Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Forward (+)

17336689 .. 17337020

Gene Structure 332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G115400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGAACCCATGAAGAAATCGGTCTGTGGAAAGGCAAGACAAGGTGGGAAGGTGAAGAAACCAATGAAGAGGGAAATCAAGGATTCCAAGTTTGGATTTGGAGGGAGGAAAGGTTCTAAGAAGCAAAATGTAGCTGAAACAACTAATGATTTGAGAGGCTTCAATAGAGATAGTCTCTCAAGAAATAAGAAAAGGAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

68

Amino Acids

7.64

Weight (kDa)

11.15

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	163
AloI	GAACNNNNNNTCC	2 cut(s)	97, 129
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	6
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BpuEI	CTTGAG	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
BsmAI	GTCTC	1 cut(s)	179
BspLI	GGNNCC	1 cut(s)	6
Bst6I	CTCTTC	2 cut(s)	62, 191
BstDEI	CTNAG	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	179
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	2 cut(s)	134, 159
CviKI_1	RGCY	2 cut(s)	134, 159
DdeI	CTNAG	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	62, 191
EarI	CTCTTC	2 cut(s)	62, 191
FaeI	CATG	1 cut(s)	13
FaiI	YATR	1 cut(s)	11
FatI	CATG	1 cut(s)	9
Hin1II	CATG	1 cut(s)	13
HinfI	GANTC	1 cut(s)	83
HphI	GGTGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	180
HpyAV	CCTTC	1 cut(s)	43
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	13
MboII	GAAGA	3 cut(s)	25, 67, 79
MnlI	CCTC	5 cut(s)	63, 95, 99, 149, 192
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	6
SetI	ASST	5 cut(s)	46, 54, 115, 136, 203
SgeI	CNNG	6 cut(s)	22, 48, 53, 91, 100, 192
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
TaqII	GACCGA	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	26, 80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.