RLG00000016780

regulation of mRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001558
Physical Location & Seq
Reverse (-)
9909570 .. 9912827
3258 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016780

Sequence Viewer

Length: 711 bp
ATGGCGGATTCTCCTCGCAGAAGGTATTCTCGATCCCCTTCTCCATGGAGAGCTCAGTCTCGGTCCAGGTCCAGGTCCAGGTCTATGTCCAGGCCTAGGTCAAGATCAAGATCCTGGTCTAGGCCGAGGCACAGGTCGAGAAGTCGTGGCAGGTCAAGATCCAGAAGTCGTGGAAGGGATGCTGTTGTAAATCCTGGAAATACACTCTATGTGACTGGCCTATCTCAAAGGGTCTCTGAAAAGGACGTTGAAAGGCACTTTTCAAAGGAGGGAAAGGTAGCTTCATGTTTTCTTGTTGTTGAACCTCGTTCGCGAATTTCCCGTGGTTTTGCCTTCGTTACGATGGATTCTAATGAAGATGCAGAACGGTGCATTAAACATCTCAACCAGTCAGTTCTGGAAGGGCGATACATAACTGTGGAAAGGTCCCGGAGGAAGCGACCAAGGACTCCGACACCTGGGCATTATCTCGGATTGAAAAATACTAGGGACTATGCCCGTGGTGACCGTGACCGTGATCGTGGGAGGTACCGTGGGGGCTCAGGTCGAGATGACTATGGATATAGGAGGTCTCCTAGACGCTCACCCTACAGAGGTGGTCGCGATTATTCTCCTAGGGGCTCATCTTATGGTGGTGGAAGATCAAGAAGGGAGAGGTCTTATTCACCCTATGGCAGTCCAGAAAGGAAATACACTCGTGGCTCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

237

Amino Acids

27.53

Weight (kDa)

11.68

Isoelectric Point (pI)

99.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 69 - 138 5.6e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 141
Acc65I GGTACC 1 cut(s) 528
AccB1I GGYRCC 1 cut(s) 528
AccII CGCG 2 cut(s) 313, 603
AciI CCGC 1 cut(s) 5
AclWI GGATC 3 cut(s) 27, 105, 153
AcsI RAATTY 1 cut(s) 315
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 6 cut(s) 72, 78, 96, 120, 458, 593
AgsI TTSAA 4 cut(s) 251, 264, 302, 478
AjnI CCWGG 7 cut(s) 65, 71, 77, 89, 113, 193, 457
AluBI AGCT 2 cut(s) 53, 281
AluI AGCT 2 cut(s) 53, 281
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 3 cut(s) 63, 238, 576
AlwI GGATC 3 cut(s) 27, 105, 153
AoxI GGCC 3 cut(s) 92, 122, 217
ApoI RAATTY 1 cut(s) 315
Asp700I GAANNNNTTC 1 cut(s) 25
Asp718I GGTACC 1 cut(s) 528
AspA2I CCTAGG 2 cut(s) 95, 614
AspS9I GGNCC 4 cut(s) 63, 69, 75, 426
AsuC2I CCSGG 1 cut(s) 430
AsuHPI GGTGA 3 cut(s) 515, 576, 657
AvaII GGWCC 4 cut(s) 63, 69, 75, 426
AvrII CCTAGG 2 cut(s) 95, 614
BanI GGYRCC 1 cut(s) 528
BanII GRGCYC 3 cut(s) 55, 542, 623
BauI CACGAG 1 cut(s) 696
Bbv12I GWGCWC 1 cut(s) 55
BccI CCATC 1 cut(s) 337
BciT130I CCWGG 7 cut(s) 67, 73, 79, 91, 115, 195, 459
BcnI CCSGG 1 cut(s) 430
BcoDI GTCTC 3 cut(s) 63, 238, 576
BfaI CTAG 6 cut(s) 96, 120, 486, 576, 615, 705
BfmI CTRYAG 1 cut(s) 589
BfuAI ACCTGC 1 cut(s) 141
BlnI CCTAGG 2 cut(s) 95, 614
Bme1390I CCNGG 8 cut(s) 67, 73, 79, 91, 115, 195, 430, 459
Bme18I GGWCC 4 cut(s) 63, 69, 75, 426
BmgT120I GGNCC 4 cut(s) 63, 69, 75, 426
BmiI GGNNCC 2 cut(s) 428, 530
BmrFI CCNGG 8 cut(s) 67, 73, 79, 91, 115, 195, 430, 459
BmsI GCATC 2 cut(s) 169, 349
Bpu10I CCTNAGC 1 cut(s) 541
BpuMI CCSGG 1 cut(s) 430
BsaBI GATNNNNATC 1 cut(s) 109
BsaI GGTCTC 2 cut(s) 238, 576
BsaJI CCNNGG 9 cut(s) 44, 95, 125, 322, 443, 458, 499, 532, 614
BsaXI ACNNNNNCTCC 2 cut(s) 517, 547
Bsc4I CCNNNNNNNGG 6 cut(s) 72, 78, 96, 120, 458, 593
Bse1I ACTGG 2 cut(s) 220, 388
Bse8I GATNNNNATC 1 cut(s) 109
BseBI CCWGG 7 cut(s) 67, 73, 79, 91, 115, 195, 459
BseDI CCNNGG 9 cut(s) 44, 95, 125, 322, 443, 458, 499, 532, 614
BseGI GGATG 1 cut(s) 184
BseJI GATNNNNATC 1 cut(s) 109
BseLI CCNNNNNNNGG 6 cut(s) 72, 78, 96, 120, 458, 593
BseMII CTCAG 2 cut(s) 68, 555
BseNI ACTGG 2 cut(s) 220, 388
Bsh1236I CGCG 2 cut(s) 313, 603
BshFI GGCC 3 cut(s) 94, 124, 219
BshNI GGYRCC 1 cut(s) 528
BsiHKAI GWGCWC 1 cut(s) 55
BsiSI CCGG 1 cut(s) 430
BslFI GGGAC 2 cut(s) 412, 503
BslI CCNNNNNNNGG 6 cut(s) 72, 78, 96, 120, 458, 593
BsmAI GTCTC 3 cut(s) 63, 238, 576
BsmFI GGGAC 2 cut(s) 412, 503
BsnI GGCC 3 cut(s) 94, 124, 219
Bso31I GGTCTC 2 cut(s) 238, 576
Bsp1286I GDGCHC 3 cut(s) 55, 542, 623
Bsp143I GATC 6 cut(s) 32, 104, 110, 158, 517, 641
Bsp19I CCATGG 1 cut(s) 44
Bsp68I TCGCGA 2 cut(s) 313, 603
BspACI CCGC 1 cut(s) 5
BspANI GGCC 3 cut(s) 94, 124, 219
BspCNI CTCAG 2 cut(s) 67, 554
BspFNI CGCG 2 cut(s) 313, 603
BspLI GGNNCC 2 cut(s) 428, 530
BspMI ACCTGC 1 cut(s) 141
BspPI GGATC 3 cut(s) 27, 105, 153
BspT107I GGYRCC 1 cut(s) 528
BspTNI GGTCTC 2 cut(s) 238, 576
BsrI ACTGG 2 cut(s) 220, 388
BssECI CCNNGG 9 cut(s) 44, 95, 125, 322, 443, 458, 499, 532, 614
BssMI GATC 6 cut(s) 32, 104, 110, 158, 517, 641
BssSI CACGAG 1 cut(s) 696
BssT1I CCWWGG 4 cut(s) 44, 95, 443, 614
Bst2BI CACGAG 1 cut(s) 696
Bst2UI CCWGG 7 cut(s) 67, 73, 79, 91, 115, 195, 459
Bst4CI ACNGT 5 cut(s) 369, 418, 509, 515, 533
BstDEI CTNAG 2 cut(s) 54, 541
BstDSI CCRYGG 4 cut(s) 44, 322, 499, 532
BstEII GGTNACC 1 cut(s) 503
BstENI CCTNNNNNAGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 2 cut(s) 313, 603
BstKTI GATC 6 cut(s) 35, 107, 113, 161, 520, 644
BstMAI GTCTC 3 cut(s) 63, 238, 576
BstMBI GATC 6 cut(s) 32, 104, 110, 158, 517, 641
BstNI CCWGG 7 cut(s) 67, 73, 79, 91, 115, 195, 459
BstPI GGTNACC 1 cut(s) 503
BstSCI CCNGG 8 cut(s) 65, 71, 77, 89, 113, 193, 428, 457
BstSFI CTRYAG 1 cut(s) 589
BstUI CGCG 2 cut(s) 313, 603
BstX2I RGATCY 2 cut(s) 110, 158
BstYI RGATCY 2 cut(s) 110, 158
BsuRI GGCC 3 cut(s) 94, 124, 219
BtgI CCRYGG 4 cut(s) 44, 322, 499, 532
BtsCI GGATG 1 cut(s) 184
BtuMI TCGCGA 2 cut(s) 313, 603
BveI ACCTGC 1 cut(s) 141
Cfr13I GGNCC 4 cut(s) 63, 69, 75, 426
CseI GACGC 1 cut(s) 588
Csp6I GTAC 1 cut(s) 529
CviAII CATG 2 cut(s) 45, 285
CviJI RGCY 8 cut(s) 53, 94, 124, 219, 281, 540, 621, 702
CviKI_1 RGCY 8 cut(s) 53, 94, 124, 219, 281, 540, 621, 702
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 2 cut(s) 54, 541
DpnI GATC 6 cut(s) 34, 106, 112, 160, 519, 643
DpnII GATC 6 cut(s) 32, 104, 110, 158, 517, 641
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 53
Eco130I CCWWGG 4 cut(s) 44, 95, 443, 614
Eco147I AGGCCT 1 cut(s) 94
Eco24I GRGCYC 3 cut(s) 55, 542, 623
Eco31I GGTCTC 2 cut(s) 238, 576
Eco47I GGWCC 4 cut(s) 63, 69, 75, 426
Eco53kI GAGCTC 1 cut(s) 53
Eco91I GGTNACC 1 cut(s) 503
EcoICRI GAGCTC 1 cut(s) 53
EcoNI CCTNNNNNAGG 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 426
EcoO65I GGTNACC 1 cut(s) 503
EcoRII CCWGG 7 cut(s) 65, 71, 77, 89, 113, 193, 457
EcoT14I CCWWGG 4 cut(s) 44, 95, 443, 614
EcoT38I GRGCYC 3 cut(s) 55, 542, 623
ErhI CCWWGG 4 cut(s) 44, 95, 443, 614
FaeI CATG 2 cut(s) 48, 288
FaqI GGGAC 2 cut(s) 412, 503
FatI CATG 2 cut(s) 44, 284
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 3 cut(s) 55, 542, 623
FspBI CTAG 6 cut(s) 96, 120, 486, 576, 615, 705
HaeIII GGCC 3 cut(s) 94, 124, 219
HapII CCGG 1 cut(s) 430
HgaI GACGC 1 cut(s) 588
Hin1II CATG 2 cut(s) 48, 288
HinfI GANTC 3 cut(s) 8, 347, 448
HpaII CCGG 1 cut(s) 430
HphI GGTGA 3 cut(s) 515, 576, 657
Hpy188I TCNGA 3 cut(s) 238, 453, 473
HpyAV CCTTC 6 cut(s) 15, 48, 168, 343, 395, 642
HpyCH4III ACNGT 5 cut(s) 369, 418, 509, 515, 533
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 362, 372
HpyF3I CTNAG 2 cut(s) 54, 541
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 2 cut(s) 48, 288
KpnI GGTACC 1 cut(s) 532
Kzo9I GATC 6 cut(s) 32, 104, 110, 158, 517, 641
LweI GCATC 2 cut(s) 169, 349
MaeI CTAG 6 cut(s) 96, 120, 486, 576, 615, 705
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 4 cut(s) 211, 337, 503, 509
MalI GATC 6 cut(s) 34, 106, 112, 160, 519, 643
MboI GATC 6 cut(s) 32, 104, 110, 158, 517, 641
MboII GAAGA 2 cut(s) 368, 651
MflI RGATCY 2 cut(s) 110, 158
MhlI GDGCHC 3 cut(s) 55, 542, 623
MluCI AATT 1 cut(s) 315
MlyI GAGTC 1 cut(s) 442
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 9 cut(s) 24, 120, 262, 315, 426, 519, 561, 587, 648
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 1 cut(s) 430
MspR9I CCNGG 8 cut(s) 67, 73, 79, 91, 115, 195, 430, 459
MvaI CCWGG 7 cut(s) 67, 73, 79, 91, 115, 195, 459
MvnI CGCG 2 cut(s) 313, 603
NciI CCSGG 1 cut(s) 430
NcoI CCATGG 1 cut(s) 44
NdeII GATC 6 cut(s) 32, 104, 110, 158, 517, 641
NlaIII CATG 2 cut(s) 48, 288
NlaIV GGNNCC 2 cut(s) 428, 530
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 3 cut(s) 211, 503, 509
NruI TCGCGA 2 cut(s) 313, 603
PceI AGGCCT 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 2 cut(s) 8, 347
PfoI TCCNGGA 2 cut(s) 193, 428
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PpuMI RGGWCCY 1 cut(s) 426
Psp124BI GAGCTC 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 426
Psp6I CCWGG 7 cut(s) 65, 71, 77, 89, 113, 193, 457
PspEI GGTNACC 1 cut(s) 503
PspGI CCWGG 7 cut(s) 65, 71, 77, 89, 113, 193, 457
PspN4I GGNNCC 2 cut(s) 428, 530
PspPI GGNCC 4 cut(s) 63, 69, 75, 426
PspPPI RGGWCCY 1 cut(s) 426
PsuI RGATCY 2 cut(s) 110, 158
RruI TCGCGA 2 cut(s) 313, 603
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
RseI CAYNNNNRTG 1 cut(s) 416
SacI GAGCTC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 375
Sau3AI GATC 6 cut(s) 32, 104, 110, 158, 517, 641
Sau96I GGNCC 4 cut(s) 63, 69, 75, 426
SchI GAGTC 1 cut(s) 442
ScrFI CCNGG 8 cut(s) 67, 73, 79, 91, 115, 195, 430, 459
SduI GDGCHC 3 cut(s) 55, 542, 623
SfaNI GCATC 2 cut(s) 169, 349
SfcI CTRYAG 1 cut(s) 589
SinI GGWCC 4 cut(s) 63, 69, 75, 426
SmiMI CAYNNNNRTG 1 cut(s) 416
Sse9I AATT 1 cut(s) 315
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 1 cut(s) 5
SspMI CTAG 6 cut(s) 96, 120, 486, 576, 615, 705
SstI GAGCTC 1 cut(s) 55
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 8 cut(s) 65, 71, 77, 89, 113, 193, 428, 457
StyI CCWWGG 4 cut(s) 44, 95, 443, 614
TaaI ACNGT 5 cut(s) 369, 418, 509, 515, 533
TaiI ACGT 1 cut(s) 249
TaqI TCGA 3 cut(s) 31, 137, 547
TaqII GACCGA 1 cut(s) 51
TasI AATT 1 cut(s) 315
TfiI GAWTC 2 cut(s) 8, 347
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TseFI GTSAC 3 cut(s) 211, 503, 509
Tsp45I GTSAC 3 cut(s) 211, 503, 509
TspDTI ATGAA 2 cut(s) 273, 369
VpaK11BI GGWCC 4 cut(s) 63, 69, 75, 426
XagI CCTNNNNNAGG 1 cut(s) 118
XapI RAATTY 1 cut(s) 315
XbaI TCTAGA 1 cut(s) 704
XmaJI CCTAGG 2 cut(s) 95, 614
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 6 cut(s) 96, 120, 486, 576, 615, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.