Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002754.1

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

90089 .. 91477

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002754.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgccatacacgagagcaaaaaggtctgcttcaccacagacctctgtctcacctgtcaaaggccgccgatcgagatcattgtcgaggtctagaaggagtcgttctaggagcccatctgtggatgcaaccaatcctggaaacaacttgtatgtaacaggcttatccacaagggttacctctgctgatgttgagaaattctttaacaaagaaggcaaggtgttggagtgccatcttgtaactgaccctcgctccagagaatctcgtggatttgcatttgtcacaatggaaactgtagaggatgcagagcgatgcattaagtacttgaatcgttctgtgcttgaaggtcgactagtcactgtggaaaaggtatcagtttctgtcaaaggatcaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

131

Amino Acids

14.63

Weight (kDa)

10.7

Isoelectric Point (pI)

77.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	346
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	59, 118
AgsI	TTSAA	2 cut(s)	325, 341
AhlI	ACTAGT	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	394
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	24, 42
BanII	GRGCYC	1 cut(s)	113
BauI	CACGAG	2 cut(s)	10, 261
BccI	CCATC	2 cut(s)	121, 237
BciT130I	CCWGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	52
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	3 cut(s)	90, 105, 350
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	3 cut(s)	112, 289, 299
BoxI	GACNNNNGTC	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	235
BsaBI	GATNNNNATC	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 118
Bse8I	GATNNNNATC	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	135
BseGI	GGATG	2 cut(s)	127, 304
BseJI	GATNNNNATC	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	59, 118
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	59, 118
BsmAI	GTCTC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	3 cut(s)	68, 74, 386
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	394
BssMI	GATC	3 cut(s)	68, 74, 386
BssSI	CACGAG	2 cut(s)	10, 261
Bst2BI	CACGAG	2 cut(s)	10, 261
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	292, 358
BstEII	GGTNACC	1 cut(s)	172
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	127, 304
BstKTI	GATC	3 cut(s)	71, 77, 389
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	3 cut(s)	68, 74, 386
BstMCI	CGRYCG	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	135
BstPAI	GACNNNNGTC	1 cut(s)	44
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	127, 304
BtsIMutI	CAGTG	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	319
CviJI	RGCY	3 cut(s)	63, 111, 159
CviKI_1	RGCY	3 cut(s)	63, 111, 159
CviQI	GTAC	1 cut(s)	319
DpnI	GATC	3 cut(s)	70, 76, 388
DpnII	GATC	3 cut(s)	68, 74, 386
Eco24I	GRGCYC	1 cut(s)	113
Eco91I	GGTNACC	1 cut(s)	172
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoO65I	GGTNACC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	113
FaiI	YATR	2 cut(s)	7, 150
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	2 cut(s)	134, 311
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	3 cut(s)	90, 105, 350
GluI	GCNGC	1 cut(s)	64
GsuI	CTGGAG	1 cut(s)	235
HaeIII	GGCC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	347
HindII	GTYRAC	1 cut(s)	347
HinfI	GANTC	3 cut(s)	97, 257, 325
HphI	GGTGA	2 cut(s)	24, 42
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188III	TCNNGA	4 cut(s)	72, 90, 252, 390
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	3 cut(s)	87, 203, 335
HpyCH4III	ACNGT	2 cut(s)	292, 358
HpyCH4V	TGCA	4 cut(s)	125, 272, 302, 312
Kzo9I	GATC	3 cut(s)	68, 74, 386
LmnI	GCTCC	2 cut(s)	108, 254
LpnPI	CCDG	5 cut(s)	66, 120, 141, 147, 265
LweI	GCATC	3 cut(s)	112, 289, 299
MaeI	CTAG	3 cut(s)	90, 105, 350
MaeIII	GTNAC	5 cut(s)	151, 172, 235, 277, 352
MalI	GATC	3 cut(s)	70, 76, 388
MboI	GATC	3 cut(s)	68, 74, 386
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	5 cut(s)	52, 78, 187, 255, 289
Mph1103I	ATGCAT	1 cut(s)	314
MseI	TTAA	2 cut(s)	201, 315
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
NdeII	GATC	3 cut(s)	68, 74, 386
NlaIV	GGNNCC	1 cut(s)	110
NmuCI	GTSAC	2 cut(s)	277, 352
NsiI	ATGCAT	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	257, 325
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	65
Ple19I	CGATCG	1 cut(s)	71
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PshAI	GACNNNNGTC	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	133
PspEI	GGTNACC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	110
PstNI	CAGNNNCTG	1 cut(s)	377
PvuI	CGATCG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SalI	GTCGAC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	201, 315
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	3 cut(s)	68, 74, 386
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	8 cut(s)	26, 44, 55, 89, 179, 219, 346, 369
SfaNI	GCATC	3 cut(s)	112, 289, 299
SfcI	CTRYAG	1 cut(s)	291
SpeI	ACTAGT	1 cut(s)	349
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	3 cut(s)	90, 105, 350
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	292, 358
TaqI	TCGA	3 cut(s)	71, 83, 346
TasI	AATT	1 cut(s)	194
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	257, 325
Tru1I	TTAA	2 cut(s)	201, 315
Tru9I	TTAA	2 cut(s)	201, 315
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	2 cut(s)	277, 352
Tsp45I	GTSAC	2 cut(s)	277, 352
TspRI	CASTG	1 cut(s)	361
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	1 cut(s)	194
XbaI	TCTAGA	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	346
XspI	CTAG	3 cut(s)	90, 105, 350
ZrmI	AGTACT	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.