Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

10004208 .. 10007399

Gene Structure 3192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1123000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCGGATTCTCCACGCAAAAAGTATTCTCGATCCCCTTCTCCATGGAGAGCTCAGTCCAGGTCCAGGTCTAGGTCTTGGTCTAGGCCTCGATCAAGGTCGAGATCATGGTCTAGGCCACCAAGGCAGAGGTCTCGCTCTAGAAGTCGTGGCAGATCAAGGTCCAGAAGTCCTGGCAGGTCTGCTGCTATAAATCCTGGAAATACACTGTATGTGACTGGCCTATCTACAAGGGTCTCCGAGAAGGATGTTGAAAGGCACTTTTCAAAGGAGGGAAAGGTAGCTTCATGCTTTCTTGTTATGGAACCTAGGACTCGGATTTCTCGTGGTTTTGCCTTTGTTACAATGGACTCTGTTGAAGATGCTGAACGCTGCATTAAACATCTCAACCAGTCAGTTCTGGAAGGTCGATACATAACTGTTGAGAGGTCTCGGAGGAAGCGACCAAGAACGCCAACACCTGGGCATTATCTTGGGTTGAAAAATACTAGAGACTATGGCGACCGAGGTGATCGTGTTCGAGATCGTGAACGTGATCGTGGTAGGTACCGCGGGGGCTCAAGTCGTGATGACTATGGATATCGGAGGTCACCAAGGCGCTCACCCTATAGAGGTGGCCGCGATTATTCTCCTAGGGGCGGCTCACCTTATGGCGGAAGATCAAGAAGAGAGAGGTCTTATTCTCCATATGGCAGCCCGGAAAGGAAGTATGCCCGCGGCTCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

243

Amino Acids

28.17

Weight (kDa)

11.62

Isoelectric Point (pI)

93.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	70 - 139	1.2e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	168
Acc65I	GGTACC	1 cut(s)	546
AccB1I	GGYRCC	1 cut(s)	546
AccB7I	CCANNNNNTGG	1 cut(s)	461
AccII	CGCG	3 cut(s)	552, 621, 717
AciI	CCGC	8 cut(s)	5, 550, 552, 619, 639, 654, 715, 717
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	616
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	6 cut(s)	66, 72, 461, 611, 638, 653
AgsI	TTSAA	4 cut(s)	254, 267, 359, 481
AjnI	CCWGG	5 cut(s)	59, 65, 172, 196, 460
AluBI	AGCT	2 cut(s)	53, 284
AluI	AGCT	2 cut(s)	53, 284
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	4 cut(s)	138, 241, 435, 486
AlwI	GGATC	1 cut(s)	27
AoxI	GGCC	4 cut(s)	86, 116, 220, 616
ApeKI	GCWGC	3 cut(s)	185, 372, 693
Asp718I	GGTACC	1 cut(s)	546
AspA2I	CCTAGG	2 cut(s)	308, 632
AspLEI	GCGC	1 cut(s)	600
AspS9I	GGNCC	2 cut(s)	63, 162
AsuC2I	CCSGG	1 cut(s)	698
AsuHPI	GGTGA	4 cut(s)	521, 582, 594, 636
AvaII	GGWCC	2 cut(s)	63, 162
AvrII	CCTAGG	2 cut(s)	308, 632
BanI	GGYRCC	1 cut(s)	546
BanII	GRGCYC	2 cut(s)	55, 560
BauI	CACGAG	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	3 cut(s)	172, 359, 705
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	5 cut(s)	61, 67, 174, 198, 462
BcnI	CCSGG	1 cut(s)	698
BcoDI	GTCTC	4 cut(s)	138, 241, 435, 486
BfaI	CTAG	7 cut(s)	72, 84, 114, 141, 309, 489, 633
BfmI	CTRYAG	1 cut(s)	607
BfoI	RGCGCY	1 cut(s)	601
BfuAI	ACCTGC	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	124
BisI	GCNGC	6 cut(s)	186, 373, 619, 640, 694, 718
BlnI	CCTAGG	2 cut(s)	308, 632
BlsI	GCNGC	6 cut(s)	187, 374, 620, 641, 695, 719
Bme1390I	CCNGG	6 cut(s)	61, 67, 174, 198, 462, 698
Bme18I	GGWCC	2 cut(s)	63, 162
BmgT120I	GGNCC	2 cut(s)	63, 162
BmiI	GGNNCC	3 cut(s)	306, 548, 721
BmrFI	CCNGG	6 cut(s)	61, 67, 174, 198, 462, 698
BmsI	GCATC	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	706
BpuEI	CTTGAG	1 cut(s)	544
BpuMI	CCSGG	1 cut(s)	698
BsaI	GGTCTC	3 cut(s)	138, 241, 435
BsaJI	CCNNGG	9 cut(s)	44, 122, 308, 461, 505, 550, 593, 632, 715
Bsc4I	CCNNNNNNNGG	6 cut(s)	66, 72, 461, 611, 638, 653
Bse1I	ACTGG	2 cut(s)	223, 391
BseBI	CCWGG	5 cut(s)	61, 67, 174, 198, 462
BseDI	CCNNGG	9 cut(s)	44, 122, 308, 461, 505, 550, 593, 632, 715
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	6 cut(s)	66, 72, 461, 611, 638, 653
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	2 cut(s)	223, 391
BseXI	GCAGC	3 cut(s)	172, 359, 705
Bsh1236I	CGCG	3 cut(s)	552, 621, 717
Bsh1285I	CGRYCG	1 cut(s)	505
BshFI	GGCC	4 cut(s)	88, 118, 222, 618
BshNI	GGYRCC	1 cut(s)	546
BsiEI	CGRYCG	1 cut(s)	505
BsiHKAI	GWGCWC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	698
BslI	CCNNNNNNNGG	6 cut(s)	66, 72, 461, 611, 638, 653
BsmAI	GTCTC	4 cut(s)	138, 241, 435, 486
BsnI	GGCC	4 cut(s)	88, 118, 222, 618
Bso31I	GGTCTC	3 cut(s)	138, 241, 435
Bsp1286I	GDGCHC	2 cut(s)	55, 560
Bsp143I	GATC	8 cut(s)	32, 92, 104, 155, 511, 523, 535, 659
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	8 cut(s)	5, 550, 552, 619, 639, 654, 715, 717
BspANI	GGCC	4 cut(s)	88, 118, 222, 618
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	3 cut(s)	552, 621, 717
BspLI	GGNNCC	3 cut(s)	306, 548, 721
BspMI	ACCTGC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	546
BspTNI	GGTCTC	3 cut(s)	138, 241, 435
BsrI	ACTGG	2 cut(s)	223, 391
BssECI	CCNNGG	9 cut(s)	44, 122, 308, 461, 505, 550, 593, 632, 715
BssMI	GATC	8 cut(s)	32, 92, 104, 155, 511, 523, 535, 659
BssSI	CACGAG	1 cut(s)	324
BssT1I	CCWWGG	5 cut(s)	44, 122, 308, 593, 632
Bst2BI	CACGAG	1 cut(s)	324
Bst2UI	CCWGG	5 cut(s)	61, 67, 174, 198, 462
Bst4CI	ACNGT	2 cut(s)	210, 421
Bst6I	CTCTTC	1 cut(s)	661
BstC8I	GCNNGC	1 cut(s)	715
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	3 cut(s)	44, 550, 715
BstEII	GGTNACC	1 cut(s)	588
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	3 cut(s)	552, 621, 717
BstH2I	RGCGCY	1 cut(s)	601
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	8 cut(s)	35, 95, 107, 158, 514, 526, 538, 662
BstMAI	GTCTC	4 cut(s)	138, 241, 435, 486
BstMBI	GATC	8 cut(s)	32, 92, 104, 155, 511, 523, 535, 659
BstMCI	CGRYCG	1 cut(s)	505
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	5 cut(s)	61, 67, 174, 198, 462
BstPI	GGTNACC	1 cut(s)	588
BstSCI	CCNGG	6 cut(s)	59, 65, 172, 196, 460, 696
BstSFI	CTRYAG	1 cut(s)	607
BstUI	CGCG	3 cut(s)	552, 621, 717
BstV1I	GCAGC	3 cut(s)	172, 359, 705
BsuRI	GGCC	4 cut(s)	88, 118, 222, 618
BtgI	CCRYGG	3 cut(s)	44, 550, 715
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	206
BveI	ACCTGC	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	715
CfoI	GCGC	1 cut(s)	600
Cfr13I	GGNCC	2 cut(s)	63, 162
Cfr42I	CCGCGG	2 cut(s)	553, 718
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	3 cut(s)	45, 108, 288
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	8 cut(s)	34, 94, 106, 157, 513, 525, 537, 661
DpnII	GATC	8 cut(s)	32, 92, 104, 155, 511, 523, 535, 659
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	661
EciI	GGCGGA	2 cut(s)	20, 669
Ecl136II	GAGCTC	1 cut(s)	53
Eco130I	CCWWGG	5 cut(s)	44, 122, 308, 593, 632
Eco147I	AGGCCT	1 cut(s)	88
Eco24I	GRGCYC	2 cut(s)	55, 560
Eco31I	GGTCTC	3 cut(s)	138, 241, 435
Eco32I	GATATC	1 cut(s)	581
Eco47I	GGWCC	2 cut(s)	63, 162
Eco53kI	GAGCTC	1 cut(s)	53
Eco91I	GGTNACC	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	588
EcoRII	CCWGG	5 cut(s)	59, 65, 172, 196, 460
EcoRV	GATATC	1 cut(s)	581
EcoT14I	CCWWGG	5 cut(s)	44, 122, 308, 593, 632
EcoT38I	GRGCYC	2 cut(s)	55, 560
ErhI	CCWWGG	5 cut(s)	44, 122, 308, 593, 632
FaeI	CATG	3 cut(s)	48, 111, 291
FatI	CATG	3 cut(s)	44, 107, 287
FauI	CCCGC	2 cut(s)	545, 722
FauNDI	CATATG	1 cut(s)	688
Fnu4HI	GCNGC	6 cut(s)	186, 373, 619, 640, 694, 718
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	2 cut(s)	55, 560
Fsp4HI	GCNGC	6 cut(s)	186, 373, 619, 640, 694, 718
FspBI	CTAG	7 cut(s)	72, 84, 114, 141, 309, 489, 633
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	6 cut(s)	186, 373, 619, 640, 694, 718
GsuI	CTGGAG	1 cut(s)	706
HaeII	RGCGCY	1 cut(s)	601
HaeIII	GGCC	4 cut(s)	88, 118, 222, 618
HapII	CCGG	1 cut(s)	698
HhaI	GCGC	1 cut(s)	600
Hin1II	CATG	3 cut(s)	48, 111, 291
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HinfI	GANTC	3 cut(s)	8, 313, 350
HpaII	CCGG	1 cut(s)	698
HphI	GGTGA	4 cut(s)	521, 582, 594, 636
Hpy166II	GTNNAC	1 cut(s)	530
Hpy188I	TCNGA	4 cut(s)	241, 318, 435, 585
Hpy8I	GTNNAC	1 cut(s)	530
HpyAV	CCTTC	3 cut(s)	48, 238, 398
HpyCH4III	ACNGT	2 cut(s)	210, 421
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	1 cut(s)	375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	3 cut(s)	48, 111, 291
HspAI	GCGC	1 cut(s)	598
KpnI	GGTACC	1 cut(s)	550
KspI	CCGCGG	2 cut(s)	553, 718
Kzo9I	GATC	8 cut(s)	32, 92, 104, 155, 511, 523, 535, 659
LmnI	GCTCC	1 cut(s)	725
Lsp1109I	GCAGC	3 cut(s)	172, 359, 705
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	7 cut(s)	72, 84, 114, 141, 309, 489, 633
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	3 cut(s)	214, 340, 588
MalI	GATC	8 cut(s)	34, 94, 106, 157, 513, 525, 537, 661
MboI	GATC	8 cut(s)	32, 92, 104, 155, 511, 523, 535, 659
MboII	GAAGA	3 cut(s)	371, 669, 678
MhlI	GDGCHC	2 cut(s)	55, 560
MlyI	GAGTC	2 cut(s)	307, 344
MnlI	CCTC	9 cut(s)	99, 123, 265, 420, 429, 500, 579, 605, 666
MseI	TTAA	1 cut(s)	378
MspA1I	CMGCKG	2 cut(s)	552, 717
MspI	CCGG	1 cut(s)	698
MspR9I	CCNGG	6 cut(s)	61, 67, 174, 198, 462, 698
MvaI	CCWGG	5 cut(s)	61, 67, 174, 198, 462
MvnI	CGCG	3 cut(s)	552, 621, 717
MwoI	GCNNNNNNNGC	1 cut(s)	124
NciI	CCSGG	1 cut(s)	698
NcoI	CCATGG	1 cut(s)	44
NdeI	CATATG	1 cut(s)	688
NdeII	GATC	8 cut(s)	32, 92, 104, 155, 511, 523, 535, 659
NlaIII	CATG	3 cut(s)	48, 111, 291
NlaIV	GGNNCC	3 cut(s)	306, 548, 721
NmuCI	GTSAC	2 cut(s)	214, 588
PceI	AGGCCT	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	2 cut(s)	322, 439
PfeI	GAWTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	461
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	6 cut(s)	187, 374, 620, 641, 695, 719
PleI	GAGTC	2 cut(s)	307, 344
PpsI	GAGTC	2 cut(s)	307, 344
Psp124BI	GAGCTC	1 cut(s)	55
Psp6I	CCWGG	5 cut(s)	59, 65, 172, 196, 460
PspEI	GGTNACC	1 cut(s)	588
PspGI	CCWGG	5 cut(s)	59, 65, 172, 196, 460
PspN4I	GGNNCC	3 cut(s)	306, 548, 721
PspPI	GGNCC	2 cut(s)	63, 162
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
SacI	GAGCTC	1 cut(s)	55
SacII	CCGCGG	2 cut(s)	553, 718
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	6 cut(s)	186, 373, 619, 640, 694, 718
Sau3AI	GATC	8 cut(s)	32, 92, 104, 155, 511, 523, 535, 659
Sau96I	GGNCC	2 cut(s)	63, 162
SchI	GAGTC	2 cut(s)	307, 344
ScrFI	CCNGG	6 cut(s)	61, 67, 174, 198, 462, 698
SduI	GDGCHC	2 cut(s)	55, 560
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	607
Sfr303I	CCGCGG	2 cut(s)	553, 718
SgrBI	CCGCGG	2 cut(s)	553, 718
SinI	GGWCC	2 cut(s)	63, 162
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	8 cut(s)	5, 550, 552, 619, 639, 654, 715, 717
SspMI	CTAG	7 cut(s)	72, 84, 114, 141, 309, 489, 633
SstI	GAGCTC	1 cut(s)	55
StuI	AGGCCT	1 cut(s)	88
StyD4I	CCNGG	6 cut(s)	59, 65, 172, 196, 460, 696
StyI	CCWWGG	5 cut(s)	44, 122, 308, 593, 632
TaaI	ACNGT	2 cut(s)	210, 421
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	5 cut(s)	31, 91, 101, 409, 520
TaqII	GACCGA	1 cut(s)	519
TauI	GCSGC	3 cut(s)	621, 642, 720
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	2 cut(s)	214, 588
TseI	GCWGC	3 cut(s)	185, 372, 693
Tsp45I	GTSAC	2 cut(s)	214, 588
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	213
Van91I	CCANNNNNTGG	1 cut(s)	461
VpaK11BI	GGWCC	2 cut(s)	63, 162
XbaI	TCTAGA	1 cut(s)	140
XmaJI	CCTAGG	2 cut(s)	308, 632
XspI	CTAG	7 cut(s)	72, 84, 114, 141, 309, 489, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.