RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 178 |
| AclWI | GGATC | 1 cut(s) | 226 |
| AfaI | GTAC | 1 cut(s) | 152 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 59 |
| AgsI | TTSAA | 2 cut(s) | 157, 173 |
| AhlI | ACTAGT | 1 cut(s) | 181 |
| Alw26I | GTCTC | 1 cut(s) | 52 |
| AlwI | GGATC | 1 cut(s) | 226 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 209 |
| AoxI | GGCC | 1 cut(s) | 61 |
| AsuHPI | GGTGA | 2 cut(s) | 24, 42 |
| BauI | CACGAG | 2 cut(s) | 10, 93 |
| BcoDI | GTCTC | 1 cut(s) | 52 |
| BcuI | ACTAGT | 1 cut(s) | 181 |
| BfaI | CTAG | 1 cut(s) | 182 |
| BfmI | CTRYAG | 1 cut(s) | 123 |
| BmcAI | AGTACT | 1 cut(s) | 152 |
| BmsI | GCATC | 2 cut(s) | 121, 131 |
| BoxI | GACNNNNGTC | 1 cut(s) | 44 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 76, 108 |
| BsaBI | GATNNNNATC | 1 cut(s) | 73 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 59 |
| Bse8I | GATNNNNATC | 1 cut(s) | 73 |
| BseGI | GGATG | 1 cut(s) | 136 |
| BseJI | GATNNNNATC | 1 cut(s) | 73 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 59 |
| Bsh1285I | CGRYCG | 1 cut(s) | 71 |
| BshFI | GGCC | 1 cut(s) | 63 |
| BsiEI | CGRYCG | 1 cut(s) | 71 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 59 |
| BsmAI | GTCTC | 1 cut(s) | 52 |
| BsnI | GGCC | 1 cut(s) | 63 |
| Bsp143I | GATC | 3 cut(s) | 68, 74, 218 |
| BspANI | GGCC | 1 cut(s) | 63 |
| BspPI | GGATC | 1 cut(s) | 226 |
| BssMI | GATC | 3 cut(s) | 68, 74, 218 |
| BssSI | CACGAG | 2 cut(s) | 10, 93 |
| Bst2BI | CACGAG | 2 cut(s) | 10, 93 |
| Bst4CI | ACNGT | 2 cut(s) | 124, 190 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 57 |
| BstF5I | GGATG | 1 cut(s) | 136 |
| BstKTI | GATC | 3 cut(s) | 71, 77, 221 |
| BstMAI | GTCTC | 1 cut(s) | 52 |
| BstMBI | GATC | 3 cut(s) | 68, 74, 218 |
| BstMCI | CGRYCG | 1 cut(s) | 71 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 44 |
| BstSFI | CTRYAG | 1 cut(s) | 123 |
| BsuRI | GGCC | 1 cut(s) | 63 |
| BtgZI | GCGATG | 1 cut(s) | 154 |
| BtsCI | GGATG | 1 cut(s) | 136 |
| BtsIMutI | CAGTG | 1 cut(s) | 186 |
| CaiI | CAGNNNCTG | 1 cut(s) | 209 |
| Csp6I | GTAC | 1 cut(s) | 151 |
| CviJI | RGCY | 1 cut(s) | 63 |
| CviKI_1 | RGCY | 1 cut(s) | 63 |
| CviQI | GTAC | 1 cut(s) | 151 |
| DpnI | GATC | 3 cut(s) | 70, 76, 220 |
| DpnII | GATC | 3 cut(s) | 68, 74, 218 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 57 |
| EcoT22I | ATGCAT | 1 cut(s) | 146 |
| FaiI | YATR | 1 cut(s) | 7 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 13, 45 |
| FblI | GTMKAC | 1 cut(s) | 178 |
| FokI | GGATG | 1 cut(s) | 143 |
| FspBI | CTAG | 1 cut(s) | 182 |
| HaeIII | GGCC | 1 cut(s) | 63 |
| HincII | GTYRAC | 1 cut(s) | 179 |
| HindII | GTYRAC | 1 cut(s) | 179 |
| HinfI | GANTC | 2 cut(s) | 89, 157 |
| HphI | GGTGA | 2 cut(s) | 24, 42 |
| Hpy166II | GTNNAC | 1 cut(s) | 179 |
| Hpy188III | TCNNGA | 3 cut(s) | 72, 84, 222 |
| Hpy8I | GTNNAC | 1 cut(s) | 179 |
| Hpy99I | CGWCG | 1 cut(s) | 69 |
| HpyAV | CCTTC | 1 cut(s) | 167 |
| HpyCH4III | ACNGT | 2 cut(s) | 124, 190 |
| HpyCH4V | TGCA | 3 cut(s) | 104, 134, 144 |
| Kzo9I | GATC | 3 cut(s) | 68, 74, 218 |
| LpnPI | CCDG | 1 cut(s) | 66 |
| LweI | GCATC | 2 cut(s) | 121, 131 |
| MaeI | CTAG | 1 cut(s) | 182 |
| MaeIII | GTNAC | 2 cut(s) | 109, 184 |
| MalI | GATC | 3 cut(s) | 70, 76, 220 |
| MboI | GATC | 3 cut(s) | 68, 74, 218 |
| MnlI | CCTC | 2 cut(s) | 52, 121 |
| Mph1103I | ATGCAT | 1 cut(s) | 146 |
| MseI | TTAA | 1 cut(s) | 147 |
| NdeII | GATC | 3 cut(s) | 68, 74, 218 |
| NmuCI | GTSAC | 2 cut(s) | 109, 184 |
| NsiI | ATGCAT | 1 cut(s) | 146 |
| PfeI | GAWTC | 2 cut(s) | 89, 157 |
| Ple19I | CGATCG | 1 cut(s) | 71 |
| PshAI | GACNNNNGTC | 1 cut(s) | 44 |
| PstNI | CAGNNNCTG | 1 cut(s) | 209 |
| PvuI | CGATCG | 1 cut(s) | 71 |
| RsaI | GTAC | 1 cut(s) | 152 |
| RsaNI | GTAC | 1 cut(s) | 151 |
| SalI | GTCGAC | 1 cut(s) | 177 |
| SaqAI | TTAA | 1 cut(s) | 147 |
| Sau3AI | GATC | 3 cut(s) | 68, 74, 218 |
| ScaI | AGTACT | 1 cut(s) | 152 |
| SetI | ASST | 5 cut(s) | 26, 44, 55, 178, 201 |
| SfaNI | GCATC | 2 cut(s) | 121, 131 |
| SfcI | CTRYAG | 1 cut(s) | 123 |
| SpeI | ACTAGT | 1 cut(s) | 181 |
| SspMI | CTAG | 1 cut(s) | 182 |
| TaaI | ACNGT | 2 cut(s) | 124, 190 |
| TaqI | TCGA | 3 cut(s) | 71, 83, 178 |
| TatI | WGTACW | 1 cut(s) | 150 |
| TfiI | GAWTC | 2 cut(s) | 89, 157 |
| Tru1I | TTAA | 1 cut(s) | 147 |
| Tru9I | TTAA | 1 cut(s) | 147 |
| TscAI | CASTG | 1 cut(s) | 193 |
| TseFI | GTSAC | 2 cut(s) | 109, 184 |
| Tsp45I | GTSAC | 2 cut(s) | 109, 184 |
| TspRI | CASTG | 1 cut(s) | 193 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 57 |
| XmiI | GTMKAC | 1 cut(s) | 178 |
| XspI | CTAG | 1 cut(s) | 182 |
| ZrmI | AGTACT | 1 cut(s) | 152 |
| Zsp2I | ATGCAT | 1 cut(s) | 146 |