Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Forward (+)

46277067 .. 46277477

Gene Structure 411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG248100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAACGGGAATGCTTTACTCTGCATGTATGCTAAGTGCAGAGTCATTAGTGATGCAATGCAGGTTTTCAATGACATGGTTGGGCCTAATGAGGTTACTTTTATGGCTATGATGGGTGAGTTAAAGAAGACGGACAAAGTCGTGGAGACTTTGGAAATGTTTAAGCTAATATGGAGGAAAAGGGTGCGTATTGATTCTGTTTCGTTGTTTGTTGATATTGAAAGGGATCCCTTGTTTGTTGCTCTTTCACTTATGAAGACAATTGTTAAACGCAAGCTAGTTCTGGAGAAATATGATCTTGTTACTAGAGTTGTAGAAATGATGATAACAAGTTATGTAGAACCAATTAGCCACATTTGTAGTCAGATTTTGTCTCATTTCTTAGCAAGTCAGATATATGAACTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

136

Amino Acids

15.77

Weight (kDa)

6.73

Isoelectric Point (pI)

24.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	52
AclWI	GGATC	2 cut(s)	221, 234
AgsI	TTSAA	2 cut(s)	70, 221
AluBI	AGCT	2 cut(s)	166, 277
AluI	AGCT	2 cut(s)	166, 277
Alw26I	GTCTC	2 cut(s)	140, 378
AlwI	GGATC	2 cut(s)	221, 234
AoxI	GGCC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	128
BamHI	GGATCC	1 cut(s)	226
BbsI	GAAGAC	2 cut(s)	134, 263
BccI	CCATC	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	140, 378
BfaI	CTAG	2 cut(s)	278, 306
BfuAI	ACCTGC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	228
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	2 cut(s)	134, 263
BpmI	CTGGAG	1 cut(s)	305
Bse3DI	GCAATG	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	63
BsgI	GTGCAG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	85
BsmAI	GTCTC	2 cut(s)	140, 378
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	226, 295
BspANI	GGCC	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	52
BspPI	GGATC	2 cut(s)	221, 234
BsrDI	GCAATG	1 cut(s)	63
BssMI	GATC	2 cut(s)	226, 295
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	2 cut(s)	33, 382
BstKTI	GATC	2 cut(s)	229, 298
BstMAI	GTCTC	2 cut(s)	140, 378
BstMBI	GATC	2 cut(s)	226, 295
BstNSI	RCATGY	1 cut(s)	28
BstV2I	GAAGAC	2 cut(s)	134, 263
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	85
BveI	ACCTGC	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	83
CviAII	CATG	2 cut(s)	25, 76
CviJI	RGCY	5 cut(s)	85, 107, 166, 277, 351
CviKI_1	RGCY	5 cut(s)	85, 107, 166, 277, 351
DdeI	CTNAG	2 cut(s)	33, 382
DpnI	GATC	2 cut(s)	228, 297
DpnII	GATC	2 cut(s)	226, 295
FaeI	CATG	2 cut(s)	28, 79
FatI	CATG	2 cut(s)	24, 75
FspBI	CTAG	2 cut(s)	278, 306
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	85
Hin1II	CATG	2 cut(s)	28, 79
HinfI	GANTC	2 cut(s)	42, 194
HphI	GGTGA	1 cut(s)	128
Hpy188I	TCNGA	2 cut(s)	366, 393
Hpy188III	TCNNGA	1 cut(s)	284
HpyCH4V	TGCA	4 cut(s)	24, 39, 56, 61
HpyF3I	CTNAG	2 cut(s)	33, 382
Hsp92II	CATG	2 cut(s)	28, 79
Kzo9I	GATC	2 cut(s)	226, 295
LpnPI	CCDG	2 cut(s)	47, 269
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	2 cut(s)	278, 306
MaeIII	GTNAC	2 cut(s)	94, 301
MalI	GATC	2 cut(s)	228, 297
MboI	GATC	2 cut(s)	226, 295
MboII	GAAGA	2 cut(s)	139, 268
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	2 cut(s)	261, 345
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	2 cut(s)	85, 168
MseI	TTAA	3 cut(s)	122, 162, 267
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	16
NdeII	GATC	2 cut(s)	226, 295
NlaIII	CATG	2 cut(s)	28, 79
NlaIV	GGNNCC	1 cut(s)	228
NspI	RCATGY	1 cut(s)	28
PctI	GAATGC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	194
PflFI	GACNNNGTC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	226
PsyI	GACNNNGTC	1 cut(s)	137
SaqAI	TTAA	3 cut(s)	122, 162, 267
Sau3AI	GATC	2 cut(s)	226, 295
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	1 cut(s)	51
SetI	ASST	4 cut(s)	66, 96, 168, 279
SfaNI	GCATC	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	2 cut(s)	261, 345
SspMI	CTAG	2 cut(s)	278, 306
TasI	AATT	2 cut(s)	261, 345
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	3 cut(s)	122, 162, 267
Tru9I	TTAA	3 cut(s)	122, 162, 267
TspDTI	ATGAA	2 cut(s)	17, 269
TspGWI	ACGGA	1 cut(s)	146
Tth111I	GACNNNGTC	1 cut(s)	137
XceI	RCATGY	1 cut(s)	28
XspI	CTAG	2 cut(s)	278, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.