Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005008.1

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Forward (+)

111304 .. 111750

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005008.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgcccaacgggattcgcggggaagagaaaggcgatgtgagatcgactgaaccctcccagaattctccatacaacaaagaaagtctgttagagaagcttagagatatgagttggcctgagaatgctaaacgggtggacaagcttacgtcggatactgagcaagagcaaccggtggatgtgcatgatgacctgacaagggagcttgcatttcatacacaggctctaaatggaatgaggatggcctttgataagcttcagttaatggggcttccatttttgagagaaatggtgaagtcggagtcccaattggagaaagtgaagagccaacttttggtggagatgactaccaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

117

Amino Acids

13.46

Weight (kDa)

5.07

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccII	CGCG	1 cut(s)	18
AciI	CCGC	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	196, 331
AgeI	ACCGGT	1 cut(s)	169
AluBI	AGCT	4 cut(s)	97, 142, 202, 253
AluI	AGCT	4 cut(s)	97, 142, 202, 253
AoxI	GGCC	2 cut(s)	113, 240
ApoI	RAATTY	1 cut(s)	61
AsiGI	ACCGGT	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	301
BccI	CCATC	1 cut(s)	232
BciVI	GTATCC	1 cut(s)	145
BfuI	GTATCC	1 cut(s)	145
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 331
Bse118I	RCCGGY	1 cut(s)	169
BseGI	GGATG	2 cut(s)	181, 243
BseLI	CCNNNNNNNGG	2 cut(s)	196, 331
BseMII	CTCAG	2 cut(s)	108, 147
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	115, 242
BshTI	ACCGGT	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	2 cut(s)	196, 331
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	2 cut(s)	115, 242
Bsp143I	GATC	1 cut(s)	41
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	2 cut(s)	115, 242
BspCNI	CTCAG	2 cut(s)	109, 148
BspFNI	CGCG	1 cut(s)	18
BspQI	GCTCTTC	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	169
BssMI	GATC	1 cut(s)	41
Bst6I	CTCTTC	2 cut(s)	18, 314
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	3 cut(s)	98, 117, 156
BstF5I	GGATG	2 cut(s)	181, 243
BstFNI	CGCG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	41
BstUI	CGCG	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	115, 242
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	181, 243
Cac8I	GCNNGC	1 cut(s)	204
Cfr10I	RCCGGY	1 cut(s)	169
CspAI	ACCGGT	1 cut(s)	169
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	9 cut(s)	97, 115, 142, 202, 221, 242, 253, 268, 324
CviKI_1	RGCY	9 cut(s)	97, 115, 142, 202, 221, 242, 253, 268, 324
DdeI	CTNAG	3 cut(s)	98, 117, 156
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
Eam1104I	CTCTTC	2 cut(s)	18, 314
EarI	CTCTTC	2 cut(s)	18, 314
Eco57I	CTGAAG	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	61
FaeI	CATG	1 cut(s)	185
FaiI	YATR	4 cut(s)	70, 107, 183, 213
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	1 cut(s)	181
FauI	CCCGC	1 cut(s)	11
FokI	GGATG	2 cut(s)	188, 250
HaeIII	GGCC	2 cut(s)	115, 242
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	1 cut(s)	185
HindIII	AAGCTT	3 cut(s)	95, 140, 251
HinfI	GANTC	2 cut(s)	13, 299
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	151, 298
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	2 cut(s)	181, 206
HpyF3I	CTNAG	3 cut(s)	98, 117, 156
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	41
LguI	GCTCTTC	1 cut(s)	314
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	5 cut(s)	71, 129, 183, 203, 203
MaeII	ACGT	1 cut(s)	146
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MboII	GAAGA	2 cut(s)	35, 331
MfeI	CAATTG	2 cut(s)	305, 349
MluCI	AATT	3 cut(s)	61, 305, 349
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	2 cut(s)	129, 276
MnlI	CCTC	2 cut(s)	64, 228
MseI	TTAA	1 cut(s)	260
MspI	CCGG	1 cut(s)	170
MunI	CAATTG	2 cut(s)	305, 349
Mva1269I	GAATGC	1 cut(s)	127
MvnI	CGCG	1 cut(s)	18
NdeII	GATC	1 cut(s)	41
NlaIII	CATG	1 cut(s)	185
PciSI	GCTCTTC	1 cut(s)	314
PctI	GAATGC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	331
PinAI	ACCGGT	1 cut(s)	169
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
SapI	GCTCTTC	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	260
Sau3AI	GATC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	308
SetI	ASST	6 cut(s)	99, 144, 149, 192, 204, 255
Sse9I	AATT	3 cut(s)	61, 305, 349
SsiI	CCGC	1 cut(s)	18
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	44
TasI	AATT	3 cut(s)	61, 305, 349
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	200
Van91I	CCANNNNNTGG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.