaactgcaagtttctggtttccgatcttggatattatctagctgctattgcaagtgcaactcgattctccctgtagttgtaattgtggatgcttctgaacagattcaacaaaatgtcatcaggattgtcttgtacagtttgtttttctcacacgctgtgatggcacaagaactcatagttgaggataatacaaagcaggttggtactgcatggacatttgaaagcattgacatatttact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0012505 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Big_2 RRM_1

Protein Analysis

301

Amino Acids

33.78

Weight (kDa)

5.3

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	639, 850
AccB7I	CCANNNNNTGG	2 cut(s)	158, 227
AccI	GTMKAC	1 cut(s)	141
AclWI	GGATC	3 cut(s)	74, 278, 528
AcsI	RAATTY	2 cut(s)	242, 484
AcuI	CTGAAG	1 cut(s)	665
AdeI	CACNNNGTG	1 cut(s)	820
AfaI	GTAC	4 cut(s)	183, 190, 797, 868
AfiI	CCNNNNNNNGG	2 cut(s)	158, 227
AgsI	TTSAA	6 cut(s)	43, 242, 326, 601, 770, 884
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	3 cut(s)	344, 383, 705
AluI	AGCT	3 cut(s)	344, 383, 705
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	3 cut(s)	74, 278, 528
AoxI	GGCC	2 cut(s)	160, 414
ApeKI	GCWGC	5 cut(s)	94, 146, 262, 311, 705
ApoI	RAATTY	2 cut(s)	242, 484
Asp700I	GAANNNNTTC	1 cut(s)	765
AspS9I	GGNCC	2 cut(s)	437, 613
AvaII	GGWCC	2 cut(s)	437, 613
BaeI	ACNNNNGTAYC	2 cut(s)	486, 519
BarI	GAAGNNNNNNTAC	2 cut(s)	559, 591
BbvI	GCAGC	5 cut(s)	106, 158, 249, 323, 692
BccI	CCATC	3 cut(s)	429, 604, 817
BciT130I	CCWGG	1 cut(s)	186
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	1 cut(s)	702
BfmI	CTRYAG	2 cut(s)	632, 735
BfuAI	ACCTGC	2 cut(s)	639, 850
BisI	GCNGC	5 cut(s)	95, 147, 263, 312, 706
BlsI	GCNGC	5 cut(s)	96, 148, 264, 313, 707
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	2 cut(s)	437, 613
BmgT120I	GGNCC	2 cut(s)	437, 613
BmiI	GGNNCC	1 cut(s)	515
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	266, 742
BsaI	GGTCTC	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 227
Bse3DI	GCAATG	1 cut(s)	578
BseBI	CCWGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	191, 757
BseLI	CCNNNNNNNGG	2 cut(s)	158, 227
BseMI	GCAATG	1 cut(s)	578
BseMII	CTCAG	1 cut(s)	107
BseXI	GCAGC	5 cut(s)	106, 158, 249, 323, 692
BshFI	GGCC	2 cut(s)	162, 416
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	158, 227
BsmAI	GTCTC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	162, 416
Bso31I	GGTCTC	1 cut(s)	210
Bsp1407I	TGTACA	1 cut(s)	795
Bsp143I	GATC	5 cut(s)	66, 283, 406, 533, 686
BspANI	GGCC	2 cut(s)	162, 416
BspCNI	CTCAG	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	515
BspMAI	CTGCAG	1 cut(s)	636
BspMI	ACCTGC	2 cut(s)	639, 850
BspPI	GGATC	3 cut(s)	74, 278, 528
BspTNI	GGTCTC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	578
BsrGI	TGTACA	1 cut(s)	795
BssMI	GATC	5 cut(s)	66, 283, 406, 533, 686
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	800
BstAUI	TGTACA	1 cut(s)	795
BstC8I	GCNNGC	2 cut(s)	164, 418
BstDEI	CTNAG	1 cut(s)	116
BstF5I	GGATG	2 cut(s)	191, 757
BstKTI	GATC	5 cut(s)	69, 286, 409, 536, 689
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	5 cut(s)	66, 283, 406, 533, 686
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 308, 426, 711, 824
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	2 cut(s)	632, 735
BstV1I	GCAGC	5 cut(s)	106, 158, 249, 323, 692
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
BsuRI	GGCC	2 cut(s)	162, 416
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	191, 757
BtsIMutI	CAGTG	2 cut(s)	91, 515
BveI	ACCTGC	2 cut(s)	639, 850
Cac8I	GCNNGC	2 cut(s)	164, 418
CciI	TCATGA	1 cut(s)	523
Cfr13I	GGNCC	2 cut(s)	437, 613
CsiI	ACCWGGT	1 cut(s)	184
Csp6I	GTAC	4 cut(s)	182, 189, 796, 867
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviAII	CATG	4 cut(s)	107, 167, 524, 873
CviJI	RGCY	9 cut(s)	120, 162, 302, 344, 383, 401, 416, 514, 705
CviKI_1	RGCY	9 cut(s)	120, 162, 302, 344, 383, 401, 416, 514, 705
CviQI	GTAC	4 cut(s)	182, 189, 796, 867
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	5 cut(s)	68, 285, 408, 535, 688
DpnII	GATC	5 cut(s)	66, 283, 406, 533, 686
DraI	TTTAAA	1 cut(s)	210
DraIII	CACNNNGTG	1 cut(s)	820
Eco31I	GGTCTC	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	437, 613
Eco57I	CTGAAG	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	184
FaeI	CATG	4 cut(s)	110, 170, 527, 876
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	4 cut(s)	106, 166, 523, 872
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	5 cut(s)	95, 147, 263, 312, 706
FokI	GGATG	2 cut(s)	178, 764
Fsp4HI	GCNGC	5 cut(s)	95, 147, 263, 312, 706
FspBI	CTAG	1 cut(s)	702
GluI	GCNGC	5 cut(s)	95, 147, 263, 312, 706
HaeIII	GGCC	2 cut(s)	162, 416
Hin1II	CATG	4 cut(s)	110, 170, 527, 876
HinfI	GANTC	3 cut(s)	558, 727, 766
Hpy166II	GTNNAC	2 cut(s)	142, 440
Hpy188I	TCNGA	4 cut(s)	117, 645, 686, 760
Hpy188III	TCNNGA	3 cut(s)	43, 524, 784
Hpy8I	GTNNAC	2 cut(s)	142, 440
HpyAV	CCTTC	3 cut(s)	539, 561, 599
HpyCH4III	ACNGT	1 cut(s)	800
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 308, 426, 711, 824
HpyF3I	CTNAG	1 cut(s)	116
Hsp92II	CATG	4 cut(s)	110, 170, 527, 876
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	5 cut(s)	66, 283, 406, 533, 686
LmnI	GCTCC	1 cut(s)	519
Lsp1109I	GCAGC	5 cut(s)	106, 158, 249, 323, 692
LweI	GCATC	2 cut(s)	266, 742
MabI	ACCWGGT	1 cut(s)	184
MaeI	CTAG	1 cut(s)	702
MaeIII	GTNAC	2 cut(s)	570, 626
MalI	GATC	5 cut(s)	68, 285, 408, 535, 688
MboI	GATC	5 cut(s)	66, 283, 406, 533, 686
MboII	GAAGA	2 cut(s)	368, 658
MfeI	CAATTG	3 cut(s)	225, 326, 432
MflI	RGATCY	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	640
MnlI	CCTC	1 cut(s)	838
MroXI	GAANNNNTTC	1 cut(s)	765
MseI	TTAA	3 cut(s)	209, 335, 449
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	3 cut(s)	225, 326, 432
Mva1269I	GAATGC	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	5 cut(s)	103, 308, 426, 711, 824
NdeII	GATC	5 cut(s)	66, 283, 406, 533, 686
NlaIII	CATG	4 cut(s)	110, 170, 527, 876
NlaIV	GGNNCC	1 cut(s)	515
PagI	TCATGA	1 cut(s)	523
PctI	GAATGC	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	3 cut(s)	558, 727, 766
PflMI	CCANNNNNTGG	2 cut(s)	158, 227
PkrI	GCNGC	5 cut(s)	96, 148, 264, 313, 707
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	515
PspPI	GGNCC	2 cut(s)	437, 613
PstI	CTGCAG	1 cut(s)	636
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	4 cut(s)	183, 190, 797, 868
RsaNI	GTAC	4 cut(s)	182, 189, 796, 867
SaqAI	TTAA	3 cut(s)	209, 335, 449
SatI	GCNGC	5 cut(s)	95, 147, 263, 312, 706
Sau3AI	GATC	5 cut(s)	66, 283, 406, 533, 686
Sau96I	GGNCC	2 cut(s)	437, 613
ScrFI	CCNGG	1 cut(s)	186
SexAI	ACCWGGT	1 cut(s)	184
SfaNI	GCATC	2 cut(s)	266, 742
SfcI	CTRYAG	2 cut(s)	632, 735
SinI	GGWCC	2 cut(s)	437, 613
SspMI	CTAG	1 cut(s)	702
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	800
TaqI	TCGA	2 cut(s)	379, 725
TaqII	GACCGA	1 cut(s)	494
TatI	WGTACW	1 cut(s)	795
TfiI	GAWTC	3 cut(s)	558, 727, 766
Tru1I	TTAA	3 cut(s)	209, 335, 449
Tru9I	TTAA	3 cut(s)	209, 335, 449
TscAI	CASTG	2 cut(s)	91, 515
TseI	GCWGC	5 cut(s)	94, 146, 262, 311, 705
TspDTI	ATGAA	4 cut(s)	354, 466, 543, 581
TspRI	CASTG	2 cut(s)	91, 515
Van91I	CCANNNNNTGG	2 cut(s)	158, 227
VpaK11BI	GGWCC	2 cut(s)	437, 613
XapI	RAATTY	2 cut(s)	242, 484
XmiI	GTMKAC	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.