Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Reverse (-)

2332022 .. 2339466

Gene Structure 7445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00388940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGCTCCAGATTAGAAATTCTATTGAGCACCGCTACACCTTCGCCACACAATTACCCGTGTTCTCGAAACCAAAGTTACTCAAGTCCTGGGCTTCTCACCACCACACCCCAATCACCTCTAACCCCAGTTCACCCTCATCCAAATCTAAAGCAGGTTGAACCTGCCCTTCAGCTTCGCCCAATTTCAATGGAACTTGACCAGGTCCATAAAGATCAATTGGAGGCAAGGATTTCGAAGACGCAGGACTCTTTTGAAGCCATCCGCGCCCAACAATCAACAATCCAGGCTGAGATTTTAGCAGAGCTACGTCAGCTGCGTTTGGATTCCAAAACCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.68

Weight (kDa)

6.9

Isoelectric Point (pI)

80.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	145, 172
AccII	CGCG	1 cut(s)	267
AciI	CCGC	2 cut(s)	33, 265
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	161, 189, 257
AjnI	CCWGG	3 cut(s)	88, 201, 285
AluBI	AGCT	4 cut(s)	6, 175, 307, 316
AluI	AGCT	4 cut(s)	6, 175, 307, 316
Alw21I	GWGCWC	2 cut(s)	8, 32
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	3 cut(s)	91, 108, 125
AsuII	TTCGAA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	2 cut(s)	8, 32
BbvI	GCAGC	1 cut(s)	303
BccI	CCATC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BciT130I	CCWGG	3 cut(s)	90, 203, 287
BfuAI	ACCTGC	2 cut(s)	145, 172
BisI	GCNGC	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	318
Bme1390I	CCNGG	3 cut(s)	90, 203, 287
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmrFI	CCNGG	3 cut(s)	90, 203, 287
BmrI	ACTGGG	2 cut(s)	122, 331
BmuI	ACTGGG	2 cut(s)	122, 331
BpiI	GAAGAC	1 cut(s)	245
Bpu14I	TTCGAA	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	128, 337
BseBI	CCWGG	3 cut(s)	90, 203, 287
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	2 cut(s)	139, 261
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	128, 337
BseXI	GCAGC	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	267
BsiHKAI	GWGCWC	2 cut(s)	8, 32
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	8, 32
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	2 cut(s)	33, 265
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	267
BspMI	ACCTGC	2 cut(s)	145, 172
BspT104I	TTCGAA	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	128, 337
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	1 cut(s)	214
Bst2UI	CCWGG	3 cut(s)	90, 203, 287
BstBI	TTCGAA	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	2 cut(s)	139, 261
BstFNI	CGCG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 313
BstNI	CCWGG	3 cut(s)	90, 203, 287
BstSCI	CCNGG	3 cut(s)	88, 201, 285
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	303
BstV2I	GAAGAC	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	139, 261
BveI	ACCTGC	2 cut(s)	145, 172
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	1 cut(s)	250
CsiI	ACCWGGT	1 cut(s)	201
CviJI	RGCY	7 cut(s)	6, 94, 175, 260, 290, 307, 316
CviKI_1	RGCY	7 cut(s)	6, 94, 175, 260, 290, 307, 316
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	3 cut(s)	88, 201, 285
EcoT38I	GRGCYC	1 cut(s)	8
FaiI	YATR	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	317
FokI	GGATG	2 cut(s)	126, 248
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	317
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	317
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	1 cut(s)	269
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	2 cut(s)	248, 326
HphI	GGTGA	3 cut(s)	91, 108, 125
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188III	TCNNGA	2 cut(s)	9, 66
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	51, 179
HpyCH4IV	ACGT	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 313
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	1 cut(s)	310
HspAI	GCGC	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	11
Lsp1109I	GCAGC	1 cut(s)	303
MabI	ACCWGGT	1 cut(s)	201
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	250
MfeI	CAATTG	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	8, 32
MluCI	AATT	4 cut(s)	18, 52, 183, 218
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	3 cut(s)	129, 147, 217
MspA1I	CMGCKG	1 cut(s)	316
MspR9I	CCNGG	3 cut(s)	90, 203, 287
MunI	CAATTG	1 cut(s)	218
MvaI	CCWGG	3 cut(s)	90, 203, 287
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	266, 313
NdeII	GATC	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	326
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	318
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	3 cut(s)	88, 201, 285
PspGI	CCWGG	3 cut(s)	88, 201, 285
PspPI	GGNCC	1 cut(s)	205
PsyI	GACNNNGTC	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	3 cut(s)	90, 203, 287
SduI	GDGCHC	2 cut(s)	8, 32
SexAI	ACCWGGT	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	236
SinI	GGWCC	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	4 cut(s)	18, 52, 183, 218
SsiI	CCGC	2 cut(s)	33, 265
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	88, 201, 285
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	67, 236
TasI	AATT	4 cut(s)	18, 52, 183, 218
TfiI	GAWTC	1 cut(s)	326
TseI	GCWGC	1 cut(s)	316
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.