Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

42024213 .. 42025637

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G028060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTTACCAAAAACAGAACTTTCACTTGGCCTATATGGTCATACACGAGAGCAAAAAGGTCTGCTTCACCACAGACCTCTGTCTCACCTGTCAAAGGCCGCCGATCGAGATCATTGTCGAGGTCTAGAAGGAGTCGTTCTAGGAGCCCATCTGTGGATGCAACCAATCCTGGAAACAACTTGTATGTAACAGGCTTATCCACAAGGGTTACCTCTGCTGATGTTGAGAAATTCTTTAACAAAGAAGGCAAGGTGTTGGAGTGCCATCTTGTAACTGACCCTCGCTCCAGAGAATCTCGTGGATTTGCATTTGTCACAATGGAAACTGTAGAGGATGCAGAGCGATGCATTAAGTACTTGAATCGTTCTGTGCTTGAAGGTCGACTAGTCACTGTGGAAAAGGTATCAGTTTCTGTCAAAGGATCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

143

Amino Acids

16.15

Weight (kDa)

10.89

Isoelectric Point (pI)

68.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	61 - 130	3.5e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	382
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	430
AcsI	RAATTY	1 cut(s)	230
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	2 cut(s)	95, 154
AgsI	TTSAA	2 cut(s)	361, 377
AhlI	ACTAGT	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	2 cut(s)	10, 42
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	430
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	2 cut(s)	29, 97
ApoI	RAATTY	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	60, 78
BanII	GRGCYC	1 cut(s)	149
BauI	CACGAG	2 cut(s)	46, 297
BccI	CCATC	2 cut(s)	157, 273
BciT130I	CCWGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	88
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	3 cut(s)	126, 141, 386
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
BmcAI	AGTACT	1 cut(s)	356
Bme1390I	CCNGG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	3 cut(s)	148, 325, 335
BoxI	GACNNNNGTC	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 154
Bse8I	GATNNNNATC	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	163, 340
BseJI	GATNNNNATC	1 cut(s)	109
BseLI	CCNNNNNNNGG	2 cut(s)	95, 154
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	31, 99
BsiEI	CGRYCG	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	95, 154
BsmAI	GTCTC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	31, 99
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	104, 110, 422
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	2 cut(s)	31, 99
BspLI	GGNNCC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	430
BssMI	GATC	3 cut(s)	104, 110, 422
BssSI	CACGAG	2 cut(s)	46, 297
Bst2BI	CACGAG	2 cut(s)	46, 297
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	2 cut(s)	328, 394
BstEII	GGTNACC	2 cut(s)	4, 208
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	163, 340
BstKTI	GATC	3 cut(s)	107, 113, 425
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	104, 110, 422
BstMCI	CGRYCG	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	171
BstPAI	GACNNNNGTC	1 cut(s)	80
BstPI	GGTNACC	2 cut(s)	4, 208
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	31, 99
BtgZI	GCGATG	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	163, 340
BtsIMutI	CAGTG	1 cut(s)	390
CaiI	CAGNNNCTG	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	355
CviJI	RGCY	4 cut(s)	31, 99, 147, 195
CviKI_1	RGCY	4 cut(s)	31, 99, 147, 195
CviQI	GTAC	1 cut(s)	355
DpnI	GATC	3 cut(s)	106, 112, 424
DpnII	GATC	3 cut(s)	104, 110, 422
Eco24I	GRGCYC	1 cut(s)	149
Eco91I	GGTNACC	2 cut(s)	4, 208
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoO65I	GGTNACC	2 cut(s)	4, 208
EcoRII	CCWGG	1 cut(s)	169
EcoT22I	ATGCAT	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	149
FaiI	YATR	4 cut(s)	35, 37, 43, 186
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FblI	GTMKAC	1 cut(s)	382
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	2 cut(s)	170, 347
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	100
FspBI	CTAG	3 cut(s)	126, 141, 386
GluI	GCNGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	271
HaeIII	GGCC	2 cut(s)	31, 99
HincII	GTYRAC	1 cut(s)	383
HindII	GTYRAC	1 cut(s)	383
HinfI	GANTC	3 cut(s)	133, 293, 361
HphI	GGTGA	2 cut(s)	60, 78
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188III	TCNNGA	4 cut(s)	108, 126, 288, 426
Hpy8I	GTNNAC	1 cut(s)	383
HpyAV	CCTTC	3 cut(s)	123, 239, 371
HpyCH4III	ACNGT	2 cut(s)	328, 394
HpyCH4V	TGCA	4 cut(s)	161, 308, 338, 348
Kzo9I	GATC	3 cut(s)	104, 110, 422
LmnI	GCTCC	2 cut(s)	144, 290
LpnPI	CCDG	5 cut(s)	102, 156, 177, 183, 301
LweI	GCATC	3 cut(s)	148, 325, 335
MaeI	CTAG	3 cut(s)	126, 141, 386
MaeIII	GTNAC	6 cut(s)	4, 187, 208, 271, 313, 388
MalI	GATC	3 cut(s)	106, 112, 424
MboI	GATC	3 cut(s)	104, 110, 422
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	5 cut(s)	88, 114, 223, 291, 325
Mph1103I	ATGCAT	1 cut(s)	350
MseI	TTAA	2 cut(s)	237, 351
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
NdeII	GATC	3 cut(s)	104, 110, 422
NlaIV	GGNNCC	1 cut(s)	146
NmuCI	GTSAC	2 cut(s)	313, 388
NsiI	ATGCAT	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	293, 361
PfoI	TCCNGGA	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	101
Ple19I	CGATCG	1 cut(s)	107
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PshAI	GACNNNNGTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	169
PspEI	GGTNACC	2 cut(s)	4, 208
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	413
PvuI	CGATCG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SalI	GTCGAC	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	237, 351
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	3 cut(s)	104, 110, 422
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	8 cut(s)	62, 80, 91, 125, 215, 255, 382, 405
SfaNI	GCATC	3 cut(s)	148, 325, 335
SfcI	CTRYAG	1 cut(s)	327
SpeI	ACTAGT	1 cut(s)	385
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	3 cut(s)	126, 141, 386
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	328, 394
TaqI	TCGA	3 cut(s)	107, 119, 382
TasI	AATT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	293, 361
Tru1I	TTAA	2 cut(s)	237, 351
Tru9I	TTAA	2 cut(s)	237, 351
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	2 cut(s)	313, 388
Tsp45I	GTSAC	2 cut(s)	313, 388
TspRI	CASTG	1 cut(s)	397
XagI	CCTNNNNNAGG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	230
XbaI	TCTAGA	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	382
XspI	CTAG	3 cut(s)	126, 141, 386
ZrmI	AGTACT	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.