Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Forward (+)

18308006 .. 18309508

Gene Structure 1503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19720.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAGCCCAAATTGTTTGATGGGCCCAAAGCTTAAGCCCTATAAGGCAGGTCCTAAAACCTCCTTCTCTGCGTCGACCAACCTATTGGAAGAAGTAGGGTTTTATCGAGGTTTTAGAGGCCACAGAGGAAAGGTTTACGAAATGGGTGTGTCCAATAAAGAGTCCCGGTTGATTAATGAGGATTCGATGGAAGAGGATGATTTCGAAGAGGTTGGGTCTGGGTCAGAATCGGAGGAAGACTCTGAAGAGGAGGGGGATGTGAAGCTGGATGAGCCGTCGAAGAAGGCTGTATACAACAGAGACGGTATCATGGATAAACTTGGAGATATAAGCTGGCCGGAGAATGCAGGATGGGTGCACAAACTCGCTGTTGACATTGATCAAGAACAAAAGGTGGACGTGAATGATGACCTGACTCGTGAGCTTGCCTTCTACACACAGGCTTTAGAGGGAACGAGGAAGGCATTTGAGAAGCTTCAGTCAATGGGGCTTCCGTTTCTGAGGCCTGAGGACTACTATGCAGAGATGGTGAAGTCAGATTCCCATATGGAGAGAGTGAAGAGAAGGCTTTTGGTAGAGAAGAAGAAGATCGAGGAAGCGGATGAGAGAAGGAAAGCTAGGGAGTCCAAGAAACTATCCAAGGAGATTCAGGCTCAGAAGTTGAAAGAGAGAGCTAAGCAGAAAAAGGAGGACATAGAATCTGTGAAGAAGTGGAGGAAGCAGAGGCAGCAAAGTGGGTTTGCCGGGGGTGACAAAGGCAGCGAGTTGGATTTGGCCTTCGAGGATGGGAAACCATTCGAGAGGTCAAGTAAGAAGAGGCCATTTGTGGCTCCAGGAGATCGGTCCGGAGGGAAAGCAAGACAAGGTGGGAAGCCGGCTGGGAAGAAACCGAAGAAGAGAGAAATCAAGGATTCCAAGTTTGGATATGGAGGAAGGAAAGGTTCCAAGAAGCAAAATGTGGCTGAAACGACTAATGATTTGAGGGGATTCAACAAAGATAGTCTCACATCAGGAAATAGGAAAAGGAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

345

Amino Acids

39.1

Weight (kDa)

9.39

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	38
AccI	GTMKAC	2 cut(s)	74, 291
AccIII	TCCGGA	1 cut(s)	845
AciI	CCGC	1 cut(s)	599
AcoI	YGGCCR	1 cut(s)	335
AcuI	CTGAAG	2 cut(s)	264, 461
AflII	CTTAAG	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	664, 991
AjiI	CACGTC	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	832
AluBI	AGCT	7 cut(s)	31, 265, 333, 424, 475, 617, 674
AluI	AGCT	7 cut(s)	31, 265, 333, 424, 475, 617, 674
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	2 cut(s)	294, 1007
Alw44I	GTGCAC	1 cut(s)	356
Aor13HI	TCCGGA	1 cut(s)	845
AoxI	GGCC	6 cut(s)	22, 118, 335, 503, 774, 818
ApaI	GGGCCC	1 cut(s)	26
ApaLI	GTGCAC	1 cut(s)	356
ApeKI	GCWGC	2 cut(s)	727, 759
ArsI	GACNNNNNNTTYG	2 cut(s)	961, 993
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	794
AspS9I	GGNCC	4 cut(s)	22, 23, 50, 843
AsuC2I	CCSGG	2 cut(s)	166, 745
AsuHPI	GGTGA	2 cut(s)	541, 761
AsuII	TTCGAA	1 cut(s)	204
AvaII	GGWCC	2 cut(s)	50, 843
AxyI	CCTNAGG	1 cut(s)	507
BaeGI	GKGCMC	2 cut(s)	26, 360
BanII	GRGCYC	2 cut(s)	8, 26
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BauI	CACGAG	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	739, 771
BccI	CCATC	5 cut(s)	13, 181, 345, 520, 779
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	834
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	2 cut(s)	166, 745
BcoDI	GTCTC	2 cut(s)	294, 1007
BfaI	CTAG	1 cut(s)	618
BfrI	CTTAAG	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	38
BisI	GCNGC	2 cut(s)	728, 760
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	2 cut(s)	729, 761
Bme1390I	CCNGG	3 cut(s)	166, 745, 834
Bme18I	GGWCC	2 cut(s)	50, 843
BmgBI	CACGTC	1 cut(s)	400
BmgT120I	GGNCC	4 cut(s)	22, 23, 50, 843
BmiI	GGNNCC	3 cut(s)	24, 831, 943
BmrFI	CCNGG	3 cut(s)	166, 745, 834
BpiI	GAAGAC	1 cut(s)	243
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpmI	CTGGAG	1 cut(s)	816
Bpu1102I	GCTNAGC	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	204
BpuMI	CCSGG	2 cut(s)	166, 745
BsaJI	CCNNGG	2 cut(s)	639, 744
BsaWI	WCCGGW	1 cut(s)	845
Bse118I	RCCGGY	1 cut(s)	874
Bse21I	CCTNAGG	1 cut(s)	507
BseAI	TCCGGA	1 cut(s)	845
BseBI	CCWGG	1 cut(s)	834
BseDI	CCNNGG	2 cut(s)	639, 744
BseGI	GGATG	6 cut(s)	202, 262, 274, 356, 607, 790
BseMII	CTCAG	3 cut(s)	491, 498, 668
BseRI	GAGGAG	1 cut(s)	263
BseSI	GKGCMC	2 cut(s)	26, 360
BseXI	GCAGC	2 cut(s)	739, 771
BseYI	CCCAGC	1 cut(s)	878
BshFI	GGCC	6 cut(s)	24, 120, 337, 505, 776, 820
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	5 cut(s)	166, 338, 744, 846, 875
BslFI	GGGAC	1 cut(s)	148
BsmAI	GTCTC	2 cut(s)	294, 1007
BsmBI	CGTCTC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	6 cut(s)	24, 120, 337, 505, 776, 820
Bsp119I	TTCGAA	1 cut(s)	204
Bsp120I	GGGCCC	1 cut(s)	22
Bsp1286I	GDGCHC	3 cut(s)	8, 26, 360
Bsp13I	TCCGGA	1 cut(s)	845
Bsp143I	GATC	3 cut(s)	379, 588, 838
Bsp1720I	GCTNAGC	1 cut(s)	675
BspACI	CCGC	1 cut(s)	599
BspANI	GGCC	6 cut(s)	24, 120, 337, 505, 776, 820
BspCNI	CTCAG	3 cut(s)	492, 499, 667
BspEI	TCCGGA	1 cut(s)	845
BspLI	GGNNCC	3 cut(s)	24, 831, 943
BspMI	ACCTGC	1 cut(s)	38
BspT104I	TTCGAA	1 cut(s)	204
BspTI	CTTAAG	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	874
BssAI	RCCGGY	1 cut(s)	874
BssECI	CCNNGG	2 cut(s)	639, 744
BssMI	GATC	3 cut(s)	379, 588, 838
BssNAI	GTATAC	1 cut(s)	292
BssSI	CACGAG	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	639
Bst1107I	GTATAC	1 cut(s)	292
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	834
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	7 cut(s)	186, 201, 240, 554, 809, 890, 1022
BstAFI	CTTAAG	1 cut(s)	32
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	3 cut(s)	335, 426, 876
BstDEI	CTNAG	4 cut(s)	500, 507, 654, 675
BstF5I	GGATG	6 cut(s)	202, 262, 274, 356, 607, 790
BstKTI	GATC	3 cut(s)	382, 591, 841
BstMAI	GTCTC	2 cut(s)	294, 1007
BstMBI	GATC	3 cut(s)	379, 588, 838
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 727
BstNI	CCWGG	1 cut(s)	834
BstSCI	CCNGG	3 cut(s)	164, 743, 832
BstSLI	GKGCMC	2 cut(s)	26, 360
BstV1I	GCAGC	2 cut(s)	739, 771
BstV2I	GAAGAC	1 cut(s)	243
BstXI	CCANNNNNNTGG	1 cut(s)	85
BstZ17I	GTATAC	1 cut(s)	292
Bsu36I	CCTNAGG	1 cut(s)	507
BsuRI	GGCC	6 cut(s)	24, 120, 337, 505, 776, 820
BtrI	CACGTC	1 cut(s)	400
BtsCI	GGATG	6 cut(s)	202, 262, 274, 356, 607, 790
BveI	ACCTGC	1 cut(s)	38
Cac8I	GCNNGC	3 cut(s)	335, 426, 876
Cfr10I	RCCGGY	1 cut(s)	874
Cfr13I	GGNCC	4 cut(s)	22, 23, 50, 843
CpoI	CGGWCCG	1 cut(s)	843
CseI	GACGC	1 cut(s)	60
CspI	CGGWCCG	1 cut(s)	843
CviAII	CATG	1 cut(s)	310
DdeI	CTNAG	4 cut(s)	500, 507, 654, 675
DpnI	GATC	3 cut(s)	381, 590, 840
DpnII	GATC	3 cut(s)	379, 588, 838
EaeI	YGGCCR	1 cut(s)	335
Eam1104I	CTCTTC	7 cut(s)	186, 201, 240, 554, 809, 890, 1022
EarI	CTCTTC	7 cut(s)	186, 201, 240, 554, 809, 890, 1022
Eco130I	CCWWGG	1 cut(s)	639
Eco147I	AGGCCT	1 cut(s)	505
Eco24I	GRGCYC	2 cut(s)	8, 26
Eco47I	GGWCC	2 cut(s)	50, 843
Eco57I	CTGAAG	2 cut(s)	264, 461
Eco81I	CCTNAGG	1 cut(s)	507
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	832
EcoT14I	CCWWGG	1 cut(s)	639
EcoT38I	GRGCYC	2 cut(s)	8, 26
ErhI	CCWWGG	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	294
FaeI	CATG	1 cut(s)	313
FaiI	YATR	9 cut(s)	42, 292, 311, 329, 519, 546, 548, 695, 927
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	1 cut(s)	309
FauNDI	CATATG	1 cut(s)	546
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	2 cut(s)	74, 291
Fnu4HI	GCNGC	2 cut(s)	728, 760
FokI	GGATG	6 cut(s)	209, 269, 281, 363, 614, 797
FriOI	GRGCYC	2 cut(s)	8, 26
Fsp4HI	GCNGC	2 cut(s)	728, 760
FspBI	CTAG	1 cut(s)	618
GluI	GCNGC	2 cut(s)	728, 760
GsaI	CCCAGC	1 cut(s)	882
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	6 cut(s)	24, 120, 337, 505, 776, 820
HapII	CCGG	5 cut(s)	166, 338, 744, 846, 875
HgaI	GACGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	313
HincII	GTYRAC	2 cut(s)	75, 373
HindII	GTYRAC	2 cut(s)	75, 373
HindIII	AAGCTT	2 cut(s)	29, 473
HpaII	CCGG	5 cut(s)	166, 338, 744, 846, 875
HphI	GGTGA	2 cut(s)	541, 761
Hpy166II	GTNNAC	6 cut(s)	75, 136, 292, 358, 373, 397
Hpy188I	TCNGA	6 cut(s)	226, 232, 244, 501, 538, 657
Hpy188III	TCNNGA	5 cut(s)	383, 419, 799, 846, 1011
Hpy8I	GTNNAC	6 cut(s)	75, 136, 292, 358, 373, 397
Hpy99I	CGWCG	2 cut(s)	76, 280
HpyAV	CCTTC	8 cut(s)	73, 277, 439, 454, 558, 603, 787, 927
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	3 cut(s)	347, 358, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 727
HpyF3I	CTNAG	4 cut(s)	500, 507, 654, 675
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	1 cut(s)	313
Kpn2I	TCCGGA	1 cut(s)	845
KroI	GCCGGC	1 cut(s)	874
KroNI	GCCGGC	1 cut(s)	876
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	379, 588, 838
LmnI	GCTCC	1 cut(s)	835
Lsp1109I	GCAGC	2 cut(s)	739, 771
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	749
MalI	GATC	3 cut(s)	381, 590, 840
MboI	GATC	3 cut(s)	379, 588, 838
MhlI	GDGCHC	3 cut(s)	8, 26, 360
MluCI	AATT	1 cut(s)	10
MlyI	GAGTC	4 cut(s)	170, 233, 409, 632
MmeI	TCCRAC	1 cut(s)	747
MroI	TCCGGA	1 cut(s)	845
MroNI	GCCGGC	1 cut(s)	874
MroXI	GAANNNNTTC	1 cut(s)	794
MseI	TTAA	2 cut(s)	33, 174
MspCI	CTTAAG	1 cut(s)	32
MspI	CCGG	5 cut(s)	166, 338, 744, 846, 875
MspR9I	CCNGG	3 cut(s)	166, 745, 834
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	834
MwoI	GCNNNNNNNGC	2 cut(s)	271, 727
NaeI	GCCGGC	1 cut(s)	876
NciI	CCSGG	2 cut(s)	166, 745
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	3 cut(s)	379, 588, 838
NgoMIV	GCCGGC	1 cut(s)	874
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	3 cut(s)	24, 831, 943
NmuCI	GTSAC	1 cut(s)	749
NspV	TTCGAA	1 cut(s)	204
PceI	AGGCCT	1 cut(s)	505
PctI	GAATGC	1 cut(s)	349
PdiI	GCCGGC	1 cut(s)	876
PdmI	GAANNNNTTC	1 cut(s)	794
PfeI	GAWTC	7 cut(s)	182, 227, 539, 646, 698, 911, 987
PfoI	TCCNGGA	1 cut(s)	832
PkrI	GCNGC	2 cut(s)	729, 761
PleI	GAGTC	4 cut(s)	169, 233, 409, 631
PpsI	GAGTC	4 cut(s)	169, 233, 409, 631
PpuMI	RGGWCCY	1 cut(s)	50
PshBI	ATTAAT	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	832
PspFI	CCCAGC	1 cut(s)	878
PspGI	CCWGG	1 cut(s)	832
PspN4I	GGNNCC	3 cut(s)	24, 831, 943
PspOMI	GGGCCC	1 cut(s)	22
PspPI	GGNCC	4 cut(s)	22, 23, 50, 843
PspPPI	RGGWCCY	1 cut(s)	50
Rsr2I	CGGWCCG	1 cut(s)	843
RsrII	CGGWCCG	1 cut(s)	843
SalI	GTCGAC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	33, 174
SatI	GCNGC	2 cut(s)	728, 760
Sau3AI	GATC	3 cut(s)	379, 588, 838
Sau96I	GGNCC	4 cut(s)	22, 23, 50, 843
SchI	GAGTC	4 cut(s)	170, 233, 409, 632
ScrFI	CCNGG	3 cut(s)	166, 745, 834
SduI	GDGCHC	3 cut(s)	8, 26, 360
SfuI	TTCGAA	1 cut(s)	204
SinI	GGWCC	2 cut(s)	50, 843
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	1 cut(s)	10
SseBI	AGGCCT	1 cut(s)	505
SsiI	CCGC	1 cut(s)	599
SspMI	CTAG	1 cut(s)	618
StuI	AGGCCT	1 cut(s)	505
StyD4I	CCNGG	3 cut(s)	164, 743, 832
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	8 cut(s)	74, 106, 185, 204, 278, 591, 780, 798
TaqII	GACCGA	1 cut(s)	831
TasI	AATT	1 cut(s)	10
TfiI	GAWTC	7 cut(s)	182, 227, 539, 646, 698, 911, 987
Tru1I	TTAA	2 cut(s)	33, 174
Tru9I	TTAA	2 cut(s)	33, 174
TseFI	GTSAC	1 cut(s)	749
TseI	GCWGC	2 cut(s)	727, 759
Tsp45I	GTSAC	1 cut(s)	749
TspGWI	ACGGA	1 cut(s)	483
Vha464I	CTTAAG	1 cut(s)	32
VneI	GTGCAC	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	50, 843
VspI	ATTAAT	1 cut(s)	174
XmiI	GTMKAC	2 cut(s)	74, 291
XmnI	GAANNNNTTC	1 cut(s)	794
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.