Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005278.1

Orthogroup ID

OG0001453

Physical Location & Seq

Genomic Coordinates Reverse (-)

98557 .. 99353

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005278.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgtcaattctgggcttagatcctggggatcctaacaactggtatcagagcccgcaactggacctgtttccagtgcgtccggcagggtacggcggtgggatctccggcgcttgttatctcacgcattcttcttaccctcatggtagccctagctacccaccggagtcggattttccaccacaccaaccaccaccaccacagcttcgacacctgccttcgaatcaactctatcacagcctagatgttccggtgcaaaaggaggtcctccgctccacggccactttctccgcccttatcgacaagctcaagaagcttcatctgcccctctacatcgcagtcacagaggaggtcaacctcgcgggcgaatctgctgcatctgaccactaccaggtgacgcaggatgtaacagttgagggtaatgatgaagtgatgagaaatgacaaagaagatgaattggcacaagtagatgaggaaaatagagaaagagaacataacttggagcgtagccaagttagagagatgagtgtccatgtttccggtaccatgatgcgcgatgggctcagcggcgtgccggctgttccgtcttcaggaaattcgatgctggctgacgacgaggaactggaagacgatagtgatatgggagcccatgtgtctgattccgaattggaacaagactcagaagagaaaggagatgtgagattgactgaaccctcccagaattctacatacaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

26.92

Weight (kDa)

4.42

Isoelectric Point (pI)

62.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22660
fragaria_vesca	FvH4_3g44241 FvH4_7g28160 FvH4_7g28160 FvH4_7g28160
malus_domestica	MD01G1185600.v1.1 MD07G1257700.v1.1
prunus_persica	Prupe.2G115300_v2.0.a1 Prupe.2G115400_v2.0.a1 Prupe.2G282000_v2.0.a1
pyrus_communis	pycom01g19720 pycom07g23070
rosa_chinensis	RchiOBHm_Chr1g0375101
rosa_laevigata	RLG00000000704 RLG00000019704 RLG00000019707 RLG00000026687 RLG00000029116
rosa_multiflora	Rmu_co8059840.1_g000001 Rmu_co8133218.1_g000001 Rmu_sc0000554.1_g000018 Rmu_sc0000665.1_g000018 Rmu_sc0001371.1_g000022 Rmu_sc0002268.1_g000036 Rmu_sc0003129.1_g000005 Rmu_sc0003710.1_g000012 Rmu_sc0005008.1_g000027 Rmu_sc0005278.1_g000015 Rmu_sc0005454.1_g000013 Rmu_sc0005454.1_g000014 Rmu_sc0006754.1_g000009 Rmu_sc0007581.1_g000002 Rmu_sc0008115.1_g000013 Rmu_sc0010589.1_g000001 Rmu_sc0013545.1_g000008 Rmu_sc0028055.1_g000001 Rmu_sc0032109.1_g000001 Rmu_ssc0000434.1_g000059
rosa_roxburghii	Rroxscaffold_3G00223090 Rroxscaffold_6G00388940 Rroxscaffold_7G00205890
rosa_rugosa	Rorug01G0388500 Rorug06G0420000
rosa_samantha	Rh1AG248100 Rh1AG398900 Rh1BG107200 Rh1BG365600 Rh1CG378500 Rh1DG396300 Rh4AG140200 Rh7BG018600
rosa_wichuraiana	Rw1G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	219
Acc36I	ACCTGC	1 cut(s)	219
Acc65I	GGTACC	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	539
AccBSI	CCGCTC	1 cut(s)	270
AccII	CGCG	2 cut(s)	359, 552
AciI	CCGC	6 cut(s)	53, 93, 268, 288, 359, 564
AclWI	GGATC	4 cut(s)	14, 23, 36, 107
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	2 cut(s)	592, 718
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	2 cut(s)	89, 541
AfiI	CCNNNNNNNGG	4 cut(s)	58, 274, 388, 587
AjnI	CCWGG	2 cut(s)	22, 387
AluBI	AGCT	4 cut(s)	153, 202, 304, 313
AluI	AGCT	4 cut(s)	153, 202, 304, 313
AlwI	GGATC	4 cut(s)	14, 23, 36, 107
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	2 cut(s)	592, 718
Asp718I	GGTACC	1 cut(s)	539
AspLEI	GCGC	2 cut(s)	110, 552
AspS9I	GGNCC	2 cut(s)	61, 262
AsuHPI	GGTGA	1 cut(s)	403
AsuII	TTCGAA	1 cut(s)	218
AvaII	GGWCC	2 cut(s)	61, 262
BaeI	ACNNNNGTAYC	2 cut(s)	79, 112
BamHI	GGATCC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	3 cut(s)	53, 561, 646
BbsI	GAAGAC	2 cut(s)	576, 630
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	2 cut(s)	106, 291
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	2 cut(s)	24, 389
BfaI	CTAG	2 cut(s)	150, 239
BfoI	RGCGCY	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	219
BisI	GCNGC	2 cut(s)	372, 565
BlpI	GCTNAGC	1 cut(s)	560
BlsI	GCNGC	2 cut(s)	373, 566
Bme1390I	CCNGG	2 cut(s)	24, 389
Bme18I	GGWCC	2 cut(s)	61, 262
BmgT120I	GGNCC	2 cut(s)	61, 262
BmiI	GGNNCC	3 cut(s)	30, 541, 643
BmrFI	CCNGG	2 cut(s)	24, 389
BmsI	GCATC	3 cut(s)	383, 537, 588
BpiI	GAAGAC	2 cut(s)	576, 630
Bpu1102I	GCTNAGC	1 cut(s)	560
Bpu14I	TTCGAA	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	23, 273
BsaWI	WCCGGW	3 cut(s)	160, 247, 536
BsaXI	ACNNNNNCTCC	2 cut(s)	633, 663
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 274, 388, 587
Bse118I	RCCGGY	1 cut(s)	571
Bse1I	ACTGG	4 cut(s)	44, 63, 71, 624
BseBI	CCWGG	2 cut(s)	24, 389
BseDI	CCNNGG	2 cut(s)	23, 273
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	4 cut(s)	58, 274, 388, 587
BseMII	CTCAG	2 cut(s)	574, 690
BseNI	ACTGG	4 cut(s)	44, 63, 71, 624
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	1 cut(s)	358
Bsh1236I	CGCG	2 cut(s)	359, 552
BshFI	GGCC	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	539
BsiSI	CCGG	6 cut(s)	80, 105, 161, 248, 537, 572
BslI	CCNNNNNNNGG	4 cut(s)	58, 274, 388, 587
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	278
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1286I	GDGCHC	3 cut(s)	53, 561, 646
Bsp143I	GATC	3 cut(s)	19, 28, 99
Bsp1720I	GCTNAGC	1 cut(s)	560
BspACI	CCGC	6 cut(s)	53, 93, 268, 288, 359, 564
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	2 cut(s)	573, 689
BspFNI	CGCG	2 cut(s)	359, 552
BspLI	GGNNCC	3 cut(s)	30, 541, 643
BspMI	ACCTGC	1 cut(s)	219
BspPI	GGATC	4 cut(s)	14, 23, 36, 107
BspT104I	TTCGAA	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	539
BsrBI	CCGCTC	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	571
BsrI	ACTGG	4 cut(s)	44, 63, 71, 624
BssAI	RCCGGY	1 cut(s)	571
BssECI	CCNNGG	2 cut(s)	23, 273
BssMI	GATC	3 cut(s)	19, 28, 99
Bst2UI	CCWGG	2 cut(s)	24, 389
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	675
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	5 cut(s)	53, 361, 569, 573, 603
BstDEI	CTNAG	3 cut(s)	16, 560, 676
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	406
BstFNI	CGCG	2 cut(s)	359, 552
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	110, 552
BstKTI	GATC	3 cut(s)	22, 31, 102
BstMBI	GATC	3 cut(s)	19, 28, 99
BstMWI	GCNNNNNNNGC	3 cut(s)	310, 319, 556
BstNI	CCWGG	2 cut(s)	24, 389
BstSCI	CCNGG	2 cut(s)	22, 387
BstUI	CGCG	2 cut(s)	359, 552
BstV1I	GCAGC	1 cut(s)	358
BstV2I	GAAGAC	2 cut(s)	576, 630
BstX2I	RGATCY	3 cut(s)	19, 28, 99
BstYI	RGATCY	3 cut(s)	19, 28, 99
BsuRI	GGCC	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	273
BtgZI	GCGATG	2 cut(s)	316, 567
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	78
BveI	ACCTGC	1 cut(s)	219
Cac8I	GCNNGC	5 cut(s)	53, 361, 569, 573, 603
CfoI	GCGC	2 cut(s)	110, 552
Cfr10I	RCCGGY	1 cut(s)	571
Cfr13I	GGNCC	2 cut(s)	61, 262
CseI	GACGC	2 cut(s)	65, 403
CsiI	ACCWGGT	1 cut(s)	387
Csp6I	GTAC	2 cut(s)	88, 540
CviAII	CATG	4 cut(s)	140, 530, 544, 647
CviQI	GTAC	2 cut(s)	88, 540
DdeI	CTNAG	3 cut(s)	16, 560, 676
DpnI	GATC	3 cut(s)	21, 30, 101
DpnII	GATC	3 cut(s)	19, 28, 99
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
EciI	GGCGGA	1 cut(s)	277
Eco24I	GRGCYC	3 cut(s)	53, 561, 646
Eco47I	GGWCC	2 cut(s)	61, 262
Eco57I	CTGAAG	1 cut(s)	570
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	718
EcoRII	CCWGG	2 cut(s)	22, 387
EcoT38I	GRGCYC	3 cut(s)	53, 561, 646
FaeI	CATG	4 cut(s)	143, 533, 547, 650
FaiI	YATR	7 cut(s)	141, 492, 531, 545, 638, 648, 727
FatI	CATG	4 cut(s)	139, 529, 543, 646
FauI	CCCGC	2 cut(s)	60, 352
Fnu4HI	GCNGC	2 cut(s)	372, 565
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	3 cut(s)	53, 561, 646
Fsp4HI	GCNGC	2 cut(s)	372, 565
FspBI	CTAG	2 cut(s)	150, 239
GlaI	GCGC	2 cut(s)	109, 551
GluI	GCNGC	2 cut(s)	372, 565
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	6 cut(s)	80, 105, 161, 248, 537, 572
HgaI	GACGC	2 cut(s)	65, 403
HhaI	GCGC	2 cut(s)	110, 552
Hin1II	CATG	4 cut(s)	143, 533, 547, 650
Hin6I	GCGC	2 cut(s)	108, 550
HinP1I	GCGC	2 cut(s)	108, 550
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	5 cut(s)	164, 220, 365, 656, 674
HpaII	CCGG	6 cut(s)	80, 105, 161, 248, 537, 572
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	6 cut(s)	48, 169, 379, 655, 661, 679
Hpy188III	TCNNGA	2 cut(s)	307, 588
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	1 cut(s)	614
HpyAV	CCTTC	1 cut(s)	225
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	2 cut(s)	253, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	310, 319, 556
HpyF3I	CTNAG	3 cut(s)	16, 560, 676
Hsp92II	CATG	4 cut(s)	143, 533, 547, 650
HspAI	GCGC	2 cut(s)	108, 550
KpnI	GGTACC	1 cut(s)	543
KroI	GCCGGC	1 cut(s)	571
KroNI	GCCGGC	1 cut(s)	573
Kzo9I	GATC	3 cut(s)	19, 28, 99
LmnI	GCTCC	3 cut(s)	275, 499, 641
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	3 cut(s)	383, 537, 588
MabI	ACCWGGT	1 cut(s)	387
MaeI	CTAG	2 cut(s)	150, 239
MaeIII	GTNAC	3 cut(s)	337, 391, 403
MalI	GATC	3 cut(s)	21, 30, 101
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	3 cut(s)	19, 28, 99
MboII	GAAGA	5 cut(s)	120, 458, 576, 635, 692
MflI	RGATCY	3 cut(s)	19, 28, 99
MhlI	GDGCHC	3 cut(s)	53, 561, 646
MluCI	AATT	5 cut(s)	6, 452, 592, 662, 718
MlyI	GAGTC	2 cut(s)	173, 668
MmeI	TCCRAC	1 cut(s)	147
MroNI	GCCGGC	1 cut(s)	571
MspA1I	CMGCKG	1 cut(s)	564
MspI	CCGG	6 cut(s)	80, 105, 161, 248, 537, 572
MspR9I	CCNGG	2 cut(s)	24, 389
Mva1269I	GAATGC	1 cut(s)	124
MvaI	CCWGG	2 cut(s)	24, 389
MvnI	CGCG	2 cut(s)	359, 552
MwoI	GCNNNNNNNGC	3 cut(s)	310, 319, 556
NaeI	GCCGGC	1 cut(s)	573
NdeII	GATC	3 cut(s)	19, 28, 99
NgoMIV	GCCGGC	1 cut(s)	571
NlaIII	CATG	4 cut(s)	143, 533, 547, 650
NlaIV	GGNNCC	3 cut(s)	30, 541, 643
NmuCI	GTSAC	2 cut(s)	337, 391
NspV	TTCGAA	1 cut(s)	218
PaqCI	CACCTGC	1 cut(s)	219
PctI	GAATGC	1 cut(s)	124
PdiI	GCCGGC	1 cut(s)	573
PfeI	GAWTC	3 cut(s)	220, 365, 656
PkrI	GCNGC	2 cut(s)	373, 566
PleI	GAGTC	2 cut(s)	172, 668
PpsI	GAGTC	2 cut(s)	172, 668
PpuMI	RGGWCCY	1 cut(s)	262
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	2 cut(s)	22, 387
PspGI	CCWGG	2 cut(s)	22, 387
PspN4I	GGNNCC	3 cut(s)	30, 541, 643
PspPI	GGNCC	2 cut(s)	61, 262
PspPPI	RGGWCCY	1 cut(s)	262
PsuI	RGATCY	3 cut(s)	19, 28, 99
RsaI	GTAC	2 cut(s)	89, 541
RsaNI	GTAC	2 cut(s)	88, 540
SatI	GCNGC	2 cut(s)	372, 565
Sau3AI	GATC	3 cut(s)	19, 28, 99
Sau96I	GGNCC	2 cut(s)	61, 262
SchI	GAGTC	2 cut(s)	173, 668
ScrFI	CCNGG	2 cut(s)	24, 389
SduI	GDGCHC	3 cut(s)	53, 561, 646
SexAI	ACCWGGT	1 cut(s)	387
SfaNI	GCATC	3 cut(s)	383, 537, 588
SfuI	TTCGAA	1 cut(s)	218
SinI	GGWCC	2 cut(s)	61, 262
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	5 cut(s)	6, 452, 592, 662, 718
SsiI	CCGC	6 cut(s)	53, 93, 268, 288, 359, 564
SspMI	CTAG	2 cut(s)	150, 239
StyD4I	CCNGG	2 cut(s)	22, 387
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	4 cut(s)	205, 218, 297, 596
TasI	AATT	5 cut(s)	6, 452, 592, 662, 718
TauI	GCSGC	1 cut(s)	567
TfiI	GAWTC	3 cut(s)	220, 365, 656
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	2 cut(s)	337, 391
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	2 cut(s)	337, 391
TspDTI	ATGAA	3 cut(s)	305, 438, 465
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	2 cut(s)	61, 262
XapI	RAATTY	2 cut(s)	592, 718
XspI	CTAG	2 cut(s)	150, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.