RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 100 |
| AcsI | RAATTY | 1 cut(s) | 230 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 95, 154 |
| AjnI | CCWGG | 1 cut(s) | 169 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 10, 42 |
| Alw26I | GTCTC | 1 cut(s) | 88 |
| AoxI | GGCC | 2 cut(s) | 29, 97 |
| ApoI | RAATTY | 1 cut(s) | 230 |
| AsuHPI | GGTGA | 2 cut(s) | 60, 78 |
| BanII | GRGCYC | 1 cut(s) | 149 |
| BauI | CACGAG | 1 cut(s) | 46 |
| BccI | CCATC | 1 cut(s) | 157 |
| BciT130I | CCWGG | 1 cut(s) | 171 |
| BcoDI | GTCTC | 1 cut(s) | 88 |
| BfaI | CTAG | 2 cut(s) | 126, 141 |
| BisI | GCNGC | 1 cut(s) | 100 |
| BlsI | GCNGC | 1 cut(s) | 101 |
| Bme1390I | CCNGG | 1 cut(s) | 171 |
| BmiI | GGNNCC | 1 cut(s) | 146 |
| BmrFI | CCNGG | 1 cut(s) | 171 |
| BmsI | GCATC | 1 cut(s) | 148 |
| BoxI | GACNNNNGTC | 1 cut(s) | 80 |
| BsaBI | GATNNNNATC | 1 cut(s) | 109 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 95, 154 |
| Bse8I | GATNNNNATC | 1 cut(s) | 109 |
| BseBI | CCWGG | 1 cut(s) | 171 |
| BseGI | GGATG | 1 cut(s) | 163 |
| BseJI | GATNNNNATC | 1 cut(s) | 109 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 95, 154 |
| Bsh1285I | CGRYCG | 1 cut(s) | 107 |
| BshFI | GGCC | 2 cut(s) | 31, 99 |
| BsiEI | CGRYCG | 1 cut(s) | 107 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 95, 154 |
| BsmAI | GTCTC | 1 cut(s) | 88 |
| BsnI | GGCC | 2 cut(s) | 31, 99 |
| Bsp1286I | GDGCHC | 1 cut(s) | 149 |
| Bsp143I | GATC | 2 cut(s) | 104, 110 |
| BspACI | CCGC | 1 cut(s) | 100 |
| BspANI | GGCC | 2 cut(s) | 31, 99 |
| BspLI | GGNNCC | 1 cut(s) | 146 |
| BssMI | GATC | 2 cut(s) | 104, 110 |
| BssSI | CACGAG | 1 cut(s) | 46 |
| Bst2BI | CACGAG | 1 cut(s) | 46 |
| Bst2UI | CCWGG | 1 cut(s) | 171 |
| BstEII | GGTNACC | 2 cut(s) | 4, 208 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 93 |
| BstF5I | GGATG | 1 cut(s) | 163 |
| BstKTI | GATC | 2 cut(s) | 107, 113 |
| BstMAI | GTCTC | 1 cut(s) | 88 |
| BstMBI | GATC | 2 cut(s) | 104, 110 |
| BstMCI | CGRYCG | 1 cut(s) | 107 |
| BstNI | CCWGG | 1 cut(s) | 171 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 80 |
| BstPI | GGTNACC | 2 cut(s) | 4, 208 |
| BstSCI | CCNGG | 1 cut(s) | 169 |
| BsuRI | GGCC | 2 cut(s) | 31, 99 |
| BtsCI | GGATG | 1 cut(s) | 163 |
| CviJI | RGCY | 4 cut(s) | 31, 99, 147, 195 |
| CviKI_1 | RGCY | 4 cut(s) | 31, 99, 147, 195 |
| DpnI | GATC | 2 cut(s) | 106, 112 |
| DpnII | GATC | 2 cut(s) | 104, 110 |
| Eco24I | GRGCYC | 1 cut(s) | 149 |
| Eco91I | GGTNACC | 2 cut(s) | 4, 208 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 93 |
| EcoO65I | GGTNACC | 2 cut(s) | 4, 208 |
| EcoRII | CCWGG | 1 cut(s) | 169 |
| EcoT38I | GRGCYC | 1 cut(s) | 149 |
| FaiI | YATR | 4 cut(s) | 35, 37, 43, 186 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 49, 81 |
| Fnu4HI | GCNGC | 1 cut(s) | 100 |
| FokI | GGATG | 1 cut(s) | 170 |
| FriOI | GRGCYC | 1 cut(s) | 149 |
| Fsp4HI | GCNGC | 1 cut(s) | 100 |
| FspBI | CTAG | 2 cut(s) | 126, 141 |
| GluI | GCNGC | 1 cut(s) | 100 |
| HaeIII | GGCC | 2 cut(s) | 31, 99 |
| HinfI | GANTC | 1 cut(s) | 133 |
| HphI | GGTGA | 2 cut(s) | 60, 78 |
| Hpy188III | TCNNGA | 2 cut(s) | 108, 126 |
| HpyAV | CCTTC | 2 cut(s) | 123, 239 |
| HpyCH4V | TGCA | 1 cut(s) | 161 |
| Kzo9I | GATC | 2 cut(s) | 104, 110 |
| LmnI | GCTCC | 1 cut(s) | 144 |
| LpnPI | CCDG | 4 cut(s) | 102, 156, 177, 183 |
| LweI | GCATC | 1 cut(s) | 148 |
| MaeI | CTAG | 2 cut(s) | 126, 141 |
| MaeIII | GTNAC | 3 cut(s) | 4, 187, 208 |
| MalI | GATC | 2 cut(s) | 106, 112 |
| MboI | GATC | 2 cut(s) | 104, 110 |
| MhlI | GDGCHC | 1 cut(s) | 149 |
| MluCI | AATT | 1 cut(s) | 230 |
| MlyI | GAGTC | 1 cut(s) | 142 |
| MnlI | CCTC | 3 cut(s) | 88, 114, 223 |
| MseI | TTAA | 1 cut(s) | 237 |
| MspR9I | CCNGG | 1 cut(s) | 171 |
| MvaI | CCWGG | 1 cut(s) | 171 |
| NdeII | GATC | 2 cut(s) | 104, 110 |
| NlaIV | GGNNCC | 1 cut(s) | 146 |
| PfoI | TCCNGGA | 1 cut(s) | 169 |
| PkrI | GCNGC | 1 cut(s) | 101 |
| Ple19I | CGATCG | 1 cut(s) | 107 |
| PleI | GAGTC | 1 cut(s) | 141 |
| PpsI | GAGTC | 1 cut(s) | 141 |
| PshAI | GACNNNNGTC | 1 cut(s) | 80 |
| Psp6I | CCWGG | 1 cut(s) | 169 |
| PspEI | GGTNACC | 2 cut(s) | 4, 208 |
| PspGI | CCWGG | 1 cut(s) | 169 |
| PspN4I | GGNNCC | 1 cut(s) | 146 |
| PvuI | CGATCG | 1 cut(s) | 107 |
| SaqAI | TTAA | 1 cut(s) | 237 |
| SatI | GCNGC | 1 cut(s) | 100 |
| Sau3AI | GATC | 2 cut(s) | 104, 110 |
| SchI | GAGTC | 1 cut(s) | 142 |
| ScrFI | CCNGG | 1 cut(s) | 171 |
| SduI | GDGCHC | 1 cut(s) | 149 |
| SetI | ASST | 6 cut(s) | 62, 80, 91, 125, 215, 255 |
| SfaNI | GCATC | 1 cut(s) | 148 |
| Sse9I | AATT | 1 cut(s) | 230 |
| SsiI | CCGC | 1 cut(s) | 100 |
| SspMI | CTAG | 2 cut(s) | 126, 141 |
| StyD4I | CCNGG | 1 cut(s) | 169 |
| TaqI | TCGA | 2 cut(s) | 107, 119 |
| TasI | AATT | 1 cut(s) | 230 |
| TauI | GCSGC | 1 cut(s) | 102 |
| Tru1I | TTAA | 1 cut(s) | 237 |
| Tru9I | TTAA | 1 cut(s) | 237 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 93 |
| XapI | RAATTY | 1 cut(s) | 230 |
| XbaI | TCTAGA | 1 cut(s) | 125 |
| XspI | CTAG | 2 cut(s) | 126, 141 |