AT4G35785

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001558
Physical Location & Seq
Reverse (-)
16952963 .. 16955342
2380 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35785.4

Sequence Viewer

Length: 564 bp
ATGGCGGATTCTCCTCAAAGAAGAAGGGATTCACGATCTCCTTCACCCCGAAAAGAACGAGCTAGATCCAGATCCAGGTCTAGGTCCAGGTCTAGATCCAGGCCCAGGCTTAGGTCCAGGTCAAGATCTTTGCCAAGGCCTGTTTCTCCATCACGAAGCCGTGGAAGGTCAAGGTCAAGAAGCCGTGGAAGAAGTGAAGTTGAAAACCCTGGTACCACTCTCTATGTGACTGGCCTATCTACAAGAGTCACTGACAAGGATCTTGAAGCACATTTCGCCAAGGAAGGAAAGGTTGCGTCTTGTTTTCTTGTGATGGAGCCGCGCACCCGTGTGTCTCGTGGTTTTGCCTTTGTTACAATGAGCAGCCTTAAAGATGCTGAGCGGTGCATTAAATATCTCAACCAGTCTGTACTAGAAGGCCGATACATAACTGTGGAAAGGAAAATATTGCATCAAGCAACAATCAGAGATGATAAGATCCAGGAGAAAGCGCCCGAGAACTCCCACCCCAGGCCACTATCTTGGCTTGAAAAGCTCCAGAGACAGCGATCGAGAAGGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

187

Amino Acids

21.74

Weight (kDa)

11.73

Isoelectric Point (pI)

100.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 88 - 157 1.8e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 212
AccBSI CCGCTC 1 cut(s) 382
AccII CGCG 1 cut(s) 322
AciI CCGC 3 cut(s) 5, 320, 382
AclWI GGATC 5 cut(s) 60, 66, 90, 267, 472
AfaI GTAC 2 cut(s) 214, 411
AfiI CCNNNNNNNGG 5 cut(s) 75, 81, 105, 111, 510
AgsI TTSAA 3 cut(s) 203, 266, 530
AjnI CCWGG 8 cut(s) 74, 86, 98, 104, 116, 208, 480, 509
AjuI GAANNNNNNNTTGG 2 cut(s) 127, 159
AleI CACNNNNGTG 1 cut(s) 329
AluBI AGCT 2 cut(s) 62, 535
AluI AGCT 2 cut(s) 62, 535
Alw26I GTCTC 2 cut(s) 339, 535
AlwI GGATC 5 cut(s) 60, 66, 90, 267, 472
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 6 cut(s) 101, 137, 232, 418, 512, 557
ApeKI GCWGC 1 cut(s) 363
Asp700I GAANNNNTTC 1 cut(s) 28
Asp718I GGTACC 1 cut(s) 212
AspLEI GCGC 2 cut(s) 324, 493
AspS9I GGNCC 3 cut(s) 84, 102, 114
AsuHPI GGTGA 1 cut(s) 36
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 2 cut(s) 84, 114
BaeI ACNNNNGTAYC 2 cut(s) 196, 229
BanI GGYRCC 1 cut(s) 212
BauI CACGAG 1 cut(s) 336
BbvI GCAGC 1 cut(s) 375
BccI CCATC 2 cut(s) 157, 307
BceAI ACGGC 3 cut(s) 144, 168, 544
BciT130I CCWGG 8 cut(s) 76, 88, 100, 106, 118, 210, 482, 511
BcoDI GTCTC 2 cut(s) 339, 535
BfaI CTAG 4 cut(s) 63, 81, 93, 413
BfoI RGCGCY 1 cut(s) 494
BglII AGATCT 1 cut(s) 125
BisI GCNGC 2 cut(s) 320, 364
BlpI GCTNAGC 1 cut(s) 378
BlsI GCNGC 2 cut(s) 321, 365
Bme1390I CCNGG 8 cut(s) 76, 88, 100, 106, 118, 210, 482, 511
Bme18I GGWCC 2 cut(s) 84, 114
BmeT110I CYCGRG 1 cut(s) 494
BmgT120I GGNCC 3 cut(s) 84, 102, 114
BmiI GGNNCC 2 cut(s) 214, 318
BmrFI CCNGG 8 cut(s) 76, 88, 100, 106, 118, 210, 482, 511
BmsI GCATC 2 cut(s) 364, 460
BpmI CTGGAG 1 cut(s) 521
Bpu10I CCTNAGC 1 cut(s) 110
Bpu1102I GCTNAGC 1 cut(s) 378
BsaBI GATNNNNATC 1 cut(s) 70
BsaJI CCNNGG 7 cut(s) 104, 134, 160, 184, 208, 279, 509
Bsc4I CCNNNNNNNGG 5 cut(s) 75, 81, 105, 111, 510
Bse1I ACTGG 2 cut(s) 235, 403
Bse8I GATNNNNATC 1 cut(s) 70
BseBI CCWGG 8 cut(s) 76, 88, 100, 106, 118, 210, 482, 511
BseDI CCNNGG 7 cut(s) 104, 134, 160, 184, 208, 279, 509
BseJI GATNNNNATC 1 cut(s) 70
BseLI CCNNNNNNNGG 5 cut(s) 75, 81, 105, 111, 510
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 2 cut(s) 235, 403
BseXI GCAGC 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 322
Bsh1285I CGRYCG 1 cut(s) 551
BshFI GGCC 6 cut(s) 103, 139, 234, 420, 514, 559
BshNI GGYRCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 551
BsiHKCI CYCGRG 1 cut(s) 494
BslI CCNNNNNNNGG 5 cut(s) 75, 81, 105, 111, 510
BsmAI GTCTC 2 cut(s) 339, 535
BsnI GGCC 6 cut(s) 103, 139, 234, 420, 514, 559
BsoBI CYCGRG 1 cut(s) 494
Bsp143I GATC 8 cut(s) 35, 65, 71, 95, 125, 259, 477, 548
Bsp1720I GCTNAGC 1 cut(s) 378
BspACI CCGC 3 cut(s) 5, 320, 382
BspANI GGCC 6 cut(s) 103, 139, 234, 420, 514, 559
BspCNI CTCAG 1 cut(s) 370
BspFNI CGCG 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 214, 318
BspPI GGATC 5 cut(s) 60, 66, 90, 267, 472
BspT107I GGYRCC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 382
BsrI ACTGG 2 cut(s) 235, 403
BssECI CCNNGG 7 cut(s) 104, 134, 160, 184, 208, 279, 509
BssMI GATC 8 cut(s) 35, 65, 71, 95, 125, 259, 477, 548
BssSI CACGAG 1 cut(s) 336
BssT1I CCWWGG 2 cut(s) 134, 279
Bst2BI CACGAG 1 cut(s) 336
Bst2UI CCWGG 8 cut(s) 76, 88, 100, 106, 118, 210, 482, 511
Bst4CI ACNGT 1 cut(s) 433
BstDEI CTNAG 2 cut(s) 110, 378
BstDSI CCRYGG 2 cut(s) 160, 184
BstFNI CGCG 1 cut(s) 322
BstH2I RGCGCY 1 cut(s) 494
BstHHI GCGC 2 cut(s) 324, 493
BstKTI GATC 8 cut(s) 38, 68, 74, 98, 128, 262, 480, 551
BstMAI GTCTC 2 cut(s) 339, 535
BstMBI GATC 8 cut(s) 35, 65, 71, 95, 125, 259, 477, 548
BstMCI CGRYCG 1 cut(s) 551
BstMWI GCNNNNNNNGC 2 cut(s) 275, 532
BstNI CCWGG 8 cut(s) 76, 88, 100, 106, 118, 210, 482, 511
BstSCI CCNGG 8 cut(s) 74, 86, 98, 104, 116, 208, 480, 509
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 375
BstX2I RGATCY 6 cut(s) 65, 71, 95, 125, 259, 477
BstXI CCANNNNNNTGG 1 cut(s) 522
BstYI RGATCY 6 cut(s) 65, 71, 95, 125, 259, 477
BsuRI GGCC 6 cut(s) 103, 139, 234, 420, 514, 559
BtgI CCRYGG 2 cut(s) 160, 184
BtsIMutI CAGTG 1 cut(s) 249
CfoI GCGC 2 cut(s) 324, 493
Cfr13I GGNCC 3 cut(s) 84, 102, 114
CseI GACGC 1 cut(s) 285
Csp6I GTAC 2 cut(s) 213, 410
CviQI GTAC 2 cut(s) 213, 410
DdeI CTNAG 2 cut(s) 110, 378
DpnI GATC 8 cut(s) 37, 67, 73, 97, 127, 261, 479, 550
DpnII GATC 8 cut(s) 35, 65, 71, 95, 125, 259, 477, 548
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 134, 279
Eco147I AGGCCT 1 cut(s) 139
Eco47I GGWCC 2 cut(s) 84, 114
Eco88I CYCGRG 1 cut(s) 494
EcoRII CCWGG 8 cut(s) 74, 86, 98, 104, 116, 208, 480, 509
EcoT14I CCWWGG 2 cut(s) 134, 279
ErhI CCWWGG 2 cut(s) 134, 279
FaiI YATR 2 cut(s) 225, 428
Fnu4HI GCNGC 2 cut(s) 320, 364
Fsp4HI GCNGC 2 cut(s) 320, 364
FspBI CTAG 4 cut(s) 63, 81, 93, 413
GlaI GCGC 2 cut(s) 323, 492
GluI GCNGC 2 cut(s) 320, 364
GsuI CTGGAG 1 cut(s) 521
HaeII RGCGCY 1 cut(s) 494
HaeIII GGCC 6 cut(s) 103, 139, 234, 420, 514, 559
HgaI GACGC 1 cut(s) 285
HhaI GCGC 2 cut(s) 324, 493
Hin6I GCGC 2 cut(s) 322, 491
HinP1I GCGC 2 cut(s) 322, 491
HinfI GANTC 3 cut(s) 8, 29, 246
HphI GGTGA 1 cut(s) 36
Hpy188I TCNGA 1 cut(s) 467
Hpy188III TCNNGA 9 cut(s) 33, 69, 93, 123, 153, 177, 263, 538, 552
HpyAV CCTTC 6 cut(s) 18, 51, 159, 278, 410, 549
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4V TGCA 2 cut(s) 387, 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 532
HpyF3I CTNAG 2 cut(s) 110, 378
HspAI GCGC 2 cut(s) 322, 491
KpnI GGTACC 1 cut(s) 216
Kzo9I GATC 8 cut(s) 35, 65, 71, 95, 125, 259, 477, 548
LmnI GCTCC 2 cut(s) 316, 540
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 2 cut(s) 364, 460
MaeI CTAG 4 cut(s) 63, 81, 93, 413
MaeIII GTNAC 3 cut(s) 226, 247, 352
MalI GATC 8 cut(s) 37, 67, 73, 97, 127, 261, 479, 550
MbiI CCGCTC 1 cut(s) 382
MboI GATC 8 cut(s) 35, 65, 71, 95, 125, 259, 477, 548
MboII GAAGA 2 cut(s) 33, 201
MflI RGATCY 6 cut(s) 65, 71, 95, 125, 259, 477
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 1 cut(s) 24
MroXI GAANNNNTTC 1 cut(s) 28
MseI TTAA 2 cut(s) 369, 390
MslI CAYNNNNRTG 2 cut(s) 329, 431
MspR9I CCNGG 8 cut(s) 76, 88, 100, 106, 118, 210, 482, 511
MvaI CCWGG 8 cut(s) 76, 88, 100, 106, 118, 210, 482, 511
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 275, 532
NdeII GATC 8 cut(s) 35, 65, 71, 95, 125, 259, 477, 548
NlaIV GGNNCC 2 cut(s) 214, 318
NmuCI GTSAC 2 cut(s) 226, 247
OliI CACNNNNGTG 1 cut(s) 329
PceI AGGCCT 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 557
PdmI GAANNNNTTC 1 cut(s) 28
PfeI GAWTC 2 cut(s) 8, 29
PfoI TCCNGGA 1 cut(s) 480
PkrI GCNGC 2 cut(s) 321, 365
Ple19I CGATCG 1 cut(s) 551
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Psp6I CCWGG 8 cut(s) 74, 86, 98, 104, 116, 208, 480, 509
PspGI CCWGG 8 cut(s) 74, 86, 98, 104, 116, 208, 480, 509
PspN4I GGNNCC 2 cut(s) 214, 318
PspPI GGNCC 3 cut(s) 84, 102, 114
PsuI RGATCY 6 cut(s) 65, 71, 95, 125, 259, 477
PvuI CGATCG 1 cut(s) 551
RsaI GTAC 2 cut(s) 214, 411
RsaNI GTAC 2 cut(s) 213, 410
RseI CAYNNNNRTG 2 cut(s) 329, 431
SaqAI TTAA 2 cut(s) 369, 390
SatI GCNGC 2 cut(s) 320, 364
Sau3AI GATC 8 cut(s) 35, 65, 71, 95, 125, 259, 477, 548
Sau96I GGNCC 3 cut(s) 84, 102, 114
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 8 cut(s) 76, 88, 100, 106, 118, 210, 482, 511
SfaNI GCATC 2 cut(s) 364, 460
SinI GGWCC 2 cut(s) 84, 114
SmiMI CAYNNNNRTG 2 cut(s) 329, 431
SseBI AGGCCT 1 cut(s) 139
SsiI CCGC 3 cut(s) 5, 320, 382
SspI AATATT 1 cut(s) 447
SspMI CTAG 4 cut(s) 63, 81, 93, 413
StuI AGGCCT 1 cut(s) 139
StyD4I CCNGG 8 cut(s) 74, 86, 98, 104, 116, 208, 480, 509
StyI CCWWGG 2 cut(s) 134, 279
TaaI ACNGT 1 cut(s) 433
TaqI TCGA 1 cut(s) 551
TatI WGTACW 1 cut(s) 409
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 2 cut(s) 8, 29
Tru1I TTAA 2 cut(s) 369, 390
Tru9I TTAA 2 cut(s) 369, 390
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 2 cut(s) 226, 247
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 2 cut(s) 226, 247
TspRI CASTG 1 cut(s) 256
VpaK11BI GGWCC 2 cut(s) 84, 114
XbaI TCTAGA 1 cut(s) 92
XmnI GAANNNNTTC 1 cut(s) 28
XspI CTAG 4 cut(s) 63, 81, 93, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.