Rmu_sc0000665.1_g000018

Small subunit processome component 20 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000665.1
OG0001453
Physical Location & Seq
Forward (+)
85240 .. 86271
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000665.1_g000018.1.cds

Sequence Viewer

Length: 1032 bp
atgcaagtgacttctgaaatggtgctagagaaaatatgggagaaatggaaatcaaaagttcatgctgaaattccaagtgaaaggaatgcagaggagctggattccactgttaggcaagggctcgaacttgacagtgagatggtgatatatcctgctaacgcacaatctgaagcaaagggagtgcaactgttcattctctgcttacaaaattgtcattgtgagataaaggaggctaaactcttttgcaaggaagcattcgacagacttggtgaactgacccaaaccttagtatctcaggtattcactaccatcattttcgatcctcaatatttacaagcagcttttgatggggtattgtgtgatgtgattaagctctgtaatcatagttcctggaactataaagttggagaagaaaattgggctcttgatgataagattgagatcatgaacgggaatgctttactctgcatgtatgctaagtgcagagtcattagtgatgcaatgcaggttttcaatgacatggttgggcctaatgagattacttttatggctatgatgggtgagttaaagaagacgaacaaagtcgtggagactttggaaatgtttaagctgatgtggaggaaaagggtgcgtattgattctgtttcgttgtttgttgatattgaacgggatcccttgtttgttgctctttcacttatgaagacaattgttaaacgcaagctagttctggagaaatatgatcttgttactagagttgcagaaatgatgataacaagttatgtagaaccaattcgccacatttgtagtcagattttgtctcatttcttagcaagtcagatatatgaacttgagtacagtctatcttggtatttgggtgagaagcagcaattgtggggtgcagcagcacaggtttcagggttagtggttgaagccgaagtcgaagtcatgaagaaacgattccacaagcatatcaatagtgtattacaagtgaataaaagcttcttgttgtctgccattgatgaagatttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DRIM

Protein Analysis

343

Amino Acids

39.5

Weight (kDa)

5.35

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 496
AclWI GGATC 3 cut(s) 314, 665, 678
AcsI RAATTY 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 1 cut(s) 854
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 3 cut(s) 514, 665, 929
AjnI CCWGG 1 cut(s) 389
AluBI AGCT 6 cut(s) 97, 341, 373, 610, 721, 999
AluI AGCT 6 cut(s) 97, 341, 373, 610, 721, 999
Alw26I GTCTC 2 cut(s) 584, 822
AlwI GGATC 3 cut(s) 314, 665, 678
AoxI GGCC 1 cut(s) 527
ApeKI GCWGC 4 cut(s) 338, 883, 899, 902
ApoI RAATTY 1 cut(s) 69
ArsI GACNNNNNNTTYG 2 cut(s) 927, 959
Asp700I GAANNNNTTC 2 cut(s) 789, 956
AspS9I GGNCC 1 cut(s) 527
AsuHPI GGTGA 4 cut(s) 154, 281, 572, 887
BaeI ACNNNNGTAYC 2 cut(s) 273, 306
BamHI GGATCC 1 cut(s) 670
BanII GRGCYC 2 cut(s) 123, 424
BbsI GAAGAC 2 cut(s) 578, 707
BbvI GCAGC 4 cut(s) 350, 895, 911, 914
BccI CCATC 4 cut(s) 133, 317, 341, 550
BciT130I CCWGG 1 cut(s) 391
BcoDI GTCTC 2 cut(s) 584, 822
BfaI CTAG 3 cut(s) 26, 722, 750
BfuAI ACCTGC 1 cut(s) 496
BisI GCNGC 4 cut(s) 339, 884, 900, 903
BlsI GCNGC 4 cut(s) 340, 885, 901, 904
Bme1390I CCNGG 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 527
BmiI GGNNCC 1 cut(s) 672
BmrFI CCNGG 1 cut(s) 391
BmsI GCATC 1 cut(s) 487
BpiI GAAGAC 2 cut(s) 578, 707
BpmI CTGGAG 1 cut(s) 749
BpuEI CTTGAG 1 cut(s) 869
BsaBI GATNNNNATC 1 cut(s) 440
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 507
Bse8I GATNNNNATC 1 cut(s) 440
BseBI CCWGG 1 cut(s) 391
BseJI GATNNNNATC 1 cut(s) 440
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 1 cut(s) 308
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 4 cut(s) 350, 895, 911, 914
BsgI GTGCAG 2 cut(s) 502, 918
BshFI GGCC 1 cut(s) 529
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 584, 822
BsmI GAATGC 3 cut(s) 91, 254, 460
BsnI GGCC 1 cut(s) 529
Bsp1286I GDGCHC 2 cut(s) 123, 424
Bsp143I GATC 4 cut(s) 319, 441, 670, 739
BspANI GGCC 1 cut(s) 529
BspCNI CTCAG 1 cut(s) 307
BspHI TCATGA 2 cut(s) 444, 945
BspLI GGNNCC 1 cut(s) 672
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 3 cut(s) 314, 665, 678
BsrDI GCAATG 1 cut(s) 507
BssMI GATC 4 cut(s) 319, 441, 670, 739
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 4 cut(s) 109, 134, 189, 857
BstC8I GCNNGC 1 cut(s) 719
BstDEI CTNAG 4 cut(s) 286, 294, 477, 826
BstKTI GATC 4 cut(s) 322, 444, 673, 742
BstMAI GTCTC 2 cut(s) 584, 822
BstMBI GATC 4 cut(s) 319, 441, 670, 739
BstNI CCWGG 1 cut(s) 391
BstNSI RCATGY 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 389
BstV1I GCAGC 4 cut(s) 350, 895, 911, 914
BstV2I GAAGAC 2 cut(s) 578, 707
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
BsuRI GGCC 1 cut(s) 529
BtsIMutI CAGTG 2 cut(s) 105, 139
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 1 cut(s) 719
CciI TCATGA 2 cut(s) 444, 945
Cfr13I GGNCC 1 cut(s) 527
Csp6I GTAC 1 cut(s) 853
CviAII CATG 5 cut(s) 62, 445, 469, 520, 946
CviQI GTAC 1 cut(s) 853
DdeI CTNAG 4 cut(s) 286, 294, 477, 826
DpnI GATC 4 cut(s) 321, 443, 672, 741
DpnII GATC 4 cut(s) 319, 441, 670, 739
Eco24I GRGCYC 2 cut(s) 123, 424
Eco57I CTGAAG 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 389
EcoT38I GRGCYC 2 cut(s) 123, 424
FaeI CATG 5 cut(s) 65, 448, 472, 523, 949
FatI CATG 5 cut(s) 61, 444, 468, 519, 945
Fnu4HI GCNGC 4 cut(s) 339, 884, 900, 903
FriOI GRGCYC 2 cut(s) 123, 424
Fsp4HI GCNGC 4 cut(s) 339, 884, 900, 903
FspBI CTAG 3 cut(s) 26, 722, 750
GluI GCNGC 4 cut(s) 339, 884, 900, 903
GsuI CTGGAG 1 cut(s) 749
HaeIII GGCC 1 cut(s) 529
Hin1II CATG 5 cut(s) 65, 448, 472, 523, 949
HindIII AAGCTT 1 cut(s) 997
HinfI GANTC 4 cut(s) 101, 486, 638, 957
HphI GGTGA 4 cut(s) 154, 281, 572, 887
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 4 cut(s) 16, 169, 810, 837
Hpy188III TCNNGA 4 cut(s) 425, 445, 728, 946
Hpy8I GTNNAC 1 cut(s) 272
HpyCH4III ACNGT 4 cut(s) 109, 134, 189, 857
HpyF3I CTNAG 4 cut(s) 286, 294, 477, 826
Hsp92II CATG 5 cut(s) 65, 448, 472, 523, 949
Kzo9I GATC 4 cut(s) 319, 441, 670, 739
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 9 cut(s) 83, 165, 281, 376, 403, 491, 713, 893, 900
Lsp1109I GCAGC 4 cut(s) 350, 895, 911, 914
LweI GCATC 1 cut(s) 487
MaeI CTAG 3 cut(s) 26, 722, 750
MaeIII GTNAC 2 cut(s) 7, 745
MalI GATC 4 cut(s) 321, 443, 672, 741
MboI GATC 4 cut(s) 319, 441, 670, 739
MboII GAAGA 4 cut(s) 422, 583, 712, 961
MfeI CAATTG 2 cut(s) 705, 887
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 2 cut(s) 123, 424
MluCI AATT 6 cut(s) 69, 208, 415, 705, 789, 887
MlyI GAGTC 1 cut(s) 495
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 4 cut(s) 85, 223, 333, 612
MroXI GAANNNNTTC 2 cut(s) 789, 956
MseI TTAA 4 cut(s) 369, 566, 606, 711
MspR9I CCNGG 1 cut(s) 391
MunI CAATTG 2 cut(s) 705, 887
Mva1269I GAATGC 3 cut(s) 91, 254, 460
MvaI CCWGG 1 cut(s) 391
NdeII GATC 4 cut(s) 319, 441, 670, 739
NlaIII CATG 5 cut(s) 65, 448, 472, 523, 949
NlaIV GGNNCC 1 cut(s) 672
NmuCI GTSAC 1 cut(s) 7
NspI RCATGY 1 cut(s) 472
PagI TCATGA 2 cut(s) 444, 945
PctI GAATGC 3 cut(s) 91, 254, 460
PdmI GAANNNNTTC 2 cut(s) 789, 956
PfeI GAWTC 3 cut(s) 101, 638, 957
PfoI TCCNGGA 1 cut(s) 389
PkrI GCNGC 4 cut(s) 340, 885, 901, 904
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
Psp6I CCWGG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 672
PspPI GGNCC 1 cut(s) 527
PsrI GAACNNNNNNTAC 2 cut(s) 370, 402
PsuI RGATCY 1 cut(s) 670
RsaI GTAC 1 cut(s) 854
RsaNI GTAC 1 cut(s) 853
SaqAI TTAA 4 cut(s) 369, 566, 606, 711
SatI GCNGC 4 cut(s) 339, 884, 900, 903
Sau3AI GATC 4 cut(s) 319, 441, 670, 739
Sau96I GGNCC 1 cut(s) 527
SchI GAGTC 1 cut(s) 495
ScrFI CCNGG 1 cut(s) 391
SduI GDGCHC 2 cut(s) 123, 424
SfaNI GCATC 1 cut(s) 487
SmlI CTYRAG 1 cut(s) 848
SmoI CTYRAG 1 cut(s) 848
Sse9I AATT 6 cut(s) 69, 208, 415, 705, 789, 887
SspI AATATT 1 cut(s) 329
SspMI CTAG 3 cut(s) 26, 722, 750
StyD4I CCNGG 1 cut(s) 389
TaaI ACNGT 4 cut(s) 109, 134, 189, 857
TaqI TCGA 4 cut(s) 123, 258, 318, 939
TasI AATT 6 cut(s) 69, 208, 415, 705, 789, 887
TatI WGTACW 1 cut(s) 852
TfiI GAWTC 3 cut(s) 101, 638, 957
Tru1I TTAA 4 cut(s) 369, 566, 606, 711
Tru9I TTAA 4 cut(s) 369, 566, 606, 711
TscAI CASTG 2 cut(s) 112, 139
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 4 cut(s) 338, 883, 899, 902
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 6 cut(s) 50, 181, 461, 713, 858, 962
TspRI CASTG 2 cut(s) 112, 139
XapI RAATTY 1 cut(s) 69
XceI RCATGY 1 cut(s) 472
XmnI GAANNNNTTC 2 cut(s) 789, 956
XspI CTAG 3 cut(s) 26, 722, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.