Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Forward (+)

32388694 .. 32390606

Gene Structure 1913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1257700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAAGAGGATGATTTCGAAGATGTTGGGTCTGGGTCAGAATCGGAGGCAGAATCCGAAGAGGAGGGTGATGTGAAATTGGAGGACCCGTCGAAGAAGGCCATATACAACAGAGATGGTATAATGGATAAACTTGGTGATATAAGCTGGCCGGAGAATGCGGGATGGGTGCACAAACTCTCTGTTGACATTGATCAAGAGCAAAAGGTGGACGTGAATGATGACTTGACTCGAGAGCTTGCCTTTTACACACAGGCTTTAGAGGGAACGAGGAAGGCCTTTGAGAAGCTTCAGTCAATGGGGCTTCCTTTTCTGAGGCCCGAGGACTACTATGCAGAGATGGTGAAGTCAGATTCCCATATGGAGAGAGTGAAGAGCCGGCTTTTGGTAGAGAAGAAGAAGATAGAGGAAGCGGATGAGAGAAGGAAAGCGAGGGAGTCCAAGAAACTATCTAAAGAGATTCAGGCTCAGAAGTTGAAAGAGAGAGCTAAGCAGAAAAAGGAGGACATAGAATCTGTGAAGAAGTGGAGGAAGCAGAGGCAGCAGAGTGGGTTTGCCGGGGGTGACAAAGGCAGCGAGTTGGATTTGGCCTTCGAGGATGCGAAACCATTCGAGAGGTCAAATAAGAAGAGGCCATTTGTGGCTCCAGGAGATCGGTCTGGAGGGAAGGCAAGACAAGGTGGGAAGCCGACGGGAAAAAAACCAAAGAAGAGGGAAATTAAGGATTCCAAGTTTGGATACGGAGGGAGGAAAGGTTCCAAGAAGCAAAATATGGCGGAAACGACTAATGATTTGAGGGGATTCAACAAAGATAGTCTCACATCAGGAAATAAGAAAAGGAAGAGTATTCATGCGGTCCTAAATGGTCTGTACTTCGTATTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

296

Amino Acids

33.65

Weight (kDa)

9.2

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ebp2	PF05890	35 - 279	3.5e-68	Eukaryotic rRNA processing protein EBP2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	161, 413, 776, 854
AcoI	YGGCCR	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	275
AfaI	GTAC	1 cut(s)	872
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	478, 805
AjiI	CACGTC	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	646
AloI	GAACNNNNNNTCC	2 cut(s)	739, 771
AluBI	AGCT	4 cut(s)	147, 238, 289, 488
AluI	AGCT	4 cut(s)	147, 238, 289, 488
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	821
Alw44I	GTGCAC	1 cut(s)	170
Ama87I	CYCGRG	2 cut(s)	231, 320
AoxI	GGCC	6 cut(s)	99, 149, 276, 317, 588, 632
ApaLI	GTGCAC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	541, 573
ArsI	GACNNNNNNTTYG	2 cut(s)	775, 807
Asp700I	GAANNNNTTC	1 cut(s)	608
AspS9I	GGNCC	3 cut(s)	85, 318, 856
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	4 cut(s)	80, 149, 355, 575
AsuII	TTCGAA	1 cut(s)	18
AvaI	CYCGRG	2 cut(s)	231, 320
AvaII	GGWCC	2 cut(s)	85, 856
BaeGI	GKGCMC	1 cut(s)	174
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	553, 585
BccI	CCATC	3 cut(s)	110, 159, 334
BciT130I	CCWGG	1 cut(s)	648
BciVI	GTATCC	1 cut(s)	731
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	821
BfuI	GTATCC	1 cut(s)	731
BisI	GCNGC	2 cut(s)	542, 574
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	2 cut(s)	543, 575
Bme1390I	CCNGG	2 cut(s)	559, 648
Bme18I	GGWCC	2 cut(s)	85, 856
BmeT110I	CYCGRG	2 cut(s)	231, 320
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	3 cut(s)	85, 318, 856
BmiI	GGNNCC	3 cut(s)	87, 645, 757
BmrFI	CCNGG	2 cut(s)	559, 648
BmsI	GCATC	1 cut(s)	589
BpmI	CTGGAG	2 cut(s)	630, 681
Bpu1102I	GCTNAGC	1 cut(s)	489
Bpu14I	TTCGAA	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	559
BsaJI	CCNNGG	2 cut(s)	321, 558
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 739, 769
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse118I	RCCGGY	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	648
BseDI	CCNNGG	2 cut(s)	321, 558
BseGI	GGATG	4 cut(s)	16, 170, 421, 604
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	2 cut(s)	305, 482
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	553, 585
BshFI	GGCC	6 cut(s)	101, 151, 278, 319, 590, 634
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	2 cut(s)	231, 320
BsiSI	CCGG	3 cut(s)	152, 379, 558
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	821
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	6 cut(s)	101, 151, 278, 319, 590, 634
BsoBI	CYCGRG	2 cut(s)	231, 320
Bsp119I	TTCGAA	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	193, 652
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	4 cut(s)	161, 413, 776, 854
BspANI	GGCC	6 cut(s)	101, 151, 278, 319, 590, 634
BspCNI	CTCAG	2 cut(s)	306, 481
BspLI	GGNNCC	3 cut(s)	87, 645, 757
BspQI	GCTCTTC	1 cut(s)	368
BspT104I	TTCGAA	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	378
BssAI	RCCGGY	1 cut(s)	378
BssECI	CCNNGG	2 cut(s)	321, 558
BssMI	GATC	2 cut(s)	193, 652
Bst2UI	CCWGG	1 cut(s)	648
Bst6I	CTCTTC	5 cut(s)	54, 368, 623, 704, 836
BstBI	TTCGAA	1 cut(s)	18
BstC8I	GCNNGC	3 cut(s)	149, 240, 380
BstDEI	CTNAG	3 cut(s)	314, 468, 489
BstF5I	GGATG	4 cut(s)	16, 170, 421, 604
BstKTI	GATC	2 cut(s)	196, 655
BstMAI	GTCTC	1 cut(s)	821
BstMBI	GATC	2 cut(s)	193, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	541
BstNI	CCWGG	1 cut(s)	648
BstSCI	CCNGG	2 cut(s)	557, 646
BstSLI	GKGCMC	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	553, 585
BsuI	GTATCC	1 cut(s)	731
BsuRI	GGCC	6 cut(s)	101, 151, 278, 319, 590, 634
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	4 cut(s)	16, 170, 421, 604
Cac8I	GCNNGC	3 cut(s)	149, 240, 380
Cfr10I	RCCGGY	1 cut(s)	378
Cfr13I	GGNCC	3 cut(s)	85, 318, 856
Csp6I	GTAC	1 cut(s)	871
CviAII	CATG	1 cut(s)	851
CviQI	GTAC	1 cut(s)	871
DdeI	CTNAG	3 cut(s)	314, 468, 489
DpnI	GATC	2 cut(s)	195, 654
DpnII	GATC	2 cut(s)	193, 652
EaeI	YGGCCR	1 cut(s)	149
Eam1104I	CTCTTC	5 cut(s)	54, 368, 623, 704, 836
EarI	CTCTTC	5 cut(s)	54, 368, 623, 704, 836
EciI	GGCGGA	1 cut(s)	791
Eco147I	AGGCCT	1 cut(s)	278
Eco47I	GGWCC	2 cut(s)	85, 856
Eco57I	CTGAAG	1 cut(s)	275
Eco88I	CYCGRG	2 cut(s)	231, 320
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	646
FaeI	CATG	1 cut(s)	854
FatI	CATG	1 cut(s)	850
FauI	CCCGC	1 cut(s)	154
FauNDI	CATATG	1 cut(s)	360
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	542, 574
FokI	GGATG	4 cut(s)	23, 177, 428, 611
Fsp4HI	GCNGC	2 cut(s)	542, 574
GluI	GCNGC	2 cut(s)	542, 574
GsuI	CTGGAG	2 cut(s)	630, 681
HaeIII	GGCC	6 cut(s)	101, 151, 278, 319, 590, 634
HapII	CCGG	3 cut(s)	152, 379, 558
Hin1II	CATG	1 cut(s)	854
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	9 cut(s)	41, 53, 229, 353, 437, 460, 512, 725, 801
HpaII	CCGG	3 cut(s)	152, 379, 558
HphI	GGTGA	4 cut(s)	80, 149, 355, 575
Hpy166II	GTNNAC	3 cut(s)	172, 187, 211
Hpy188I	TCNGA	6 cut(s)	40, 46, 58, 315, 352, 471
Hpy188III	TCNNGA	5 cut(s)	197, 233, 613, 660, 825
Hpy8I	GTNNAC	3 cut(s)	172, 187, 211
Hpy99I	CGWCG	2 cut(s)	94, 694
HpyAV	CCTTC	5 cut(s)	91, 268, 417, 601, 661
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	2 cut(s)	172, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	541
HpyF3I	CTNAG	3 cut(s)	314, 468, 489
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	854
KroI	GCCGGC	1 cut(s)	378
KroNI	GCCGGC	1 cut(s)	380
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	193, 652
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	1 cut(s)	649
Lsp1109I	GCAGC	2 cut(s)	553, 585
LweI	GCATC	1 cut(s)	589
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	2 cut(s)	195, 654
MboI	GATC	2 cut(s)	193, 652
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	77, 717
MlyI	GAGTC	2 cut(s)	223, 446
MmeI	TCCRAC	1 cut(s)	561
MroNI	GCCGGC	1 cut(s)	378
MroXI	GAANNNNTTC	1 cut(s)	608
MseI	TTAA	1 cut(s)	720
MspI	CCGG	3 cut(s)	152, 379, 558
MspR9I	CCNGG	2 cut(s)	559, 648
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	648
MwoI	GCNNNNNNNGC	1 cut(s)	541
NaeI	GCCGGC	1 cut(s)	380
NciI	CCSGG	1 cut(s)	559
NdeI	CATATG	1 cut(s)	360
NdeII	GATC	2 cut(s)	193, 652
NgoMIV	GCCGGC	1 cut(s)	378
NlaIII	CATG	1 cut(s)	854
NlaIV	GGNNCC	3 cut(s)	87, 645, 757
NmuCI	GTSAC	1 cut(s)	563
NspV	TTCGAA	1 cut(s)	18
PaeR7I	CTCGAG	1 cut(s)	231
PceI	AGGCCT	1 cut(s)	278
PciSI	GCTCTTC	1 cut(s)	368
PctI	GAATGC	1 cut(s)	163
PdiI	GCCGGC	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	7 cut(s)	41, 53, 353, 460, 512, 725, 801
PfoI	TCCNGGA	1 cut(s)	646
PkrI	GCNGC	2 cut(s)	543, 575
PleI	GAGTC	2 cut(s)	223, 445
PpsI	GAGTC	2 cut(s)	223, 445
PpuMI	RGGWCCY	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	646
PspGI	CCWGG	1 cut(s)	646
PspN4I	GGNNCC	3 cut(s)	87, 645, 757
PspPI	GGNCC	3 cut(s)	85, 318, 856
PspPPI	RGGWCCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	872
RsaNI	GTAC	1 cut(s)	871
SapI	GCTCTTC	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	720
SatI	GCNGC	2 cut(s)	542, 574
Sau3AI	GATC	2 cut(s)	193, 652
Sau96I	GGNCC	3 cut(s)	85, 318, 856
SchI	GAGTC	2 cut(s)	223, 446
ScrFI	CCNGG	2 cut(s)	559, 648
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	9 cut(s)	149, 210, 216, 240, 291, 490, 620, 682, 757
SfaNI	GCATC	1 cut(s)	589
Sfr274I	CTCGAG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	18
SinI	GGWCC	2 cut(s)	85, 856
SlaI	CTCGAG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	2 cut(s)	77, 717
SseBI	AGGCCT	1 cut(s)	278
SsiI	CCGC	4 cut(s)	161, 413, 776, 854
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	2 cut(s)	557, 646
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	5 cut(s)	18, 92, 232, 594, 612
TaqII	GACCGA	1 cut(s)	645
TasI	AATT	2 cut(s)	77, 717
TatI	WGTACW	1 cut(s)	870
TfiI	GAWTC	7 cut(s)	41, 53, 353, 460, 512, 725, 801
Tru1I	TTAA	1 cut(s)	720
Tru9I	TTAA	1 cut(s)	720
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	2 cut(s)	541, 573
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	1 cut(s)	839
TspGWI	ACGGA	1 cut(s)	756
VneI	GTGCAC	1 cut(s)	170
VpaK11BI	GGWCC	2 cut(s)	85, 856
XhoI	CTCGAG	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.