Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Forward (+)

20916136 .. 20918076

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28160.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTGTGTCTAAGAAAGAATCAATGATGGTTAACGAGGAGGAAATGGAAGACGACAGTGATATGGGAGATGATGTGTCTGATTCCGAATTGGAACAAGAATCGGAGGAGGAATCTGAAGAGGAAGGAGATGTGAGATTGGCTGAGCCATCCCAGAATGCGACATACAACAAAGATGGTCTGTTAGAAAAGCTTGCAGATATGAGCTGGCCTGAGAATGCTAAATGGATAGACAAGCTTACGTTGGATATTGATCAAGAGCAGCCTGTGGATGTGAATGATGACCTGACGAGGGAGCTTGCGTTTTATACACAGGCTCTGAATGGAACGAGGATGGCCTTTGAGAAGCTTCAGGGAATGGGGCTTCCGTTTCTGAGGCCTGAGGACTACTATGCGGAAATGGTGAAGTCGGATTCCCATATGGAGAAAGTGAAGAGTCGGCTTTTGGTGGAGAAGAAGAACATGGAGGAAGCTGAGGAGAGAAGGAAGGCCAGGGAGGCCAAGAAATTGTCTAAAGAGATTCAGAACCAGAAGTTGAAGGAGAGAGCTAAGCAGAAAAAGGAATCTATTGAGTCTGTGAAGAAGTGGAGGAAGCAGAGACAGCAAAGTGGGTTTGCTGGGGGGGATAAAGGAAGCGAGTTGGATTCGGTTTTTGAAGATGGGAAACCATTTGAGAAGTCAAGTAAAAAGAGGCCTGGTGTAGCTCCTGGAGATCGATCTGGAGGGAAGGCAAAATATGCCGGAAAGGGGAAGAAGCCAAAGAAGAGAGAAGTCAAGGATTCCAAGTTTGGATTTGGAGGGAGGAAAGGTTCCAGGAAGCAAAATGTCGCTGAAACCACCAACGATTTAAGAGGTTTCAATAAACAAGAGGGTTTCTCAAAAAATAAGAAAAGGAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ebp2

Protein Analysis

301

Amino Acids

34.25

Weight (kDa)

7.66

Isoelectric Point (pI)

61.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ebp2	PF05890	56 - 296	4.1e-66	Eukaryotic rRNA processing protein EBP2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	395
AcuI	CTGAAG	2 cut(s)	138, 335
AfiI	CCNNNNNNNGG	2 cut(s)	292, 747
AgsI	TTSAA	3 cut(s)	538, 656, 859
AjnI	CCWGG	4 cut(s)	491, 694, 706, 812
AloI	GAACNNNNNNTCC	2 cut(s)	793, 825
AluBI	AGCT	8 cut(s)	193, 207, 238, 298, 349, 473, 548, 704
AluI	AGCT	8 cut(s)	193, 207, 238, 298, 349, 473, 548, 704
Alw26I	GTCTC	1 cut(s)	592
AlwNI	CAGNNNCTG	1 cut(s)	319
AoxI	GGCC	6 cut(s)	209, 336, 377, 489, 498, 692
ApeKI	GCWGC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	415
AxyI	CCTNAGG	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	57
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	5 cut(s)	22, 157, 170, 328, 653
BciT130I	CCWGG	4 cut(s)	493, 696, 708, 814
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	592
BglI	GCCNNNNNGGC	1 cut(s)	497
BisI	GCNGC	1 cut(s)	263
BlpI	GCTNAGC	2 cut(s)	144, 549
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	4 cut(s)	493, 696, 708, 814
BmiI	GGNNCC	1 cut(s)	811
BmrFI	CCNGG	4 cut(s)	493, 696, 708, 814
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	860, 892
BpmI	CTGGAG	2 cut(s)	729, 741
Bpu10I	CCTNAGC	1 cut(s)	474
Bpu1102I	GCTNAGC	2 cut(s)	144, 549
Bsa29I	ATCGAT	1 cut(s)	715
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	492
BsaXI	ACNNNNNCTCC	6 cut(s)	60, 90, 287, 317, 793, 823
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 747
Bse21I	CCTNAGG	1 cut(s)	381
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	4 cut(s)	493, 696, 708, 814
BseCI	ATCGAT	1 cut(s)	715
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	3 cut(s)	149, 277, 339
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	292, 747
BseMII	CTCAG	5 cut(s)	135, 204, 365, 372, 465
BseRI	GAGGAG	3 cut(s)	53, 122, 491
BseXI	GCAGC	1 cut(s)	274
BseYI	CCCAGC	1 cut(s)	617
BshFI	GGCC	6 cut(s)	211, 338, 379, 491, 500, 694
BshVI	ATCGAT	1 cut(s)	715
BsiSI	CCGG	1 cut(s)	741
BslI	CCNNNNNNNGG	2 cut(s)	292, 747
BsmAI	GTCTC	1 cut(s)	592
BsmI	GAATGC	2 cut(s)	163, 223
BsnI	GGCC	6 cut(s)	211, 338, 379, 491, 500, 694
Bsp143I	GATC	3 cut(s)	253, 712, 716
Bsp1720I	GCTNAGC	2 cut(s)	144, 549
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	6 cut(s)	211, 338, 379, 491, 500, 694
BspCNI	CTCAG	5 cut(s)	136, 205, 366, 373, 466
BspDI	ATCGAT	1 cut(s)	715
BspLI	GGNNCC	1 cut(s)	811
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	3 cut(s)	253, 712, 716
Bst2UI	CCWGG	4 cut(s)	493, 696, 708, 814
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	3 cut(s)	114, 428, 758
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstC8I	GCNNGC	3 cut(s)	195, 209, 300
BstDEI	CTNAG	7 cut(s)	12, 144, 213, 374, 381, 474, 549
BstF5I	GGATG	3 cut(s)	149, 277, 339
BstKTI	GATC	3 cut(s)	256, 715, 719
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	3 cut(s)	253, 712, 716
BstMWI	GCNNNNNNNGC	3 cut(s)	497, 601, 737
BstNI	CCWGG	4 cut(s)	493, 696, 708, 814
BstSCI	CCNGG	4 cut(s)	491, 694, 706, 812
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	57
Bsu15I	ATCGAT	1 cut(s)	715
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	6 cut(s)	211, 338, 379, 491, 500, 694
BsuTUI	ATCGAT	1 cut(s)	715
BtsCI	GGATG	3 cut(s)	149, 277, 339
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	3 cut(s)	195, 209, 300
CaiI	CAGNNNCTG	1 cut(s)	319
ClaI	ATCGAT	1 cut(s)	715
CviAII	CATG	1 cut(s)	463
DdeI	CTNAG	7 cut(s)	12, 144, 213, 374, 381, 474, 549
DpnI	GATC	3 cut(s)	255, 714, 718
DpnII	GATC	3 cut(s)	253, 712, 716
Eam1104I	CTCTTC	3 cut(s)	114, 428, 758
EarI	CTCTTC	3 cut(s)	114, 428, 758
Eco147I	AGGCCT	2 cut(s)	379, 694
Eco57I	CTGAAG	2 cut(s)	138, 335
Eco81I	CCTNAGG	1 cut(s)	381
EcoRII	CCWGG	4 cut(s)	491, 694, 706, 812
FaeI	CATG	1 cut(s)	466
FaiI	YATR	9 cut(s)	65, 166, 203, 309, 393, 420, 422, 464, 738
FatI	CATG	1 cut(s)	462
FauNDI	CATATG	1 cut(s)	420
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	3 cut(s)	136, 284, 346
Fsp4HI	GCNGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	263
GsaI	CCCAGC	1 cut(s)	621
GsuI	CTGGAG	2 cut(s)	729, 741
HaeIII	GGCC	6 cut(s)	211, 338, 379, 491, 500, 694
HapII	CCGG	1 cut(s)	741
Hin1II	CATG	1 cut(s)	466
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	3 cut(s)	191, 236, 347
HpaI	GTTAAC	1 cut(s)	34
HpaII	CCGG	1 cut(s)	741
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	8 cut(s)	82, 88, 106, 118, 321, 375, 412, 525
Hpy188III	TCNNGA	2 cut(s)	257, 720
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	5 cut(s)	119, 477, 481, 532, 721
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	3 cut(s)	497, 601, 737
HpyF3I	CTNAG	7 cut(s)	12, 144, 213, 374, 381, 474, 549
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	466
Ksp22I	TGATCA	1 cut(s)	253
KspAI	GTTAAC	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	253, 712, 716
LmnI	GCTCC	2 cut(s)	295, 709
Lsp1109I	GCAGC	1 cut(s)	274
MaeII	ACGT	1 cut(s)	242
MalI	GATC	3 cut(s)	255, 714, 718
MboI	GATC	3 cut(s)	253, 712, 716
MboII	GAAGA	9 cut(s)	62, 131, 445, 466, 469, 592, 668, 763, 775
MluCI	AATT	2 cut(s)	89, 506
MlyI	GAGTC	2 cut(s)	445, 581
MmeI	TCCRAC	3 cut(s)	225, 390, 621
MseI	TTAA	2 cut(s)	33, 848
MspI	CCGG	1 cut(s)	741
MspR9I	CCNGG	4 cut(s)	493, 696, 708, 814
Mva1269I	GAATGC	2 cut(s)	163, 223
MvaI	CCWGG	4 cut(s)	493, 696, 708, 814
MwoI	GCNNNNNNNGC	3 cut(s)	497, 601, 737
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	3 cut(s)	253, 712, 716
NlaIII	CATG	1 cut(s)	466
NlaIV	GGNNCC	1 cut(s)	811
PceI	AGGCCT	2 cut(s)	379, 694
PctI	GAATGC	2 cut(s)	163, 223
PfeI	GAWTC	9 cut(s)	20, 83, 101, 113, 413, 520, 563, 644, 779
PfoI	TCCNGGA	2 cut(s)	706, 812
PkrI	GCNGC	1 cut(s)	264
PleI	GAGTC	2 cut(s)	444, 580
PpsI	GAGTC	2 cut(s)	444, 580
Psp6I	CCWGG	4 cut(s)	491, 694, 706, 812
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	4 cut(s)	491, 694, 706, 812
PspN4I	GGNNCC	1 cut(s)	811
PstNI	CAGNNNCTG	1 cut(s)	319
SaqAI	TTAA	2 cut(s)	33, 848
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	3 cut(s)	253, 712, 716
SchI	GAGTC	2 cut(s)	445, 581
ScrFI	CCNGG	4 cut(s)	493, 696, 708, 814
SfiI	GGCCNNNNNGGCC	1 cut(s)	497
Sse9I	AATT	2 cut(s)	89, 506
SseBI	AGGCCT	2 cut(s)	379, 694
SsiI	CCGC	1 cut(s)	395
StuI	AGGCCT	2 cut(s)	379, 694
StyD4I	CCNGG	4 cut(s)	491, 694, 706, 812
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	1 cut(s)	715
TasI	AATT	2 cut(s)	89, 506
TfiI	GAWTC	9 cut(s)	20, 83, 101, 113, 413, 520, 563, 644, 779
Tru1I	TTAA	2 cut(s)	33, 848
Tru9I	TTAA	2 cut(s)	33, 848
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.