Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Forward (+)

18609418 .. 18610320

Gene Structure 903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG107200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTGTATCTAAGAAAGAATCGATGCTGGTTAACGAGGAGGAACTGGAAGACGATAGTGATATGGGGGACGATGTGTCTGAGTCAGAATTGGAACAAGAATCGGAAGAGGAATCTGAAGAGGAAGGAGATGTGAGATTGGCTGAACCCTCCCAGAATGCTACATACAACAGAGATGAAATGGTGAAGTCGGATTCCCACATGGAGAAAGTGAAGAGCCGGCTTTTGGTGGAGAAGAAGAACATGGAGGAAGCTGATGAGAGAAGGAAGGCCAGAGAGGCCAAGAAATTGTCTAAAGAGATTCAGAACCAGAAGTTGAAGGAGAGAGCTAAGCAGAAAAAGGAGTCTATTGAGTTTGTGAAGAAGTGGAGGAAGCAGAGGCATCAAAGTGGGTTTGCTGGGGGTGACAAGGGAAGCGAGTTGGATTTGGCCTTTGAAGATGGGAAACCATTTGAGAAGTCAAGTAATAAGAGGCCTGGCGTAGCTCCCAGAGATCGGTCTGGAGGGAAGGCAAAATATGCTGGAAAGGGGAAGAAGCCGAAGAAGAGAGAAATCAAGGATTCCAAGTTTGGATTTGGTGGGAGGAAAGGTTCCAGGAAGCAAAATGTCGCTGAAACCACCAACGATTTGAGAGGCTTCAATAAAGAAGATGGTTTCTCAAAAAATAAGAAAAGGAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

227

Amino Acids

25.97

Weight (kDa)

9.23

Isoelectric Point (pI)

61.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ebp2	PF05890	60 - 223	1.3e-34	Eukaryotic rRNA processing protein EBP2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	138
AfiI	CCNNNNNNNGG	2 cut(s)	226, 495
AgsI	TTSAA	3 cut(s)	319, 437, 640
AhdI	GACNNNNNGTC	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	475, 593
AloI	GAACNNNNNNTCC	2 cut(s)	574, 606
AluBI	AGCT	3 cut(s)	254, 329, 485
AluI	AGCT	3 cut(s)	254, 329, 485
AoxI	GGCC	4 cut(s)	270, 279, 429, 473
AsuHPI	GGTGA	2 cut(s)	196, 416
BbsI	GAAGAC	1 cut(s)	57
BccI	CCATC	2 cut(s)	434, 644
BciT130I	CCWGG	2 cut(s)	477, 595
BglI	GCCNNNNNGGC	1 cut(s)	278
BlpI	GCTNAGC	1 cut(s)	330
Bme1390I	CCNGG	2 cut(s)	477, 595
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	592
BmrFI	CCNGG	2 cut(s)	477, 595
BmsI	GCATC	2 cut(s)	15, 391
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	522
Bpu1102I	GCTNAGC	1 cut(s)	330
Bsa29I	ATCGAT	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 495
Bse118I	RCCGGY	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	477, 595
BseCI	ATCGAT	1 cut(s)	23
BseLI	CCNNNNNNNGG	2 cut(s)	226, 495
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	53
BseYI	CCCAGC	1 cut(s)	398
BshFI	GGCC	4 cut(s)	272, 281, 431, 475
BshVI	ATCGAT	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	226, 495
BsmFI	GGGAC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	4 cut(s)	272, 281, 431, 475
Bsp143I	GATC	1 cut(s)	493
Bsp1720I	GCTNAGC	1 cut(s)	330
BspANI	GGCC	4 cut(s)	272, 281, 431, 475
BspCNI	CTCAG	1 cut(s)	73
BspDI	ATCGAT	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	592
BspQI	GCTCTTC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	219
BssMI	GATC	1 cut(s)	493
Bst2UI	CCWGG	2 cut(s)	477, 595
Bst6I	CTCTTC	4 cut(s)	102, 114, 209, 539
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	3 cut(s)	12, 81, 330
BstKTI	GATC	1 cut(s)	496
BstMBI	GATC	1 cut(s)	493
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 518
BstNI	CCWGG	2 cut(s)	477, 595
BstSCI	CCNGG	2 cut(s)	475, 593
BstV2I	GAAGAC	1 cut(s)	57
Bsu15I	ATCGAT	1 cut(s)	23
BsuRI	GGCC	4 cut(s)	272, 281, 431, 475
BsuTUI	ATCGAT	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	221
Cfr10I	RCCGGY	1 cut(s)	219
ClaI	ATCGAT	1 cut(s)	23
CviAII	CATG	2 cut(s)	202, 244
DdeI	CTNAG	3 cut(s)	12, 81, 330
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
DriI	GACNNNNNGTC	1 cut(s)	76
Eam1104I	CTCTTC	4 cut(s)	102, 114, 209, 539
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EarI	CTCTTC	4 cut(s)	102, 114, 209, 539
Eco147I	AGGCCT	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	138
EcoRII	CCWGG	2 cut(s)	475, 593
FaeI	CATG	2 cut(s)	205, 247
FaiI	YATR	5 cut(s)	65, 166, 203, 245, 519
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	201, 243
GsaI	CCCAGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	522
HaeIII	GGCC	4 cut(s)	272, 281, 431, 475
HapII	CCGG	1 cut(s)	220
Hin1II	CATG	2 cut(s)	205, 247
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	8 cut(s)	20, 83, 101, 113, 194, 301, 344, 560
HpaI	GTTAAC	1 cut(s)	34
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	2 cut(s)	196, 416
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	6 cut(s)	82, 88, 106, 118, 193, 306
Hpy188III	TCNNGA	1 cut(s)	501
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	5 cut(s)	119, 258, 262, 313, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 518
HpyF3I	CTNAG	3 cut(s)	12, 81, 330
Hsp92II	CATG	2 cut(s)	205, 247
KroI	GCCGGC	1 cut(s)	219
KroNI	GCCGGC	1 cut(s)	221
KspAI	GTTAAC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	493
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	490
LweI	GCATC	2 cut(s)	15, 391
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	1 cut(s)	495
MboI	GATC	1 cut(s)	493
MluCI	AATT	2 cut(s)	89, 287
MlyI	GAGTC	2 cut(s)	92, 353
MmeI	TCCRAC	2 cut(s)	171, 402
MroNI	GCCGGC	1 cut(s)	219
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	2 cut(s)	477, 595
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	2 cut(s)	477, 595
MwoI	GCNNNNNNNGC	2 cut(s)	278, 518
NaeI	GCCGGC	1 cut(s)	221
NdeII	GATC	1 cut(s)	493
NgoMIV	GCCGGC	1 cut(s)	219
NlaIII	CATG	2 cut(s)	205, 247
NlaIV	GGNNCC	1 cut(s)	592
NmuCI	GTSAC	1 cut(s)	404
PceI	AGGCCT	1 cut(s)	475
PciSI	GCTCTTC	1 cut(s)	209
PctI	GAATGC	1 cut(s)	163
PdiI	GCCGGC	1 cut(s)	221
PfeI	GAWTC	6 cut(s)	20, 101, 113, 194, 301, 560
PfoI	TCCNGGA	1 cut(s)	593
PleI	GAGTC	2 cut(s)	91, 352
PpsI	GAGTC	2 cut(s)	91, 352
Psp6I	CCWGG	2 cut(s)	475, 593
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	2 cut(s)	475, 593
PspN4I	GGNNCC	1 cut(s)	592
RseI	CAYNNNNRTG	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	493
SchI	GAGTC	2 cut(s)	92, 353
ScrFI	CCNGG	2 cut(s)	477, 595
SetI	ASST	4 cut(s)	256, 331, 487, 592
SfaNI	GCATC	2 cut(s)	15, 391
SfiI	GGCCNNNNNGGCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	387
Sse9I	AATT	2 cut(s)	89, 287
SseBI	AGGCCT	1 cut(s)	475
StuI	AGGCCT	1 cut(s)	475
StyD4I	CCNGG	2 cut(s)	475, 593
TaqI	TCGA	1 cut(s)	23
TaqII	GACCGA	1 cut(s)	486
TasI	AATT	2 cut(s)	89, 287
TfiI	GAWTC	6 cut(s)	20, 101, 113, 194, 301, 560
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.