Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001371.1

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Forward (+)

116586 .. 117902

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001371.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgttgataaaaaatattgctggaggtgttaatggagttaaattttctgatattgctgatgacagttatggtgaccattcttttagttataatgaggattctcatagacttgatgggcagattgtaacggttgagggaaatgatgatttcatgagaaacaacaaagaaggtctgttagcgaagctcagagatatgagttggcctgagaatgctaaatgggtggacaaccttacgtcggatattgagcaagagcaaccggtgcatgtgcatgatggcctgacaagggagcttgcatttaatacacaggctctaactcgaatgaggatggcctttgacaactctcagatgcttaatagacaagtggtgaaatctgagtttcctactattaaggtgctgggaatggatcttgaattagtgacggcaattctttatacatatttgctcttccatcttgcgttttgccaagtgacagttttctgtgaggctgcagtttgttcttggctgaaaagaactaagaaggttccgaagaggagtgcaaaatcaaatcagaaatatgagaataacaaagacgacgaagaggatcaagaagaagccgatgaagatgagaaggaagagaatgatgcccaggactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

210

Amino Acids

24.09

Weight (kDa)

4.69

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AclWI	GGATC	2 cut(s)	411, 588
AcsI	RAATTY	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	235, 283
AgeI	ACCGGT	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	624
AluBI	AGCT	2 cut(s)	184, 289
AluI	AGCT	2 cut(s)	184, 289
AlwI	GGATC	2 cut(s)	411, 588
AoxI	GGCC	3 cut(s)	200, 274, 327
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	41
AsiGI	ACCGGT	1 cut(s)	256
AsuHPI	GGTGA	2 cut(s)	83, 376
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	4 cut(s)	107, 266, 319, 456
BceAI	ACGGC	1 cut(s)	435
BciT130I	CCWGG	1 cut(s)	626
BfmI	CTRYAG	1 cut(s)	486
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme1390I	CCNGG	1 cut(s)	626
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	1 cut(s)	626
BmsI	GCATC	2 cut(s)	336, 610
BpmI	CTGGAG	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	624
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 283
Bse118I	RCCGGY	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	626
BseDI	CCNNGG	1 cut(s)	624
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	235, 283
BseMII	CTCAG	4 cut(s)	195, 199, 356, 363
BseRI	GAGGAG	1 cut(s)	544
BseXI	GCAGC	1 cut(s)	472
BseYI	CCCAGC	1 cut(s)	394
BshFI	GGCC	3 cut(s)	202, 276, 329
BshTI	ACCGGT	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	2 cut(s)	235, 283
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	3 cut(s)	202, 276, 329
Bsp143I	GATC	2 cut(s)	403, 580
BspANI	GGCC	3 cut(s)	202, 276, 329
BspCNI	CTCAG	4 cut(s)	196, 198, 355, 364
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	522
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	2 cut(s)	411, 588
BspQI	GCTCTTC	1 cut(s)	449
BsrFI	RCCGGY	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	624
BssMI	GATC	2 cut(s)	403, 580
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	3 cut(s)	65, 130, 472
Bst6I	CTCTTC	4 cut(s)	449, 521, 570, 606
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	5 cut(s)	185, 204, 342, 372, 513
BstEII	GGTNACC	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	2 cut(s)	406, 583
BstMBI	GATC	2 cut(s)	403, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstNI	CCWGG	1 cut(s)	626
BstNSI	RCATGY	1 cut(s)	266
BstPI	GGTNACC	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	624
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	472
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	3 cut(s)	202, 276, 329
BtsCI	GGATG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	291
CciI	TCATGA	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	256
CspAI	ACCGGT	1 cut(s)	256
CviAII	CATG	3 cut(s)	151, 263, 269
CviJI	RGCY	9 cut(s)	184, 202, 276, 289, 308, 329, 485, 502, 593
CviKI_1	RGCY	9 cut(s)	184, 202, 276, 289, 308, 329, 485, 502, 593
DdeI	CTNAG	5 cut(s)	185, 204, 342, 372, 513
DpnI	GATC	2 cut(s)	405, 582
DpnII	GATC	2 cut(s)	403, 580
Eam1104I	CTCTTC	4 cut(s)	449, 521, 570, 606
EarI	CTCTTC	4 cut(s)	449, 521, 570, 606
Eco91I	GGTNACC	1 cut(s)	71
EcoO65I	GGTNACC	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	624
FaeI	CATG	3 cut(s)	154, 266, 272
FatI	CATG	3 cut(s)	150, 262, 268
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	1 cut(s)	486
GluI	GCNGC	1 cut(s)	486
GsaI	CCCAGC	1 cut(s)	398
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	202, 276, 329
HapII	CCGG	1 cut(s)	257
Hin1II	CATG	3 cut(s)	154, 266, 272
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	2 cut(s)	83, 376
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	7 cut(s)	49, 188, 238, 345, 373, 525, 549
Hpy188III	TCNNGA	3 cut(s)	151, 407, 584
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	2 cut(s)	238, 575
HpyAV	CCTTC	3 cut(s)	161, 511, 601
HpyCH4III	ACNGT	3 cut(s)	65, 130, 472
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	5 cut(s)	262, 268, 293, 488, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	5 cut(s)	185, 204, 342, 372, 513
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	3 cut(s)	154, 266, 272
Kzo9I	GATC	2 cut(s)	403, 580
LguI	GCTCTTC	1 cut(s)	449
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	7 cut(s)	6, 216, 270, 290, 290, 380, 611
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	2 cut(s)	336, 610
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	4 cut(s)	71, 124, 415, 466
MalI	GATC	2 cut(s)	405, 582
MboI	GATC	2 cut(s)	403, 580
MboII	GAAGA	6 cut(s)	436, 538, 587, 599, 611, 623
MflI	RGATCY	1 cut(s)	403
MluCI	AATT	3 cut(s)	41, 410, 423
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	7 cut(s)	17, 88, 127, 315, 475, 522, 571
MseI	TTAA	5 cut(s)	30, 39, 297, 351, 387
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	626
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	626
MwoI	GCNNNNNNNGC	1 cut(s)	259
NdeII	GATC	2 cut(s)	403, 580
NlaIII	CATG	3 cut(s)	154, 266, 272
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	3 cut(s)	71, 415, 466
NspI	RCATGY	1 cut(s)	266
PagI	TCATGA	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	449
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	98
PinAI	ACCGGT	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	487
PsiI	TTATAA	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	624
PspEI	GGTNACC	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	624
PspN4I	GGNNCC	1 cut(s)	522
PstI	CTGCAG	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	403
RseI	CAYNNNNRTG	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	449
SaqAI	TTAA	5 cut(s)	30, 39, 297, 351, 387
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	2 cut(s)	403, 580
ScrFI	CCNGG	1 cut(s)	626
SetI	ASST	8 cut(s)	28, 172, 186, 231, 236, 291, 393, 522
SfaNI	GCATC	2 cut(s)	336, 610
SfcI	CTRYAG	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	3 cut(s)	41, 410, 423
SspI	AATATT	1 cut(s)	16
StyD4I	CCNGG	1 cut(s)	624
TaaI	ACNGT	3 cut(s)	65, 130, 472
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	316
TasI	AATT	3 cut(s)	41, 410, 423
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	5 cut(s)	30, 39, 297, 351, 387
Tru9I	TTAA	5 cut(s)	30, 39, 297, 351, 387
TseFI	GTSAC	3 cut(s)	71, 415, 466
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	3 cut(s)	71, 415, 466
TspDTI	ATGAA	2 cut(s)	139, 612
XapI	RAATTY	1 cut(s)	41
XceI	RCATGY	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.