Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010589.1

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Reverse (-)

125 .. 2374

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010589.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

atggttaatgattatggcttcttgaatggtaatattggtgaagaaaatttgtatgctggagacaaatgtgaaaaaatgcaagtgacttctgaaatggtgctagagaaaatatgggagaaatggaaatcaaaagttcatgctgaaattgcaagtgaagggaatgcaaaggagctggattccactgttaggcaagggctcgaacttgacagtgagatggtgttatatcctgctaacgcacaatctgaagcaaaaggagtgcaactgttcattctctgcttacaaaattgtcattgtgagataaaggaggctaaactcttttgcaaggaagcattcgacagacttggtgaactgacccaaaccttagtatctcagaactataaagttggagaagaaaattgggctcttgatgataagattgagataatgaatgggaatgctttactctacatgtatgctaagtgcaacgtcattagtgatgcaatgcaggttttcaatgacatggttgagagtaatgaggtcacttttatggctatgatgggtgagttaaagaagctggacaaagtcgtggagactttggaaatgtttaagctgatgtggaggaaaagggtgcgtattgattctgtttcgttgtttgttgatattgaaagggatcccttgtttgttgctctttcacttatgaagacaattgttaaacgcaagctagttctggagaaatatgatcttgttactagagttgcagaaatgatgataacaagttatgtagaaccaattcgtcacattttcgaagtcatgaagaaactattccacaagcatatcaatagtgtattacaagtgattaaaagcttcttgttgtctgctatcgattttgtcactcatgattctactcatgaaactgccatcattttctggaaaaaggatatttgggaagcaatttgtaagctacccctgcatcaacacatgtggttgcattgcatttcaagtcatcttgtagcctcccactctgcttttgtaaaagagtcttgctcaggagatcatgaaaatcctttgggcacttactaccttataaaacgtgataaagttttcatggtagttgtgtatctctactgccaactgaagacacaaatcaattatgatgtcgccaacaaattgactacacaaaaccttgtagtcattgtgtgtggtgtatattctttgatgggacaaacaaagtgtgcagattctttgtcaagtatgttgggtgtttgtgctaaaggatgttgcgagtttggtgttaataatcatagtgatgggattctgagtaatgtgaacgggcaaaaattacatggccttacagttaaacttggatttgaggaagatcttcacttaaacaactcattgtttgatatgtatgcaaagagtacgaacatgaagagtgctgagaaggtttttcctagtatacatgaagtttatgggaatcttaatttgcttgcaacaagtgttaagtccggtgatacaaatagtggtcatcaaatgttggatatcatcttatgctcaaatgtgattccacggagtgccatactatctggctatttccaaaatgaagaccacatggaggtacaacaatttcataatatgcaagaattagacgtttgttggaactatttaatagcagtcaattatcaaaataaggaagctttcacctactttaagaagatgaggcaacatatgatgattcccatgcaattctcttatgctaatatacagagttgccatgcaaagctagtttcttcatttcaagtgaaacgtccatgtgttgctcagataacagaagatggatatgtcaatgtattggtttggtgtcataatcaattgttctcatattgcaagtcaaggatcacgaagtatctcagggaattggctcaagtctttgacattaagggtcaagtggagaatctggattatcaagtgaacttatcacaagagaaaatttacttgagttgcgtggttgactttcgatctactgctcttgacatcatcttttggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

674

Amino Acids

77.38

Weight (kDa)

6.1

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1064
Acc36I	ACCTGC	1 cut(s)	475
AccI	GTMKAC	1 cut(s)	1435
AclWI	GGATC	3 cut(s)	644, 657, 1880
AcsI	RAATTY	2 cut(s)	46, 1965
AcuI	CTGAAG	2 cut(s)	264, 1133
AdeI	CACNNNGTG	1 cut(s)	1550
AfaI	GTAC	2 cut(s)	1399, 1596
AfiI	CCNNNNNNNGG	2 cut(s)	186, 1591
AflIII	ACRYGT	2 cut(s)	447, 957
AgsI	TTSAA	5 cut(s)	25, 493, 644, 978, 1775
AluBI	AGCT	8 cut(s)	172, 553, 589, 700, 843, 940, 1673, 1759
AluI	AGCT	8 cut(s)	172, 553, 589, 700, 843, 940, 1673, 1759
Alw26I	GTCTC	2 cut(s)	54, 563
AlwI	GGATC	3 cut(s)	644, 657, 1880
AoxI	GGCC	1 cut(s)	1324
ApoI	RAATTY	2 cut(s)	46, 1965
Asp700I	GAANNNNTTC	3 cut(s)	768, 800, 1356
AsuHPI	GGTGA	5 cut(s)	50, 356, 551, 1499, 1669
AsuII	TTCGAA	1 cut(s)	783
BaeGI	GKGCMC	1 cut(s)	1052
BaeI	ACNNNNGTAYC	2 cut(s)	348, 381
BamHI	GGATCC	1 cut(s)	649
BanII	GRGCYC	2 cut(s)	198, 403
BbsI	GAAGAC	3 cut(s)	686, 1121, 1587
BccI	CCATC	6 cut(s)	208, 529, 905, 1189, 1280, 1805
BcoDI	GTCTC	2 cut(s)	54, 563
BfaI	CTAG	5 cut(s)	101, 701, 729, 1431, 1760
BfuAI	ACCTGC	1 cut(s)	475
BglII	AGATCT	1 cut(s)	1354
BmiI	GGNNCC	1 cut(s)	651
BmsI	GCATC	2 cut(s)	466, 958
BpiI	GAAGAC	3 cut(s)	686, 1121, 1587
BplI	GAGNNNNNCTC	2 cut(s)	1007, 1039
BpmI	CTGGAG	2 cut(s)	78, 728
Bpu10I	CCTNAGC	1 cut(s)	1024
Bpu14I	TTCGAA	1 cut(s)	783
BpuEI	CTTGAG	2 cut(s)	1884, 1993
Bsa29I	ATCGAT	1 cut(s)	861
BsaJI	CCNNGG	1 cut(s)	1544
BsaWI	WCCGGW	1 cut(s)	1484
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 1591
Bse3DI	GCAATG	2 cut(s)	486, 967
BseCI	ATCGAT	1 cut(s)	861
BseDI	CCNNGG	1 cut(s)	1544
BseGI	GGATG	1 cut(s)	1259
BseLI	CCNNNNNNNGG	2 cut(s)	186, 1591
BseMI	GCAATG	2 cut(s)	486, 967
BseMII	CTCAG	6 cut(s)	383, 1038, 1286, 1407, 1811, 1900
BseSI	GKGCMC	1 cut(s)	1052
BsgI	GTGCAG	1 cut(s)	1233
BshFI	GGCC	1 cut(s)	1326
BshVI	ATCGAT	1 cut(s)	861
BsiSI	CCGG	1 cut(s)	1485
BslFI	GGGAC	1 cut(s)	1212
BslI	CCNNNNNNNGG	2 cut(s)	186, 1591
BsmAI	GTCTC	2 cut(s)	54, 563
BsmFI	GGGAC	1 cut(s)	1212
BsmI	GAATGC	3 cut(s)	166, 329, 439
BsnI	GGCC	1 cut(s)	1326
Bsp119I	TTCGAA	1 cut(s)	783
Bsp1286I	GDGCHC	3 cut(s)	198, 403, 1052
Bsp143I	GATC	6 cut(s)	649, 718, 1030, 1354, 1872, 1994
BspANI	GGCC	1 cut(s)	1326
BspCNI	CTCAG	6 cut(s)	382, 1037, 1287, 1408, 1810, 1899
BspDI	ATCGAT	1 cut(s)	861
BspHI	TCATGA	4 cut(s)	789, 874, 886, 1033
BspLI	GGNNCC	1 cut(s)	651
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	3 cut(s)	644, 657, 1880
BspT104I	TTCGAA	1 cut(s)	783
BsrDI	GCAATG	2 cut(s)	486, 967
BssECI	CCNNGG	1 cut(s)	1544
BssMI	GATC	6 cut(s)	649, 718, 1030, 1354, 1872, 1994
BssNAI	GTATAC	1 cut(s)	1436
Bst1107I	GTATAC	1 cut(s)	1436
Bst4CI	ACNGT	4 cut(s)	184, 209, 264, 1333
Bst6I	CTCTTC	1 cut(s)	1403
BstBI	TTCGAA	1 cut(s)	783
BstC8I	GCNNGC	2 cut(s)	698, 1467
BstDEI	CTNAG	8 cut(s)	361, 369, 456, 1024, 1295, 1416, 1797, 1886
BstDSI	CCRYGG	1 cut(s)	1544
BstF5I	GGATG	1 cut(s)	1259
BstKTI	GATC	6 cut(s)	652, 721, 1033, 1357, 1875, 1997
BstMAI	GTCTC	2 cut(s)	54, 563
BstMBI	GATC	6 cut(s)	649, 718, 1030, 1354, 1872, 1994
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 946
BstNSI	RCATGY	2 cut(s)	451, 961
BstSLI	GKGCMC	1 cut(s)	1052
BstV2I	GAAGAC	3 cut(s)	686, 1121, 1587
BstX2I	RGATCY	2 cut(s)	649, 1354
BstYI	RGATCY	2 cut(s)	649, 1354
BstZ17I	GTATAC	1 cut(s)	1436
Bsu15I	ATCGAT	1 cut(s)	861
BsuRI	GGCC	1 cut(s)	1326
BsuTUI	ATCGAT	1 cut(s)	861
BtgI	CCRYGG	1 cut(s)	1544
BtsCI	GGATG	1 cut(s)	1259
BtsIMutI	CAGTG	2 cut(s)	180, 214
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	698, 1467
CciI	TCATGA	4 cut(s)	789, 874, 886, 1033
ClaI	ATCGAT	1 cut(s)	861
Csp6I	GTAC	2 cut(s)	1398, 1595
CspCI	CAANNNNNGTGG	2 cut(s)	941, 976
CviQI	GTAC	2 cut(s)	1398, 1595
DdeI	CTNAG	8 cut(s)	361, 369, 456, 1024, 1295, 1416, 1797, 1886
DpnI	GATC	6 cut(s)	651, 720, 1032, 1356, 1874, 1996
DpnII	GATC	6 cut(s)	649, 718, 1030, 1354, 1872, 1994
DraIII	CACNNNGTG	1 cut(s)	1550
Eam1104I	CTCTTC	1 cut(s)	1403
EarI	CTCTTC	1 cut(s)	1403
Eco24I	GRGCYC	2 cut(s)	198, 403
Eco32I	GATATC	1 cut(s)	1519
Eco57I	CTGAAG	2 cut(s)	264, 1133
EcoRV	GATATC	1 cut(s)	1519
EcoT38I	GRGCYC	2 cut(s)	198, 403
FaqI	GGGAC	1 cut(s)	1212
FauNDI	CATATG	1 cut(s)	1704
FblI	GTMKAC	1 cut(s)	1435
FokI	GGATG	1 cut(s)	1266
FriOI	GRGCYC	2 cut(s)	198, 403
FspBI	CTAG	5 cut(s)	101, 701, 729, 1431, 1760
GsuI	CTGGAG	2 cut(s)	78, 728
HaeIII	GGCC	1 cut(s)	1326
HapII	CCGG	1 cut(s)	1485
HincII	GTYRAC	1 cut(s)	1987
HindII	GTYRAC	1 cut(s)	1987
HindIII	AAGCTT	2 cut(s)	841, 1671
HpaII	CCGG	1 cut(s)	1485
HphI	GGTGA	5 cut(s)	50, 356, 551, 1499, 1669
Hpy166II	GTNNAC	5 cut(s)	347, 1306, 1436, 1948, 1987
Hpy188I	TCNGA	5 cut(s)	91, 244, 372, 1296, 1800
Hpy8I	GTNNAC	5 cut(s)	347, 1306, 1436, 1948, 1987
HpyAV	CCTTC	2 cut(s)	149, 1414
HpyCH4III	ACNGT	4 cut(s)	184, 209, 264, 1333
HpyCH4IV	ACGT	4 cut(s)	465, 1069, 1626, 1783
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 946
HpyF3I	CTNAG	8 cut(s)	361, 369, 456, 1024, 1295, 1416, 1797, 1886
HpySE526I	ACGT	4 cut(s)	465, 1069, 1626, 1783
Kzo9I	GATC	6 cut(s)	649, 718, 1030, 1354, 1872, 1994
LmnI	GCTCC	1 cut(s)	169
LweI	GCATC	2 cut(s)	466, 958
MaeI	CTAG	5 cut(s)	101, 701, 729, 1431, 1760
MaeII	ACGT	4 cut(s)	465, 1069, 1626, 1783
MaeIII	GTNAC	5 cut(s)	82, 517, 724, 773, 868
MalI	GATC	6 cut(s)	651, 720, 1032, 1356, 1874, 1996
MboI	GATC	6 cut(s)	649, 718, 1030, 1354, 1872, 1994
MfeI	CAATTG	2 cut(s)	684, 1847
MflI	RGATCY	2 cut(s)	649, 1354
MhlI	GDGCHC	3 cut(s)	198, 403, 1052
MlyI	GAGTC	1 cut(s)	1025
MmeI	TCCRAC	3 cut(s)	364, 1494, 1613
MnlI	CCTC	7 cut(s)	298, 508, 591, 1003, 1342, 1585, 1689
MroXI	GAANNNNTTC	3 cut(s)	768, 800, 1356
MslI	CAYNNNNRTG	2 cut(s)	524, 1284
MspI	CCGG	1 cut(s)	1485
MunI	CAATTG	2 cut(s)	684, 1847
Mva1269I	GAATGC	3 cut(s)	166, 329, 439
MwoI	GCNNNNNNNGC	2 cut(s)	146, 946
NdeI	CATATG	1 cut(s)	1704
NdeII	GATC	6 cut(s)	649, 718, 1030, 1354, 1872, 1994
NlaIV	GGNNCC	1 cut(s)	651
NmuCI	GTSAC	4 cut(s)	82, 517, 773, 868
NspI	RCATGY	2 cut(s)	451, 961
NspV	TTCGAA	1 cut(s)	783
PagI	TCATGA	4 cut(s)	789, 874, 886, 1033
PciI	ACATGT	2 cut(s)	447, 957
PctI	GAATGC	3 cut(s)	166, 329, 439
PdmI	GAANNNNTTC	3 cut(s)	768, 800, 1356
PfeI	GAWTC	9 cut(s)	176, 617, 878, 1217, 1291, 1453, 1540, 1711, 1930
PflFI	GACNNNGTC	1 cut(s)	560
PleI	GAGTC	1 cut(s)	1024
PpsI	GAGTC	1 cut(s)	1024
PscI	ACATGT	2 cut(s)	447, 957
PsiI	TTATAA	1 cut(s)	1064
PspN4I	GGNNCC	1 cut(s)	651
PsuI	RGATCY	2 cut(s)	649, 1354
PsyI	GACNNNGTC	1 cut(s)	560
RsaI	GTAC	2 cut(s)	1399, 1596
RsaNI	GTAC	2 cut(s)	1398, 1595
RseI	CAYNNNNRTG	2 cut(s)	524, 1284
Sau3AI	GATC	6 cut(s)	649, 718, 1030, 1354, 1872, 1994
SchI	GAGTC	1 cut(s)	1025
SduI	GDGCHC	3 cut(s)	198, 403, 1052
SfaNI	GCATC	2 cut(s)	466, 958
SfuI	TTCGAA	1 cut(s)	783
SmiMI	CAYNNNNRTG	2 cut(s)	524, 1284
SmlI	CTYRAG	2 cut(s)	1899, 1972
SmoI	CTYRAG	2 cut(s)	1899, 1972
SspI	AATATT	1 cut(s)	34
SspMI	CTAG	5 cut(s)	101, 701, 729, 1431, 1760
TaaI	ACNGT	4 cut(s)	184, 209, 264, 1333
TaiI	ACGT	4 cut(s)	468, 1072, 1629, 1786
TaqI	TCGA	5 cut(s)	198, 333, 783, 861, 1993
TfiI	GAWTC	9 cut(s)	176, 617, 878, 1217, 1291, 1453, 1540, 1711, 1930
TscAI	CASTG	2 cut(s)	187, 214
TseFI	GTSAC	4 cut(s)	82, 517, 773, 868
Tsp45I	GTSAC	4 cut(s)	82, 517, 773, 868
TspGWI	ACGGA	1 cut(s)	1561
TspRI	CASTG	2 cut(s)	187, 214
Tth111I	GACNNNGTC	1 cut(s)	560
XapI	RAATTY	2 cut(s)	46, 1965
XceI	RCATGY	2 cut(s)	451, 961
XmiI	GTMKAC	1 cut(s)	1435
XmnI	GAANNNNTTC	3 cut(s)	768, 800, 1356
XspI	CTAG	5 cut(s)	101, 701, 729, 1431, 1760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.