Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Forward (+)

28052497 .. 28054362

Gene Structure 1866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G282000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGTGTATCCAATAAAGAGTCCAGACAGTTTAATGAGGATTCCATGGAAGAGGATGATTTGGAAGATGTGTCTGAGCCAGAATCCGAACCAGAATCTGAAGATGAGGAAGATGTGAAATTGACTGAACCATCAAAGAAAGCCATATTCAACAGAGATGGTCTCCTTGATAAACTTGGGGATATTAGCTGGCCGGAGAATGCTGGATGGGTGCACAAACTTTCTGTTGATATTGATCAAGAGCAACAGGTGGACGTGAATGATGACCTAACTCGGGAGCTCGCGTTTTATACCCAGGCTGTAGAGGGAACGAGAAAGGCATTCGAGAAGCTTCAGTCAATGGGGCTTCCTTTTCTCAGGCCTGAGGACTACTATGCGGAAATGGTGAAGACAGATTCCCACATGGAGAGAGTGAAGAGCCGGCTTTTGGTAGAGAAGAAGAAGATTGAGGAAGCCGATGAGAGAAGGAAAGCTAGAGATGCCAAGAAATTATCTAAAGAGATTCAGGCTCAGAAGTTGAAAGAGAGAGCTAAGCAGAAAAAGGAGGACATAGAGTCTGTGAAGAAGTGGAGGAAGCAGAGGCAGCAGAGTGGGTTTGCTGGGGGTGACAAAGGCAGTGAGTTGGATTTGGCATTCGAAGACGGGAAACCATTTGAGAAGTCAAGTAATAAGAGGCCAGGTGTAGCTCCAGGAGATCGGTCGGGAGGGAAGGCAAGACAAGGTGTGAAGGTGGGGAAGAAACCAAAGAAGAGGGATATCAAGGATTCCAAGTTTGGATATGGAGGGAGGAAAGGTTCCAAGAAGCAAAATATGGCTGAAACCACCAATGATTTGAGAGGCTTCAATAAAGATTCTCTCTCAGGAAATAAGAAAAGGAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

295

Amino Acids

33.55

Weight (kDa)

8.96

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	284
AciI	CCGC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	191
AcuI	CTGAAG	2 cut(s)	120, 317
AfiI	CCNNNNNNNGG	2 cut(s)	274, 427
AgsI	TTSAA	3 cut(s)	151, 520, 844
AhdI	GACNNNNNGTC	1 cut(s)	553
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	3 cut(s)	294, 676, 688
AloI	GAACNNNNNNTCC	2 cut(s)	778, 810
AluBI	AGCT	6 cut(s)	189, 280, 331, 473, 530, 686
AluI	AGCT	6 cut(s)	189, 280, 331, 473, 530, 686
Alw21I	GWGCWC	2 cut(s)	216, 282
Alw26I	GTCTC	1 cut(s)	167
Alw44I	GTGCAC	1 cut(s)	212
AlwNI	CAGNNNCTG	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	273
AoxI	GGCC	3 cut(s)	191, 359, 674
ApaLI	GTGCAC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	583
AsuHPI	GGTGA	2 cut(s)	397, 617
AsuII	TTCGAA	1 cut(s)	636
AvaI	CYCGRG	1 cut(s)	273
AxyI	CCTNAGG	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	282
BbsI	GAAGAC	2 cut(s)	395, 645
Bbv12I	GWGCWC	2 cut(s)	216, 282
BbvI	GCAGC	1 cut(s)	595
BccI	CCATC	3 cut(s)	139, 152, 201
BciT130I	CCWGG	3 cut(s)	296, 678, 690
BciVI	GTATCC	1 cut(s)	19
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	474
BfmI	CTRYAG	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	19
BisI	GCNGC	1 cut(s)	584
BlpI	GCTNAGC	1 cut(s)	531
BlsI	GCNGC	1 cut(s)	585
Bme1390I	CCNGG	3 cut(s)	296, 678, 690
BmeRI	GACNNNNNGTC	1 cut(s)	553
BmeT110I	CYCGRG	1 cut(s)	273
BmgBI	CACGTC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	796
BmrFI	CCNGG	3 cut(s)	296, 678, 690
BmsI	GCATC	1 cut(s)	469
BpiI	GAAGAC	2 cut(s)	395, 645
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
BpmI	CTGGAG	1 cut(s)	672
Bpu1102I	GCTNAGC	1 cut(s)	531
Bpu14I	TTCGAA	1 cut(s)	636
BsaBI	GATNNNNATC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	45, 294
BsaXI	ACNNNNNCTCC	4 cut(s)	269, 299, 778, 808
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 427
Bse118I	RCCGGY	1 cut(s)	420
Bse21I	CCTNAGG	1 cut(s)	363
Bse8I	GATNNNNATC	1 cut(s)	234
BseBI	CCWGG	3 cut(s)	296, 678, 690
BseDI	CCNNGG	2 cut(s)	45, 294
BseGI	GGATG	2 cut(s)	61, 212
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	274, 427
BseMII	CTCAG	5 cut(s)	66, 354, 370, 524, 873
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	595
BseYI	CCCAGC	1 cut(s)	599
Bsh1236I	CGCG	1 cut(s)	284
Bsh1285I	CGRYCG	1 cut(s)	701
BshFI	GGCC	3 cut(s)	193, 361, 676
BsiEI	CGRYCG	1 cut(s)	701
BsiHKAI	GWGCWC	2 cut(s)	216, 282
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	194, 421
BslI	CCNNNNNNNGG	2 cut(s)	274, 427
BsmAI	GTCTC	1 cut(s)	167
BsmI	GAATGC	3 cut(s)	205, 320, 632
BsnI	GGCC	3 cut(s)	193, 361, 676
Bso31I	GGTCTC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	636
Bsp1286I	GDGCHC	2 cut(s)	216, 282
Bsp143I	GATC	2 cut(s)	235, 694
Bsp1720I	GCTNAGC	1 cut(s)	531
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	3 cut(s)	193, 361, 676
BspCNI	CTCAG	5 cut(s)	67, 355, 369, 523, 872
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	796
BspQI	GCTCTTC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	636
BspTNI	GGTCTC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	420
BssAI	RCCGGY	1 cut(s)	420
BssECI	CCNNGG	2 cut(s)	45, 294
BssMI	GATC	2 cut(s)	235, 694
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	296, 678, 690
Bst4CI	ACNGT	1 cut(s)	30
Bst6I	CTCTTC	4 cut(s)	45, 410, 743, 872
BstBI	TTCGAA	1 cut(s)	636
BstC8I	GCNNGC	3 cut(s)	191, 282, 422
BstDEI	CTNAG	6 cut(s)	75, 356, 363, 510, 531, 859
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	61, 212
BstFNI	CGCG	1 cut(s)	284
BstKTI	GATC	2 cut(s)	238, 697
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	235, 694
BstMCI	CGRYCG	1 cut(s)	701
BstMWI	GCNNNNNNNGC	2 cut(s)	479, 583
BstNI	CCWGG	3 cut(s)	296, 678, 690
BstSCI	CCNGG	3 cut(s)	294, 676, 688
BstSFI	CTRYAG	1 cut(s)	300
BstSLI	GKGCMC	1 cut(s)	216
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	595
BstV2I	GAAGAC	2 cut(s)	395, 645
Bsu36I	CCTNAGG	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	19
BsuRI	GGCC	3 cut(s)	193, 361, 676
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	61, 212
BtsI	GCAGTG	1 cut(s)	622
BtsIMutI	CAGTG	1 cut(s)	622
Cac8I	GCNNGC	3 cut(s)	191, 282, 422
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	420
CviAII	CATG	2 cut(s)	46, 403
DdeI	CTNAG	6 cut(s)	75, 356, 363, 510, 531, 859
DpnI	GATC	2 cut(s)	237, 696
DpnII	GATC	2 cut(s)	235, 694
DriI	GACNNNNNGTC	1 cut(s)	553
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	4 cut(s)	45, 410, 743, 872
Eam1105I	GACNNNNNGTC	1 cut(s)	553
EarI	CTCTTC	4 cut(s)	45, 410, 743, 872
Ecl136II	GAGCTC	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	45
Eco147I	AGGCCT	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	757
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	2 cut(s)	120, 317
Eco81I	CCTNAGG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	280
EcoRII	CCWGG	3 cut(s)	294, 676, 688
EcoRV	GATATC	1 cut(s)	757
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	49, 406
FaiI	YATR	8 cut(s)	47, 146, 291, 375, 404, 551, 780, 812
FatI	CATG	2 cut(s)	45, 402
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	584
FokI	GGATG	2 cut(s)	68, 219
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	584
FspBI	CTAG	1 cut(s)	474
GluI	GCNGC	1 cut(s)	584
GsaI	CCCAGC	1 cut(s)	603
GsuI	CTGGAG	1 cut(s)	672
HaeIII	GGCC	3 cut(s)	193, 361, 676
HapII	CCGG	2 cut(s)	194, 421
Hin1II	CATG	2 cut(s)	49, 406
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	9 cut(s)	20, 41, 83, 95, 395, 502, 554, 764, 851
HpaII	CCGG	2 cut(s)	194, 421
HphI	GGTGA	2 cut(s)	397, 617
Hpy166II	GTNNAC	2 cut(s)	214, 253
Hpy188I	TCNGA	4 cut(s)	76, 88, 100, 513
Hpy188III	TCNNGA	6 cut(s)	24, 239, 275, 325, 702, 861
Hpy8I	GTNNAC	2 cut(s)	214, 253
HpyAV	CCTTC	3 cut(s)	459, 703, 721
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	479, 583
HpyF3I	CTNAG	6 cut(s)	75, 356, 363, 510, 531, 859
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	49, 406
KroI	GCCGGC	1 cut(s)	420
KroNI	GCCGGC	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	235, 694
LguI	GCTCTTC	1 cut(s)	410
LmnI	GCTCC	2 cut(s)	277, 691
Lsp1109I	GCAGC	1 cut(s)	595
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	605
MalI	GATC	2 cut(s)	237, 696
MboI	GATC	2 cut(s)	235, 694
MhlI	GDGCHC	2 cut(s)	216, 282
MluCI	AATT	2 cut(s)	119, 488
MlyI	GAGTC	2 cut(s)	29, 563
MmeI	TCCRAC	1 cut(s)	603
MroNI	GCCGGC	1 cut(s)	420
MseI	TTAA	1 cut(s)	33
MspI	CCGG	2 cut(s)	194, 421
MspR9I	CCNGG	3 cut(s)	296, 678, 690
Mva1269I	GAATGC	3 cut(s)	205, 320, 632
MvaI	CCWGG	3 cut(s)	296, 678, 690
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	2 cut(s)	479, 583
NaeI	GCCGGC	1 cut(s)	422
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	235, 694
NgoMIV	GCCGGC	1 cut(s)	420
NlaIII	CATG	2 cut(s)	49, 406
NlaIV	GGNNCC	1 cut(s)	796
NmuCI	GTSAC	1 cut(s)	605
NspV	TTCGAA	1 cut(s)	636
PceI	AGGCCT	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	410
PctI	GAATGC	3 cut(s)	205, 320, 632
PdiI	GCCGGC	1 cut(s)	422
PfeI	GAWTC	7 cut(s)	41, 83, 95, 395, 502, 764, 851
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	1 cut(s)	585
PleI	GAGTC	2 cut(s)	28, 562
PpsI	GAGTC	2 cut(s)	28, 562
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	3 cut(s)	294, 676, 688
PspFI	CCCAGC	1 cut(s)	599
PspGI	CCWGG	3 cut(s)	294, 676, 688
PspN4I	GGNNCC	1 cut(s)	796
PstNI	CAGNNNCTG	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	282
SapI	GCTCTTC	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	584
Sau3AI	GATC	2 cut(s)	235, 694
SchI	GAGTC	2 cut(s)	29, 563
ScrFI	CCNGG	3 cut(s)	296, 678, 690
SduI	GDGCHC	2 cut(s)	216, 282
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	1 cut(s)	300
SfuI	TTCGAA	1 cut(s)	636
Sse9I	AATT	2 cut(s)	119, 488
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	1 cut(s)	377
SspMI	CTAG	1 cut(s)	474
SstI	GAGCTC	1 cut(s)	282
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	3 cut(s)	294, 676, 688
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	30
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	324, 636
TaqII	GACCGA	1 cut(s)	687
TasI	AATT	2 cut(s)	119, 488
TfiI	GAWTC	7 cut(s)	41, 83, 95, 395, 502, 764, 851
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	1 cut(s)	583
Tsp45I	GTSAC	1 cut(s)	605
TspRI	CASTG	1 cut(s)	622
VneI	GTGCAC	1 cut(s)	212
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.