Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

2685534 .. 2686857

Gene Structure 1324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0037800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAAAGAGAGGCTAACAACAACACTAATCATACCCGCGACGCCTCGTTTTCTTCTTACCTCACCAGAGCAGAAGGGAACTTGGTGCTCAAGTCTCCTGCCTTGAACTTGAGCCAAAAGACCGATCAGGAGGGCGAAATCAGTGTATTCGGCGCTGAAAGATATTTCAGCATGATGCTGGAAGATGACAGTCCAAGAGTACTTGTGGACTATAACAACACCACCAGAGCTGGTCTGCAGCGACAGAAGCAACCAAAGACTAGTAGGCCAGGAACTCCTAGTACTTGTTCTAATGCAAGCTGGAACATTCAAACCGCTTTCTTGCCTTCTCGGAGAAGAAACCAGTCTCAGAACAAGAAGAAAAAGGTGAATGGAAAGAAGATATTTTCCGGTTTTGGCTGCAATGGTTCTTGTTCAGATCAGAAATCCATTCATGTTCATGAGGTTAATGTACGTGTTGCTAGAGATTTCAGGAAACTAAGTTTTGGAAGTGATCACCATCCTGTCAAGCAGTCTCCACCAAGAATTAAGGCCAAAGATCACGAGCTTCTTCACCGCTACCCTAGCTTTGGAGGATCAAACAAAAAACAACATTTTCAGTTTACAAATTTTGGAGCTAAAGAAGAGAAGAAGGCAAAACTAGAAGAAGAAGAGCCGCCACAAAAATCGCTGGAAGTGTTTGGATCCGAAATGAAGAAGGAAGGAGAAGACTTAGTGGCAATAAATCTAGAGAGGAGACTTTCCATGTTATCTTGGGATGCCATTCCAAAAGCTCAAAGCCACTCAATTACTACTGGAAATAGTGAAATGATCAATGAAGATATTGAGAGTGATGCTAGTTCTGATTTGTTTGAGATTGAGAACTTAACCGGCACCGGTCAGCCATTAATGTTCACAAAGCAAGCATCTGATGGATTGTCCATGGCTTCCCCCACCAAGTATGACTCAAGTGAGACCAGCATTGACTGTAGTGTTGTCACAGCTAATTTTGTCTCAGCTGCAGTTTCAGATTACGATGAGAAGAAATTAGTGCCGGCCAACCAACTGCAACATCAAAGCCTGAATTCTTCAATGGAAGTAGGCAAAGTTACAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

365

Amino Acids

40.7

Weight (kDa)

7.7

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	872
AccII	CGCG	1 cut(s)	39
AciI	CCGC	4 cut(s)	37, 315, 556, 656
AclWI	GGATC	3 cut(s)	583, 678, 691
AcoI	YGGCCR	1 cut(s)	1035
AcsI	RAATTY	2 cut(s)	607, 1063
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	3 cut(s)	201, 283, 453
AfiI	CCNNNNNNNGG	1 cut(s)	569
AflIII	ACRYGT	1 cut(s)	454
AgeI	ACCGGT	1 cut(s)	875
AgsI	TTSAA	3 cut(s)	106, 311, 1071
AhlI	ACTAGT	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	8 cut(s)	230, 300, 547, 567, 617, 773, 983, 998
AluI	AGCT	8 cut(s)	230, 300, 547, 567, 617, 773, 983, 998
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	6 cut(s)	99, 351, 519, 730, 947, 997
AlwI	GGATC	3 cut(s)	583, 678, 691
AoxI	GGCC	3 cut(s)	266, 531, 1035
ApeKI	GCWGC	3 cut(s)	238, 399, 998
ApoI	RAATTY	2 cut(s)	607, 1063
AseI	ATTAAT	1 cut(s)	887
AsiGI	ACCGGT	1 cut(s)	875
AspLEI	GCGC	1 cut(s)	155
AsuHPI	GGTGA	4 cut(s)	55, 379, 488, 545
BamHI	GGATCC	1 cut(s)	683
BanI	GGYRCC	1 cut(s)	872
BauI	CACGAG	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	714
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	3 cut(s)	250, 386, 985
BccI	CCATC	2 cut(s)	507, 905
BciT130I	CCWGG	1 cut(s)	270
BclI	TGATCA	2 cut(s)	493, 810
BcoDI	GTCTC	6 cut(s)	99, 351, 519, 730, 947, 997
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	7 cut(s)	261, 279, 462, 564, 641, 728, 837
BfmI	CTRYAG	3 cut(s)	236, 967, 999
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	4 cut(s)	239, 400, 656, 999
BlsI	GCNGC	4 cut(s)	240, 401, 657, 1000
BmcAI	AGTACT	2 cut(s)	201, 283
Bme1390I	CCNGG	1 cut(s)	270
BmiI	GGNNCC	2 cut(s)	685, 874
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	4 cut(s)	165, 748, 823, 914
BpiI	GAAGAC	1 cut(s)	714
BpuEI	CTTGAG	3 cut(s)	74, 130, 931
BsaAI	YACGTR	1 cut(s)	455
BsaBI	GATNNNNATC	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	947
BsaJI	CCNNGG	1 cut(s)	921
BsaWI	WCCGGW	2 cut(s)	389, 875
Bsc4I	CCNNNNNNNGG	1 cut(s)	569
Bse118I	RCCGGY	3 cut(s)	869, 875, 1033
Bse1I	ACTGG	2 cut(s)	343, 799
Bse3DI	GCAATG	1 cut(s)	409
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	921
BseGI	GGATG	2 cut(s)	499, 763
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	1 cut(s)	569
BseMI	GCAATG	1 cut(s)	409
BseMII	CTCAG	2 cut(s)	362, 1008
BseNI	ACTGG	2 cut(s)	343, 799
BseRI	GAGGAG	1 cut(s)	748
BseXI	GCAGC	3 cut(s)	250, 386, 985
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	3 cut(s)	268, 533, 1037
BshNI	GGYRCC	1 cut(s)	872
BshTI	ACCGGT	1 cut(s)	875
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	4 cut(s)	390, 870, 876, 1034
BslI	CCNNNNNNNGG	1 cut(s)	569
BsmAI	GTCTC	6 cut(s)	99, 351, 519, 730, 947, 997
BsnI	GGCC	3 cut(s)	268, 533, 1037
Bso31I	GGTCTC	1 cut(s)	947
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	7 cut(s)	124, 418, 493, 538, 575, 683, 810
Bsp19I	CCATGG	1 cut(s)	921
BspACI	CCGC	4 cut(s)	37, 315, 556, 656
BspANI	GGCC	3 cut(s)	268, 533, 1037
BspCNI	CTCAG	2 cut(s)	361, 1007
BspFNI	CGCG	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	2 cut(s)	685, 874
BspMAI	CTGCAG	2 cut(s)	240, 1003
BspPI	GGATC	3 cut(s)	583, 678, 691
BspQI	GCTCTTC	1 cut(s)	645
BspT107I	GGYRCC	1 cut(s)	872
BspTNI	GGTCTC	1 cut(s)	947
BsrDI	GCAATG	1 cut(s)	409
BsrFI	RCCGGY	3 cut(s)	869, 875, 1033
BsrI	ACTGG	2 cut(s)	343, 799
BssAI	RCCGGY	3 cut(s)	869, 875, 1033
BssECI	CCNNGG	1 cut(s)	921
BssMI	GATC	7 cut(s)	124, 418, 493, 538, 575, 683, 810
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	542
BssT1I	CCWWGG	1 cut(s)	921
Bst2BI	CACGAG	1 cut(s)	542
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	191, 968
Bst6I	CTCTTC	2 cut(s)	618, 645
BstACI	GRCGYC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	455
BstC8I	GCNNGC	3 cut(s)	298, 903, 1035
BstDEI	CTNAG	4 cut(s)	348, 479, 712, 994
BstDSI	CCRYGG	1 cut(s)	921
BstF5I	GGATG	2 cut(s)	499, 763
BstFNI	CGCG	1 cut(s)	39
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	7 cut(s)	127, 421, 496, 541, 578, 686, 813
BstMAI	GTCTC	6 cut(s)	99, 351, 519, 730, 947, 997
BstMBI	GATC	7 cut(s)	124, 418, 493, 538, 575, 683, 810
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 564
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	3 cut(s)	236, 967, 999
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	3 cut(s)	250, 386, 985
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	683
BsuRI	GGCC	3 cut(s)	268, 533, 1037
BtgI	CCRYGG	1 cut(s)	921
BtsCI	GGATG	2 cut(s)	499, 763
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	3 cut(s)	298, 903, 1035
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	3 cut(s)	869, 875, 1033
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	3 cut(s)	200, 282, 452
CspAI	ACCGGT	1 cut(s)	875
CviAII	CATG	5 cut(s)	172, 434, 440, 745, 922
CviQI	GTAC	3 cut(s)	200, 282, 452
DdeI	CTNAG	4 cut(s)	348, 479, 712, 994
DpnI	GATC	7 cut(s)	126, 420, 495, 540, 577, 685, 812
DpnII	GATC	7 cut(s)	124, 418, 493, 538, 575, 683, 810
EaeI	YGGCCR	1 cut(s)	1035
Eam1104I	CTCTTC	2 cut(s)	618, 645
EarI	CTCTTC	2 cut(s)	618, 645
Eco130I	CCWWGG	1 cut(s)	921
Eco31I	GGTCTC	1 cut(s)	947
EcoRI	GAATTC	1 cut(s)	1063
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	921
ErhI	CCWWGG	1 cut(s)	921
FaeI	CATG	5 cut(s)	175, 437, 443, 748, 925
FaiI	YATR	8 cut(s)	33, 173, 213, 435, 441, 746, 923, 942
FatI	CATG	5 cut(s)	171, 433, 439, 744, 921
FauI	CCCGC	1 cut(s)	44
FbaI	TGATCA	2 cut(s)	493, 810
Fnu4HI	GCNGC	4 cut(s)	239, 400, 656, 999
FokI	GGATG	2 cut(s)	486, 770
Fsp4HI	GCNGC	4 cut(s)	239, 400, 656, 999
FspBI	CTAG	7 cut(s)	261, 279, 462, 564, 641, 728, 837
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	4 cut(s)	239, 400, 656, 999
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	3 cut(s)	268, 533, 1037
HapII	CCGG	4 cut(s)	390, 870, 876, 1034
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	5 cut(s)	175, 437, 443, 748, 925
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	944
HpaII	CCGG	4 cut(s)	390, 870, 876, 1034
HphI	GGTGA	4 cut(s)	55, 379, 488, 545
Hpy166II	GTNNAC	3 cut(s)	208, 603, 894
Hpy188I	TCNGA	9 cut(s)	333, 351, 418, 423, 688, 844, 910, 1009, 1097
Hpy188III	TCNNGA	5 cut(s)	128, 440, 472, 542, 728
Hpy8I	GTNNAC	3 cut(s)	208, 603, 894
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	5 cut(s)	68, 336, 625, 691, 695
HpyCH4III	ACNGT	2 cut(s)	191, 968
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	5 cut(s)	238, 296, 402, 1001, 1048
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 564
HpyF3I	CTNAG	4 cut(s)	348, 479, 712, 994
HpySE526I	ACGT	1 cut(s)	454
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	5 cut(s)	175, 437, 443, 748, 925
HspAI	GCGC	1 cut(s)	153
KroI	GCCGGC	1 cut(s)	1033
KroNI	GCCGGC	1 cut(s)	1035
Ksp22I	TGATCA	2 cut(s)	493, 810
Kzo9I	GATC	7 cut(s)	124, 418, 493, 538, 575, 683, 810
LguI	GCTCTTC	1 cut(s)	645
LmnI	GCTCC	1 cut(s)	614
Lsp1109I	GCAGC	3 cut(s)	250, 386, 985
LweI	GCATC	4 cut(s)	165, 748, 823, 914
MaeI	CTAG	7 cut(s)	261, 279, 462, 564, 641, 728, 837
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	2 cut(s)	976, 1087
MalI	GATC	7 cut(s)	126, 420, 495, 540, 577, 685, 812
MboI	GATC	7 cut(s)	124, 418, 493, 538, 575, 683, 810
MflI	RGATCY	1 cut(s)	683
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	6 cut(s)	525, 607, 786, 985, 1025, 1063
MlyI	GAGTC	1 cut(s)	938
MnlI	CCTC	7 cut(s)	4, 55, 71, 124, 436, 566, 726
MroNI	GCCGGC	1 cut(s)	1033
MseI	TTAA	4 cut(s)	447, 528, 866, 887
MslI	CAYNNNNRTG	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	998
MspI	CCGG	4 cut(s)	390, 870, 876, 1034
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	247, 564
NaeI	GCCGGC	1 cut(s)	1035
NcoI	CCATGG	1 cut(s)	921
NdeII	GATC	7 cut(s)	124, 418, 493, 538, 575, 683, 810
NgoMIV	GCCGGC	1 cut(s)	1033
NlaIII	CATG	5 cut(s)	175, 437, 443, 748, 925
NlaIV	GGNNCC	2 cut(s)	685, 874
NmuCI	GTSAC	1 cut(s)	976
PagI	TCATGA	1 cut(s)	439
PciSI	GCTCTTC	1 cut(s)	645
PdiI	GCCGGC	1 cut(s)	1035
PinAI	ACCGGT	1 cut(s)	875
PkrI	GCNGC	4 cut(s)	240, 401, 657, 1000
PleI	GAGTC	1 cut(s)	938
PpsI	GAGTC	1 cut(s)	938
Ppu21I	YACGTR	1 cut(s)	455
PshBI	ATTAAT	1 cut(s)	887
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	685, 874
PsrI	GAACNNNNNNTAC	2 cut(s)	265, 297
PstI	CTGCAG	2 cut(s)	240, 1003
PsuI	RGATCY	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	998
RsaI	GTAC	3 cut(s)	201, 283, 453
RsaNI	GTAC	3 cut(s)	200, 282, 452
RseI	CAYNNNNRTG	1 cut(s)	438
SapI	GCTCTTC	1 cut(s)	645
SaqAI	TTAA	4 cut(s)	447, 528, 866, 887
SatI	GCNGC	4 cut(s)	239, 400, 656, 999
Sau3AI	GATC	7 cut(s)	124, 418, 493, 538, 575, 683, 810
ScaI	AGTACT	2 cut(s)	201, 283
SchI	GAGTC	1 cut(s)	938
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	4 cut(s)	165, 748, 823, 914
SfcI	CTRYAG	3 cut(s)	236, 967, 999
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	3 cut(s)	89, 109, 946
SmoI	CTYRAG	3 cut(s)	89, 109, 946
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	6 cut(s)	525, 607, 786, 985, 1025, 1063
SsiI	CCGC	4 cut(s)	37, 315, 556, 656
SspMI	CTAG	7 cut(s)	261, 279, 462, 564, 641, 728, 837
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	921
TaaI	ACNGT	2 cut(s)	191, 968
TaiI	ACGT	1 cut(s)	457
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	6 cut(s)	525, 607, 786, 985, 1025, 1063
TatI	WGTACW	2 cut(s)	199, 281
TauI	GCSGC	1 cut(s)	658
Tru1I	TTAA	4 cut(s)	447, 528, 866, 887
Tru9I	TTAA	4 cut(s)	447, 528, 866, 887
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	976
TseI	GCWGC	3 cut(s)	238, 399, 998
Tsp45I	GTSAC	1 cut(s)	976
TspDTI	ATGAA	4 cut(s)	422, 428, 707, 831
TspRI	CASTG	1 cut(s)	148
VspI	ATTAAT	1 cut(s)	887
XapI	RAATTY	2 cut(s)	607, 1063
XbaI	TCTAGA	1 cut(s)	727
XspI	CTAG	7 cut(s)	261, 279, 462, 564, 641, 728, 837
ZrmI	AGTACT	2 cut(s)	201, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.