Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

55249904 .. 55252616

Gene Structure 2713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGTTACCAAAAACAGAACTTTCACTTGGCCTATATGGTCATACACGAGAGCAAAAAGGTCTGCTTCACCACAGACCTCTGTCTCACCTGTCAAAGGCCGCCGATCGAGATCATTGTCGAGGTCTAGAAGGAGTCGTTCTAGGAGCCCATCTGTGGATGCAACCAATCCTGGAAACAACTTGTATGTAACAGGCTTATCCACAAGGGTTACCTCTGCTGATGTTGAGAAATTCTTTAACAAAGAAGGCAAGGTGTTGGAGTGCCATCTTGTAACTGACCCTCGCTCCAGAGAATCTCGTGGATTTGCATTTGTCACAATGGAAACTGTAGAGGATGCAGAGCGATGCATTAAGTACTTGAATCGTTCTGTGCTTGAAGGTCGACTAGTCACTGTGGAAAAGAAGAAGAGGTGGAGAAGAAGACCCAGCAGCAACAATAACCACACCAACAAGGAGAACAGAAGTTGGAGAAACTTCATGAAGAGGATCTTGTTGAAAGGCCGTTCAAGAAGAAACAGATCAAGATCAGGTTTCCTGAATGGGGAAGAAGTGGGAGATTTGCTCCATTTGGAGGTAAGGTGGGTTTACATATTTTGTTCACAAGTAAAAGTGCTACAAGCCATTTTTTTTTCACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

212

Amino Acids

24.73

Weight (kDa)

11.36

Isoelectric Point (pI)

82.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	61 - 130	8.5e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	382
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	494
AcsI	RAATTY	1 cut(s)	230
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	4 cut(s)	95, 154, 541, 571
AgsI	TTSAA	4 cut(s)	361, 377, 496, 507
AhlI	ACTAGT	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	2 cut(s)	10, 42
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	494
AoxI	GGCC	3 cut(s)	29, 97, 499
ApeKI	GCWGC	1 cut(s)	429
ApoI	RAATTY	1 cut(s)	230
AsuHPI	GGTGA	3 cut(s)	60, 78, 624
BanII	GRGCYC	1 cut(s)	149
BauI	CACGAG	2 cut(s)	46, 297
BbsI	GAAGAC	1 cut(s)	427
BbvI	GCAGC	1 cut(s)	441
BccI	CCATC	2 cut(s)	157, 273
BceAI	ACGGC	1 cut(s)	486
BciT130I	CCWGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	88
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	3 cut(s)	126, 141, 386
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	2 cut(s)	100, 430
BlsI	GCNGC	2 cut(s)	101, 431
BmcAI	AGTACT	1 cut(s)	356
Bme1390I	CCNGG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	3 cut(s)	148, 325, 335
BoxI	GACNNNNGTC	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	427
BplI	GAGNNNNNCTC	2 cut(s)	546, 578
BpmI	CTGGAG	1 cut(s)	271
BsaBI	GATNNNNATC	2 cut(s)	109, 523
BsaXI	ACNNNNNCTCC	4 cut(s)	269, 299, 563, 593
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 154, 541, 571
Bse8I	GATNNNNATC	2 cut(s)	109, 523
BseBI	CCWGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	163, 340
BseJI	GATNNNNATC	2 cut(s)	109, 523
BseLI	CCNNNNNNNGG	4 cut(s)	95, 154, 541, 571
BseXI	GCAGC	1 cut(s)	441
BseYI	CCCAGC	1 cut(s)	425
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	3 cut(s)	31, 99, 501
BsiEI	CGRYCG	1 cut(s)	107
BslI	CCNNNNNNNGG	4 cut(s)	95, 154, 541, 571
BsmAI	GTCTC	1 cut(s)	88
BsnI	GGCC	3 cut(s)	31, 99, 501
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	5 cut(s)	104, 110, 486, 518, 524
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	3 cut(s)	31, 99, 501
BspHI	TCATGA	1 cut(s)	477
BspLI	GGNNCC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	494
BssMI	GATC	5 cut(s)	104, 110, 486, 518, 524
BssSI	CACGAG	2 cut(s)	46, 297
Bst2BI	CACGAG	2 cut(s)	46, 297
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	2 cut(s)	328, 394
Bst6I	CTCTTC	2 cut(s)	401, 476
BstEII	GGTNACC	2 cut(s)	4, 208
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	163, 340
BstKTI	GATC	5 cut(s)	107, 113, 489, 521, 527
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	5 cut(s)	104, 110, 486, 518, 524
BstMCI	CGRYCG	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	171
BstPAI	GACNNNNGTC	1 cut(s)	80
BstPI	GGTNACC	2 cut(s)	4, 208
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
BsuRI	GGCC	3 cut(s)	31, 99, 501
BtgZI	GCGATG	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	163, 340
BtsIMutI	CAGTG	1 cut(s)	390
CciI	TCATGA	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	1 cut(s)	478
CviJI	RGCY	6 cut(s)	31, 99, 147, 195, 501, 620
CviKI_1	RGCY	6 cut(s)	31, 99, 147, 195, 501, 620
CviQI	GTAC	1 cut(s)	355
DpnI	GATC	5 cut(s)	106, 112, 488, 520, 526
DpnII	GATC	5 cut(s)	104, 110, 486, 518, 524
Eam1104I	CTCTTC	2 cut(s)	401, 476
EarI	CTCTTC	2 cut(s)	401, 476
Eco24I	GRGCYC	1 cut(s)	149
Eco91I	GGTNACC	2 cut(s)	4, 208
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoO65I	GGTNACC	2 cut(s)	4, 208
EcoRII	CCWGG	1 cut(s)	169
EcoT22I	ATGCAT	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	149
FaeI	CATG	1 cut(s)	481
FaiI	YATR	6 cut(s)	35, 37, 43, 186, 479, 590
FalI	AAGNNNNNCTT	4 cut(s)	49, 81, 473, 505
FatI	CATG	1 cut(s)	477
FblI	GTMKAC	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	100, 430
FokI	GGATG	2 cut(s)	170, 347
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	2 cut(s)	100, 430
FspBI	CTAG	3 cut(s)	126, 141, 386
GluI	GCNGC	2 cut(s)	100, 430
GsaI	CCCAGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	271
HaeIII	GGCC	3 cut(s)	31, 99, 501
Hin1II	CATG	1 cut(s)	481
HincII	GTYRAC	1 cut(s)	383
HindII	GTYRAC	1 cut(s)	383
HinfI	GANTC	3 cut(s)	133, 293, 361
HphI	GGTGA	3 cut(s)	60, 78, 624
Hpy166II	GTNNAC	3 cut(s)	383, 586, 599
Hpy188III	TCNNGA	7 cut(s)	108, 126, 288, 478, 507, 522, 535
Hpy8I	GTNNAC	3 cut(s)	383, 586, 599
HpyAV	CCTTC	3 cut(s)	123, 239, 371
HpyCH4III	ACNGT	2 cut(s)	328, 394
HpyCH4V	TGCA	4 cut(s)	161, 308, 338, 348
Hsp92II	CATG	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	104, 110, 486, 518, 524
LmnI	GCTCC	3 cut(s)	144, 290, 567
LpnPI	CCDG	8 cut(s)	102, 156, 177, 183, 301, 439, 513, 548
Lsp1109I	GCAGC	1 cut(s)	441
LweI	GCATC	3 cut(s)	148, 325, 335
MaeI	CTAG	3 cut(s)	126, 141, 386
MaeIII	GTNAC	6 cut(s)	4, 187, 208, 271, 313, 388
MalI	GATC	5 cut(s)	106, 112, 488, 520, 526
MboI	GATC	5 cut(s)	104, 110, 486, 518, 524
MboII	GAAGA	7 cut(s)	415, 418, 429, 432, 493, 522, 557
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	2 cut(s)	237, 446
MnlI	CCTC	8 cut(s)	88, 114, 223, 291, 325, 402, 477, 565
Mph1103I	ATGCAT	1 cut(s)	350
MseI	TTAA	3 cut(s)	237, 351, 637
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
NdeII	GATC	5 cut(s)	104, 110, 486, 518, 524
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	1 cut(s)	146
NmuCI	GTSAC	2 cut(s)	313, 388
NsiI	ATGCAT	1 cut(s)	350
PagI	TCATGA	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	293, 361
PfoI	TCCNGGA	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	101, 431
Ple19I	CGATCG	1 cut(s)	107
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PshAI	GACNNNNGTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	169
PspEI	GGTNACC	2 cut(s)	4, 208
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	486
PvuI	CGATCG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SalI	GTCGAC	1 cut(s)	381
SaqAI	TTAA	3 cut(s)	237, 351, 637
SatI	GCNGC	2 cut(s)	100, 430
Sau3AI	GATC	5 cut(s)	104, 110, 486, 518, 524
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	149
SfaNI	GCATC	3 cut(s)	148, 325, 335
SfcI	CTRYAG	1 cut(s)	327
SpeI	ACTAGT	1 cut(s)	385
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	3 cut(s)	126, 141, 386
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	328, 394
TaqI	TCGA	3 cut(s)	107, 119, 382
TasI	AATT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	293, 361
Tru1I	TTAA	3 cut(s)	237, 351, 637
Tru9I	TTAA	3 cut(s)	237, 351, 637
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	2 cut(s)	313, 388
TseI	GCWGC	1 cut(s)	429
Tsp45I	GTSAC	2 cut(s)	313, 388
TspDTI	ATGAA	2 cut(s)	466, 494
TspRI	CASTG	1 cut(s)	397
XagI	CCTNNNNNAGG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	230
XbaI	TCTAGA	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	382
XspI	CTAG	3 cut(s)	126, 141, 386
ZrmI	AGTACT	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.