Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

11058849 .. 11062780

Gene Structure 3932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G103800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCCATACCCAAGAGAAAGAAGGTCTGCTTCACCACACAGCTCCCCTTCACCTGTAAGAGGCCGCCGGTCAAGATCATTGTCGAGGTCTAGGAGAAGTCGCTCTAGGAGCCAATCTGTTGATGCATCCAATCCTGGAAACAATTTGTATGTAACAGGCTTATCCACAAGGGTCACCTCCAGTGATCTTGAAAAATTCTTTAACAAAGAAGGGAAGGTTCTGGAGTGCCATCTGGTTACAGACCCTCGCACCAGAGAATCTCGTGGATTTGGGTTTGTCACAATGGAAACTGTTGAGGATGCAGAACGCTGCGTCAAATATTTGAATCGTTCTGTGCTTGAAGGTCGATTAGTAACTGTGGAAAAGGCAAAAAGGAAGCGAGGGAGGACACCAACTCCAGGAAGGTATCAAGGTTTAAGAGATAAAAGAGATGCAGGACGTGATCACGATCGTGATCGTAGACGATCTCGTAGCTATTCACCGCGTCGGTTGCCAGACAGAGATCCTTATTCCAGGGACCGTCGAGGAAGATCACGCTCTCCATACAGTAGGAGGGTGGATGAACATTCAGACTCGTACAGGAGGCGCAGGGAACGATCCTTGTCAGGTGGCAGAAACCCTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

209

Amino Acids

24.34

Weight (kDa)

11.5

Isoelectric Point (pI)

99.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	460
AccII	CGCG	1 cut(s)	484
AciI	CCGC	2 cut(s)	64, 482
AclWI	GGATC	2 cut(s)	497, 591
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	1 cut(s)	578
AfiI	CCNNNNNNNGG	2 cut(s)	59, 398
AgsI	TTSAA	3 cut(s)	191, 325, 341
AjiI	CACGTC	1 cut(s)	440
AjnI	CCWGG	3 cut(s)	133, 397, 512
AleI	CACNNNNGTG	1 cut(s)	450
AluBI	AGCT	2 cut(s)	42, 474
AluI	AGCT	2 cut(s)	42, 474
AlwI	GGATC	2 cut(s)	497, 591
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	309
ApoI	RAATTY	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	588
AspS9I	GGNCC	1 cut(s)	517
AsuHPI	GGTGA	4 cut(s)	24, 42, 166, 471
AvaII	GGWCC	1 cut(s)	517
BauI	CACGAG	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	1 cut(s)	237
BciT130I	CCWGG	3 cut(s)	135, 399, 514
BclI	TGATCA	1 cut(s)	442
BfaI	CTAG	3 cut(s)	90, 105, 621
BisI	GCNGC	2 cut(s)	64, 310
BlsI	GCNGC	2 cut(s)	65, 311
Bme1390I	CCNGG	3 cut(s)	135, 399, 514
Bme18I	GGWCC	1 cut(s)	517
BmgBI	CACGTC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	2 cut(s)	110, 518
BmrFI	CCNGG	3 cut(s)	135, 399, 514
BmsI	GCATC	4 cut(s)	112, 134, 289, 421
BpmI	CTGGAG	3 cut(s)	163, 242, 381
BsaBI	GATNNNNATC	2 cut(s)	447, 453
BsaJI	CCNNGG	1 cut(s)	513
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 398
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	180
Bse8I	GATNNNNATC	2 cut(s)	447, 453
BseBI	CCWGG	3 cut(s)	135, 399, 514
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	3 cut(s)	125, 304, 565
BseJI	GATNNNNATC	2 cut(s)	447, 453
BseLI	CCNNNNNNNGG	2 cut(s)	59, 398
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	484
Bsh1285I	CGRYCG	1 cut(s)	451
BshFI	GGCC	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	2 cut(s)	59, 398
BsmFI	GGGAC	1 cut(s)	530
BsnI	GGCC	1 cut(s)	63
Bsp143I	GATC	9 cut(s)	74, 184, 442, 448, 454, 464, 502, 530, 596
BspACI	CCGC	2 cut(s)	64, 482
BspANI	GGCC	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	484
BspLI	GGNNCC	2 cut(s)	110, 518
BspPI	GGATC	2 cut(s)	497, 591
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	9 cut(s)	74, 184, 442, 448, 454, 464, 502, 530, 596
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	3 cut(s)	135, 399, 514
Bst4CI	ACNGT	4 cut(s)	292, 358, 521, 548
BstEII	GGTNACC	1 cut(s)	172
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	3 cut(s)	125, 304, 565
BstFNI	CGCG	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	588
BstKTI	GATC	9 cut(s)	77, 187, 445, 451, 457, 467, 505, 533, 599
BstMBI	GATC	9 cut(s)	74, 184, 442, 448, 454, 464, 502, 530, 596
BstMCI	CGRYCG	1 cut(s)	451
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 490
BstNI	CCWGG	3 cut(s)	135, 399, 514
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	3 cut(s)	133, 397, 512
BstUI	CGCG	1 cut(s)	484
BstV1I	GCAGC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	440
BtsCI	GGATG	3 cut(s)	125, 304, 565
BtsIMutI	CAGTG	1 cut(s)	187
CfoI	GCGC	1 cut(s)	588
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	517
CseI	GACGC	2 cut(s)	301, 473
Csp6I	GTAC	1 cut(s)	577
CviJI	RGCY	5 cut(s)	42, 63, 111, 159, 474
CviKI_1	RGCY	5 cut(s)	42, 63, 111, 159, 474
CviQI	GTAC	1 cut(s)	577
DpnI	GATC	9 cut(s)	76, 186, 444, 450, 456, 466, 504, 532, 598
DpnII	GATC	9 cut(s)	74, 184, 442, 448, 454, 464, 502, 530, 596
Eco47I	GGWCC	1 cut(s)	517
Eco91I	GGTNACC	1 cut(s)	172
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoO65I	GGTNACC	1 cut(s)	172
EcoRII	CCWGG	3 cut(s)	133, 397, 512
EcoT22I	ATGCAT	1 cut(s)	127
FaiI	YATR	3 cut(s)	7, 150, 544
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FaqI	GGGAC	1 cut(s)	530
FbaI	TGATCA	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	460
Fnu4HI	GCNGC	2 cut(s)	64, 310
FokI	GGATG	3 cut(s)	112, 311, 572
Fsp4HI	GCNGC	2 cut(s)	64, 310
FspBI	CTAG	3 cut(s)	90, 105, 621
GlaI	GCGC	1 cut(s)	587
GluI	GCNGC	2 cut(s)	64, 310
GsuI	CTGGAG	3 cut(s)	163, 242, 381
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	67
HgaI	GACGC	2 cut(s)	301, 473
HhaI	GCGC	1 cut(s)	588
Hin6I	GCGC	1 cut(s)	586
HinP1I	GCGC	1 cut(s)	586
HinfI	GANTC	3 cut(s)	257, 325, 572
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	4 cut(s)	24, 42, 166, 471
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	1 cut(s)	571
Hpy188III	TCNNGA	5 cut(s)	72, 188, 221, 446, 452
Hpy8I	GTNNAC	1 cut(s)	461
Hpy99I	CGWCG	2 cut(s)	489, 525
HpyAV	CCTTC	6 cut(s)	15, 57, 203, 208, 335, 396
HpyCH4III	ACNGT	4 cut(s)	292, 358, 521, 548
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	3 cut(s)	125, 302, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 490
HpySE526I	ACGT	1 cut(s)	439
HspAI	GCGC	1 cut(s)	586
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	9 cut(s)	74, 184, 442, 448, 454, 464, 502, 530, 596
LmnI	GCTCC	2 cut(s)	47, 108
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	4 cut(s)	112, 134, 289, 421
MaeI	CTAG	3 cut(s)	90, 105, 621
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	5 cut(s)	151, 172, 235, 277, 352
MalI	GATC	9 cut(s)	76, 186, 444, 450, 456, 466, 504, 532, 598
MboI	GATC	9 cut(s)	74, 184, 442, 448, 454, 464, 502, 530, 596
MboII	GAAGA	1 cut(s)	540
MflI	RGATCY	1 cut(s)	502
MluCI	AATT	2 cut(s)	142, 194
MlyI	GAGTC	1 cut(s)	566
Mph1103I	ATGCAT	1 cut(s)	127
MseI	TTAA	2 cut(s)	201, 416
MslI	CAYNNNNRTG	1 cut(s)	450
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	3 cut(s)	135, 399, 514
MvaI	CCWGG	3 cut(s)	135, 399, 514
MvnI	CGCG	1 cut(s)	484
MwoI	GCNNNNNNNGC	2 cut(s)	108, 490
NdeII	GATC	9 cut(s)	74, 184, 442, 448, 454, 464, 502, 530, 596
NlaIV	GGNNCC	2 cut(s)	110, 518
NmuCI	GTSAC	2 cut(s)	172, 277
NsiI	ATGCAT	1 cut(s)	127
OliI	CACNNNNGTG	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	257, 325
PfoI	TCCNGGA	2 cut(s)	133, 397
PkrI	GCNGC	2 cut(s)	65, 311
Ple19I	CGATCG	1 cut(s)	451
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
Psp6I	CCWGG	3 cut(s)	133, 397, 512
PspEI	GGTNACC	1 cut(s)	172
PspGI	CCWGG	3 cut(s)	133, 397, 512
PspN4I	GGNNCC	2 cut(s)	110, 518
PspPI	GGNCC	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	502
PvuI	CGATCG	1 cut(s)	451
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
RseI	CAYNNNNRTG	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	201, 416
SatI	GCNGC	2 cut(s)	64, 310
Sau3AI	GATC	9 cut(s)	74, 184, 442, 448, 454, 464, 502, 530, 596
Sau96I	GGNCC	1 cut(s)	517
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	3 cut(s)	135, 399, 514
SfaNI	GCATC	4 cut(s)	112, 134, 289, 421
SinI	GGWCC	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	450
Sse9I	AATT	2 cut(s)	142, 194
SsiI	CCGC	2 cut(s)	64, 482
SspI	AATATT	1 cut(s)	320
SspMI	CTAG	3 cut(s)	90, 105, 621
StyD4I	CCNGG	3 cut(s)	133, 397, 512
TaaI	ACNGT	4 cut(s)	292, 358, 521, 548
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	3 cut(s)	83, 346, 523
TasI	AATT	2 cut(s)	142, 194
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	257, 325
Tru1I	TTAA	2 cut(s)	201, 416
Tru9I	TTAA	2 cut(s)	201, 416
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	172, 277
TseI	GCWGC	1 cut(s)	309
Tsp45I	GTSAC	2 cut(s)	172, 277
TspDTI	ATGAA	1 cut(s)	576
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	517
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	460
XspI	CTAG	3 cut(s)	90, 105, 621
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.