Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007581.1

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Reverse (-)

6577 .. 7515

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007581.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgggtaactgtgagcccctagctctaatcacgggtcggatccgaaccatatcctcttccttttcttcatcatctgacccacaaacccacgaagatacaacaaacccatcttctctgctgccactttctgatgttcccgtgcagaaggcggttctccgcttcgagaagcttcaccaccaacccctctccattactgtcgcaggggaggtcagccttgcgggcgaagcggccacttctgaccaccaccaagcgaagcaggatgagggacaggatgacttgatgagaaatgacaacgaagatgaattcgcacaagtagatgaggagagtagagaaagagaacagaacttggagcatagccaagttgaagagatgagtgtccatatttccggcactgtgatgcgtgatgggctccgcggcgtgccggctattcggtcgtcaggaaattcgatgctggctaacgacgaggaactggaacacgatagtgatgtgggagcccatgtgtctgattccgaattggagcaagactcggaagagaaaggagatgtgagattgactaaaccctcccagaattctacatacaacaaaagaggtctgctagagaagctcagagatatgagttggactgagaatgctaaatgggtggacaagcttacgtcggatattgagcaagagcaaccggtggatgtgcatgatgacctgacaagggagcttgcattttatacacaggctctaaatcgaatgaggatggcctttgagaagtttcagttaatggggcttccatttctgagacctgaggactactatgcagaaatggtgaagtccgagtcccaattggggaaagtgaagagccaatttttggtggaaatgactaccaatcttactcaaacctctttgtctcaggtatccactactcatgaatttaaattttcaagatgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

312

Amino Acids

35.19

Weight (kDa)

4.73

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	856
AccII	CGCG	1 cut(s)	414
AciI	CCGC	6 cut(s)	149, 157, 218, 227, 412, 414
AclWI	GGATC	2 cut(s)	34, 47
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	5 cut(s)	302, 442, 568, 917, 923
AfiI	CCNNNNNNNGG	3 cut(s)	703, 834, 856
AgeI	ACCGGT	1 cut(s)	676
AgsI	TTSAA	2 cut(s)	365, 930
AleI	CACNNNNGTG	1 cut(s)	480
AluBI	AGCT	5 cut(s)	23, 169, 604, 649, 709
AluI	AGCT	5 cut(s)	23, 169, 604, 649, 709
Alw26I	GTCTC	2 cut(s)	781, 900
AlwI	GGATC	2 cut(s)	34, 47
AoxI	GGCC	2 cut(s)	228, 747
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	5 cut(s)	302, 442, 568, 917, 923
AsiGI	ACCGGT	1 cut(s)	676
AsuHPI	GGTGA	2 cut(s)	164, 826
AxyI	CCTNAGG	1 cut(s)	792
BamHI	GGATCC	1 cut(s)	39
BanII	GRGCYC	3 cut(s)	18, 411, 496
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	3 cut(s)	115, 398, 739
BciVI	GTATCC	1 cut(s)	913
BcoDI	GTCTC	2 cut(s)	781, 900
BfaI	CTAG	2 cut(s)	20, 596
BfuI	GTATCC	1 cut(s)	913
BglI	GCCNNNNNGGC	1 cut(s)	219
BisI	GCNGC	3 cut(s)	119, 228, 415
BlsI	GCNGC	3 cut(s)	120, 229, 416
BmiI	GGNNCC	3 cut(s)	41, 410, 493
BmsI	GCATC	2 cut(s)	387, 438
BplI	GAGNNNNNCTC	2 cut(s)	509, 541
BsaI	GGTCTC	1 cut(s)	781
BsaJI	CCNNGG	1 cut(s)	412
BsaWI	WCCGGW	1 cut(s)	676
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	3 cut(s)	703, 834, 856
Bse118I	RCCGGY	2 cut(s)	421, 676
Bse1I	ACTGG	1 cut(s)	474
Bse21I	CCTNAGG	1 cut(s)	792
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	4 cut(s)	265, 277, 688, 750
BseLI	CCNNNNNNNGG	3 cut(s)	703, 834, 856
BseMII	CTCAG	5 cut(s)	615, 619, 776, 783, 911
BseNI	ACTGG	1 cut(s)	474
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	105
BsgI	GTGCAG	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	414
Bsh1285I	CGRYCG	1 cut(s)	434
BshFI	GGCC	2 cut(s)	230, 749
BshTI	ACCGGT	1 cut(s)	676
BsiEI	CGRYCG	1 cut(s)	434
BsiSI	CCGG	3 cut(s)	387, 422, 677
BslFI	GGGAC	2 cut(s)	279, 811
BslI	CCNNNNNNNGG	3 cut(s)	703, 834, 856
BsmAI	GTCTC	2 cut(s)	781, 900
BsmFI	GGGAC	2 cut(s)	279, 811
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	2 cut(s)	230, 749
Bso31I	GGTCTC	1 cut(s)	781
Bsp1286I	GDGCHC	3 cut(s)	18, 411, 496
Bsp143I	GATC	1 cut(s)	39
BspACI	CCGC	6 cut(s)	149, 157, 218, 227, 412, 414
BspANI	GGCC	2 cut(s)	230, 749
BspCNI	CTCAG	5 cut(s)	616, 618, 777, 784, 910
BspFNI	CGCG	1 cut(s)	414
BspHI	TCATGA	1 cut(s)	913
BspLI	GGNNCC	3 cut(s)	41, 410, 493
BspPI	GGATC	2 cut(s)	34, 47
BspQI	GCTCTTC	1 cut(s)	839
BspTNI	GGTCTC	1 cut(s)	781
BsrFI	RCCGGY	2 cut(s)	421, 676
BsrI	ACTGG	1 cut(s)	474
BssAI	RCCGGY	2 cut(s)	421, 676
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	1 cut(s)	39
Bst4CI	ACNGT	3 cut(s)	11, 196, 394
Bst6I	CTCTTC	4 cut(s)	61, 360, 525, 839
BstC8I	GCNNGC	5 cut(s)	220, 419, 423, 453, 711
BstDEI	CTNAG	5 cut(s)	605, 624, 785, 792, 897
BstDSI	CCRYGG	1 cut(s)	412
BstF5I	GGATG	4 cut(s)	265, 277, 688, 750
BstFNI	CGCG	1 cut(s)	414
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	2 cut(s)	781, 900
BstMBI	GATC	1 cut(s)	39
BstMCI	CGRYCG	1 cut(s)	434
BstMWI	GCNNNNNNNGC	4 cut(s)	219, 224, 406, 601
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
Bsu36I	CCTNAGG	1 cut(s)	792
BsuI	GTATCC	1 cut(s)	913
BsuRI	GGCC	2 cut(s)	230, 749
BtgI	CCRYGG	1 cut(s)	412
BtsCI	GGATG	4 cut(s)	265, 277, 688, 750
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	5 cut(s)	220, 419, 423, 453, 711
CciI	TCATGA	1 cut(s)	913
Cfr10I	RCCGGY	2 cut(s)	421, 676
Cfr42I	CCGCGG	1 cut(s)	415
CspAI	ACCGGT	1 cut(s)	676
CviAII	CATG	3 cut(s)	497, 689, 914
DdeI	CTNAG	5 cut(s)	605, 624, 785, 792, 897
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
DraI	TTTAAA	1 cut(s)	922
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	4 cut(s)	61, 360, 525, 839
EarI	CTCTTC	4 cut(s)	61, 360, 525, 839
Eco24I	GRGCYC	3 cut(s)	18, 411, 496
Eco31I	GGTCTC	1 cut(s)	781
Eco81I	CCTNAGG	1 cut(s)	792
EcoRI	GAATTC	2 cut(s)	302, 568
EcoT38I	GRGCYC	3 cut(s)	18, 411, 496
FaeI	CATG	3 cut(s)	500, 692, 917
FaqI	GGGAC	2 cut(s)	279, 811
FatI	CATG	3 cut(s)	496, 688, 913
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	3 cut(s)	119, 228, 415
FokI	GGATG	4 cut(s)	272, 284, 695, 757
FriOI	GRGCYC	3 cut(s)	18, 411, 496
Fsp4HI	GCNGC	3 cut(s)	119, 228, 415
FspBI	CTAG	2 cut(s)	20, 596
GluI	GCNGC	3 cut(s)	119, 228, 415
HaeIII	GGCC	2 cut(s)	230, 749
HapII	CCGG	3 cut(s)	387, 422, 677
Hin1II	CATG	3 cut(s)	500, 692, 917
HindIII	AAGCTT	2 cut(s)	167, 647
HinfI	GANTC	3 cut(s)	506, 524, 824
HpaII	CCGG	3 cut(s)	387, 422, 677
HphI	GGTGA	2 cut(s)	164, 826
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188III	TCNNGA	4 cut(s)	163, 438, 914, 930
Hpy8I	GTNNAC	1 cut(s)	643
Hpy99I	CGWCG	2 cut(s)	464, 658
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	3 cut(s)	11, 196, 394
HpyCH4IV	ACGT	1 cut(s)	653
HpyCH4V	TGCA	4 cut(s)	142, 688, 713, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	219, 224, 406, 601
HpyF3I	CTNAG	5 cut(s)	605, 624, 785, 792, 897
HpySE526I	ACGT	1 cut(s)	653
Hsp92II	CATG	3 cut(s)	500, 692, 917
KroI	GCCGGC	1 cut(s)	421
KroNI	GCCGGC	1 cut(s)	423
KspI	CCGCGG	1 cut(s)	415
Kzo9I	GATC	1 cut(s)	39
LguI	GCTCTTC	1 cut(s)	839
LmnI	GCTCC	5 cut(s)	349, 414, 491, 517, 706
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	2 cut(s)	387, 438
MaeI	CTAG	2 cut(s)	20, 596
MaeII	ACGT	1 cut(s)	653
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	8 cut(s)	48, 57, 102, 104, 308, 377, 542, 856
MfeI	CAATTG	1 cut(s)	830
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	3 cut(s)	18, 411, 496
MluCI	AATT	8 cut(s)	302, 442, 512, 568, 830, 851, 917, 923
MlyI	GAGTC	2 cut(s)	518, 833
MmeI	TCCRAC	3 cut(s)	17, 599, 636
MroNI	GCCGGC	1 cut(s)	421
MseI	TTAA	2 cut(s)	767, 921
MslI	CAYNNNNRTG	2 cut(s)	395, 480
MspA1I	CMGCKG	1 cut(s)	414
MspI	CCGG	3 cut(s)	387, 422, 677
MunI	CAATTG	1 cut(s)	830
Mva1269I	GAATGC	1 cut(s)	634
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	4 cut(s)	219, 224, 406, 601
NaeI	GCCGGC	1 cut(s)	423
NdeII	GATC	1 cut(s)	39
NgoMIV	GCCGGC	1 cut(s)	421
NlaIII	CATG	3 cut(s)	500, 692, 917
NlaIV	GGNNCC	3 cut(s)	41, 410, 493
OliI	CACNNNNGTG	1 cut(s)	480
PagI	TCATGA	1 cut(s)	913
PciSI	GCTCTTC	1 cut(s)	839
PctI	GAATGC	1 cut(s)	634
PdiI	GCCGGC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	506
PflMI	CCANNNNNTGG	1 cut(s)	856
PinAI	ACCGGT	1 cut(s)	676
PkrI	GCNGC	3 cut(s)	120, 229, 416
PleI	GAGTC	2 cut(s)	518, 832
PpsI	GAGTC	2 cut(s)	518, 832
PspN4I	GGNNCC	3 cut(s)	41, 410, 493
PsuI	RGATCY	1 cut(s)	39
RseI	CAYNNNNRTG	2 cut(s)	395, 480
SacII	CCGCGG	1 cut(s)	415
SapI	GCTCTTC	1 cut(s)	839
SaqAI	TTAA	2 cut(s)	767, 921
SatI	GCNGC	3 cut(s)	119, 228, 415
Sau3AI	GATC	1 cut(s)	39
SchI	GAGTC	2 cut(s)	518, 833
SduI	GDGCHC	3 cut(s)	18, 411, 496
SfaNI	GCATC	2 cut(s)	387, 438
Sfr303I	CCGCGG	1 cut(s)	415
SgrBI	CCGCGG	1 cut(s)	415
SmiI	ATTTAAAT	1 cut(s)	922
SmiMI	CAYNNNNRTG	2 cut(s)	395, 480
Sse9I	AATT	8 cut(s)	302, 442, 512, 568, 830, 851, 917, 923
SsiI	CCGC	6 cut(s)	149, 157, 218, 227, 412, 414
SspMI	CTAG	2 cut(s)	20, 596
SwaI	ATTTAAAT	1 cut(s)	922
TaaI	ACNGT	3 cut(s)	11, 196, 394
TaiI	ACGT	1 cut(s)	656
TaqI	TCGA	3 cut(s)	162, 446, 736
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	8 cut(s)	302, 442, 512, 568, 830, 851, 917, 923
TauI	GCSGC	2 cut(s)	230, 417
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	2 cut(s)	767, 921
Tru9I	TTAA	2 cut(s)	767, 921
TscAI	CASTG	1 cut(s)	397
TseI	GCWGC	1 cut(s)	118
TspDTI	ATGAA	3 cut(s)	57, 315, 930
TspRI	CASTG	1 cut(s)	397
Van91I	CCANNNNNTGG	1 cut(s)	856
XapI	RAATTY	5 cut(s)	302, 442, 568, 917, 923
XspI	CTAG	2 cut(s)	20, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.