RchiOBHm_Chr2g0098261

regulation of mRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001558
Physical Location & Seq
Reverse (-)
10660771 .. 10664253
3483 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47306

Sequence Viewer

Length: 636 bp
ATGTCCAGGCCTAGGTCAAGATCAAGATCCTGGTCTAGGCCGAGGCACAGGTCTAGAAGTCGTGGCAGGTCAAGATCCAGAAGTCGTGGAAGGGATGCTGTTGTAAATCCTGGAAATACACTCTATGTGACTGGCCTATCTCAAAGGGTCTCTGAAAAGGACGTTGAAAGGCACTTTTCAAAGGAGGGAAAGGTAGCTTCATGTTTTCTTGTTGTTGAACCTCGTTCGCGAATTTCCCGTGGTTTTGCCTTCGTTACAATGGATTCTAATGAAGATGCGGAACGGTGCATTAAACATCTCAACCAGTCAGTTCTGGAAGGGCGATACATAACTGTGGAAAGGTCCCGGAGGAAGCGACCAAGGACTCCGACACCTGGGCATTATCTCGGATTGAAAAATACTAGGGACTATGAAGCCCGTGGTGACCGTGACCGTGACCGTGATCGTGGGAGGTACCGTGGGGGCTCGGGTCGAGATGACTATGGATATAGGAGGTCTCCTAGACGCTCACCCTACAGAGGTGGTCGTGATTATTCTCCTAGGGGCTCAACTTATGGTGGTGGAAGATCAAGAAGGGAGAGGTCTTATTCACCCTATGGCAGTCCAGAAAGGAAATACACTCGTGGCTCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

211

Amino Acids

24.6

Weight (kDa)

11.45

Isoelectric Point (pI)

77.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 41 - 110 4.5e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 57
Acc65I GGTACC 1 cut(s) 453
AccB1I GGYRCC 1 cut(s) 453
AccII CGCG 1 cut(s) 229
AciI CCGC 1 cut(s) 278
AclWI GGATC 2 cut(s) 21, 69
AcsI RAATTY 1 cut(s) 231
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 4 cut(s) 12, 36, 374, 518
AgsI TTSAA 4 cut(s) 167, 180, 218, 394
AjnI CCWGG 4 cut(s) 5, 29, 109, 373
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw26I GTCTC 2 cut(s) 154, 501
AlwI GGATC 2 cut(s) 21, 69
Ama87I CYCGRG 1 cut(s) 466
AoxI GGCC 3 cut(s) 8, 38, 133
ApoI RAATTY 1 cut(s) 231
Asp718I GGTACC 1 cut(s) 453
AspA2I CCTAGG 2 cut(s) 11, 539
AspS9I GGNCC 1 cut(s) 342
AsuC2I CCSGG 1 cut(s) 346
AsuHPI GGTGA 3 cut(s) 434, 501, 582
AvaI CYCGRG 1 cut(s) 466
AvaII GGWCC 1 cut(s) 342
AvrII CCTAGG 2 cut(s) 11, 539
BanI GGYRCC 1 cut(s) 453
BanII GRGCYC 2 cut(s) 467, 548
BauI CACGAG 1 cut(s) 621
BciT130I CCWGG 4 cut(s) 7, 31, 111, 375
BcnI CCSGG 1 cut(s) 346
BcoDI GTCTC 2 cut(s) 154, 501
BfaI CTAG 7 cut(s) 12, 36, 54, 402, 501, 540, 630
BfmI CTRYAG 1 cut(s) 514
BfuAI ACCTGC 1 cut(s) 57
BlnI CCTAGG 2 cut(s) 11, 539
Bme1390I CCNGG 5 cut(s) 7, 31, 111, 346, 375
Bme18I GGWCC 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 466
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 2 cut(s) 344, 455
BmrFI CCNGG 5 cut(s) 7, 31, 111, 346, 375
BmsI GCATC 2 cut(s) 85, 265
BpuMI CCSGG 1 cut(s) 346
BsaBI GATNNNNATC 1 cut(s) 25
BsaI GGTCTC 2 cut(s) 154, 501
BsaJI CCNNGG 8 cut(s) 11, 41, 238, 359, 374, 418, 457, 539
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 36, 374, 518
Bse1I ACTGG 2 cut(s) 136, 304
Bse8I GATNNNNATC 1 cut(s) 25
BseBI CCWGG 4 cut(s) 7, 31, 111, 375
BseDI CCNNGG 8 cut(s) 11, 41, 238, 359, 374, 418, 457, 539
BseGI GGATG 1 cut(s) 100
BseJI GATNNNNATC 1 cut(s) 25
BseLI CCNNNNNNNGG 4 cut(s) 12, 36, 374, 518
BseNI ACTGG 2 cut(s) 136, 304
Bsh1236I CGCG 1 cut(s) 229
BshFI GGCC 3 cut(s) 10, 40, 135
BshNI GGYRCC 1 cut(s) 453
BsiHKCI CYCGRG 1 cut(s) 466
BsiSI CCGG 1 cut(s) 346
BslFI GGGAC 2 cut(s) 328, 419
BslI CCNNNNNNNGG 4 cut(s) 12, 36, 374, 518
BsmAI GTCTC 2 cut(s) 154, 501
BsmFI GGGAC 2 cut(s) 328, 419
BsnI GGCC 3 cut(s) 10, 40, 135
Bso31I GGTCTC 2 cut(s) 154, 501
BsoBI CYCGRG 1 cut(s) 466
Bsp1286I GDGCHC 2 cut(s) 467, 548
Bsp143I GATC 5 cut(s) 20, 26, 74, 442, 566
Bsp68I TCGCGA 1 cut(s) 229
BspACI CCGC 1 cut(s) 278
BspANI GGCC 3 cut(s) 10, 40, 135
BspFNI CGCG 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 344, 455
BspMI ACCTGC 1 cut(s) 57
BspPI GGATC 2 cut(s) 21, 69
BspT107I GGYRCC 1 cut(s) 453
BspTNI GGTCTC 2 cut(s) 154, 501
BsrI ACTGG 2 cut(s) 136, 304
BssECI CCNNGG 8 cut(s) 11, 41, 238, 359, 374, 418, 457, 539
BssMI GATC 5 cut(s) 20, 26, 74, 442, 566
BssSI CACGAG 1 cut(s) 621
BssT1I CCWWGG 3 cut(s) 11, 359, 539
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 4 cut(s) 7, 31, 111, 375
Bst4CI ACNGT 6 cut(s) 285, 334, 428, 434, 440, 458
BstDSI CCRYGG 3 cut(s) 238, 418, 457
BstEII GGTNACC 1 cut(s) 422
BstENI CCTNNNNNAGG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 229
BstKTI GATC 5 cut(s) 23, 29, 77, 445, 569
BstMAI GTCTC 2 cut(s) 154, 501
BstMBI GATC 5 cut(s) 20, 26, 74, 442, 566
BstNI CCWGG 4 cut(s) 7, 31, 111, 375
BstPI GGTNACC 1 cut(s) 422
BstSCI CCNGG 5 cut(s) 5, 29, 109, 344, 373
BstSFI CTRYAG 1 cut(s) 514
BstUI CGCG 1 cut(s) 229
BstX2I RGATCY 2 cut(s) 26, 74
BstYI RGATCY 2 cut(s) 26, 74
BsuRI GGCC 3 cut(s) 10, 40, 135
BtgI CCRYGG 3 cut(s) 238, 418, 457
BtsCI GGATG 1 cut(s) 100
BtuMI TCGCGA 1 cut(s) 229
BveI ACCTGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 342
CseI GACGC 1 cut(s) 513
Csp6I GTAC 1 cut(s) 454
CviAII CATG 1 cut(s) 201
CviJI RGCY 8 cut(s) 10, 40, 135, 197, 416, 465, 546, 627
CviKI_1 RGCY 8 cut(s) 10, 40, 135, 197, 416, 465, 546, 627
CviQI GTAC 1 cut(s) 454
DpnI GATC 5 cut(s) 22, 28, 76, 444, 568
DpnII GATC 5 cut(s) 20, 26, 74, 442, 566
Eco130I CCWWGG 3 cut(s) 11, 359, 539
Eco147I AGGCCT 1 cut(s) 10
Eco24I GRGCYC 2 cut(s) 467, 548
Eco31I GGTCTC 2 cut(s) 154, 501
Eco47I GGWCC 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 466
Eco91I GGTNACC 1 cut(s) 422
EcoNI CCTNNNNNAGG 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 342
EcoO65I GGTNACC 1 cut(s) 422
EcoRII CCWGG 4 cut(s) 5, 29, 109, 373
EcoT14I CCWWGG 3 cut(s) 11, 359, 539
EcoT38I GRGCYC 2 cut(s) 467, 548
ErhI CCWWGG 3 cut(s) 11, 359, 539
FaeI CATG 1 cut(s) 204
FaiI YATR 8 cut(s) 126, 202, 329, 411, 483, 489, 555, 597
FaqI GGGAC 2 cut(s) 328, 419
FatI CATG 1 cut(s) 200
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 2 cut(s) 467, 548
FspBI CTAG 7 cut(s) 12, 36, 54, 402, 501, 540, 630
HaeIII GGCC 3 cut(s) 10, 40, 135
HapII CCGG 1 cut(s) 346
HgaI GACGC 1 cut(s) 513
Hin1II CATG 1 cut(s) 204
HinfI GANTC 2 cut(s) 263, 364
HpaII CCGG 1 cut(s) 346
HphI GGTGA 3 cut(s) 434, 501, 582
Hpy188I TCNGA 3 cut(s) 154, 369, 389
HpyAV CCTTC 4 cut(s) 84, 259, 311, 567
HpyCH4III ACNGT 6 cut(s) 285, 334, 428, 434, 440, 458
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 1 cut(s) 204
KpnI GGTACC 1 cut(s) 457
Kzo9I GATC 5 cut(s) 20, 26, 74, 442, 566
LweI GCATC 2 cut(s) 85, 265
MaeI CTAG 7 cut(s) 12, 36, 54, 402, 501, 540, 630
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 5 cut(s) 127, 253, 422, 428, 434
MalI GATC 5 cut(s) 22, 28, 76, 444, 568
MboI GATC 5 cut(s) 20, 26, 74, 442, 566
MboII GAAGA 2 cut(s) 284, 576
MflI RGATCY 2 cut(s) 26, 74
MhlI GDGCHC 2 cut(s) 467, 548
MluCI AATT 1 cut(s) 231
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 8 cut(s) 36, 178, 231, 342, 444, 486, 512, 573
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 332
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 5 cut(s) 7, 31, 111, 346, 375
MvaI CCWGG 4 cut(s) 7, 31, 111, 375
MvnI CGCG 1 cut(s) 229
NciI CCSGG 1 cut(s) 346
NdeII GATC 5 cut(s) 20, 26, 74, 442, 566
NlaIII CATG 1 cut(s) 204
NlaIV GGNNCC 2 cut(s) 344, 455
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 4 cut(s) 127, 422, 428, 434
NruI TCGCGA 1 cut(s) 229
PceI AGGCCT 1 cut(s) 10
PfeI GAWTC 1 cut(s) 263
PfoI TCCNGGA 2 cut(s) 109, 344
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PpuMI RGGWCCY 1 cut(s) 342
Psp5II RGGWCCY 1 cut(s) 342
Psp6I CCWGG 4 cut(s) 5, 29, 109, 373
PspEI GGTNACC 1 cut(s) 422
PspGI CCWGG 4 cut(s) 5, 29, 109, 373
PspN4I GGNNCC 2 cut(s) 344, 455
PspPI GGNCC 1 cut(s) 342
PspPPI RGGWCCY 1 cut(s) 342
PsuI RGATCY 2 cut(s) 26, 74
RruI TCGCGA 1 cut(s) 229
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 1 cut(s) 291
Sau3AI GATC 5 cut(s) 20, 26, 74, 442, 566
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 5 cut(s) 7, 31, 111, 346, 375
SduI GDGCHC 2 cut(s) 467, 548
SfaNI GCATC 2 cut(s) 85, 265
SfcI CTRYAG 1 cut(s) 514
SinI GGWCC 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 332
Sse9I AATT 1 cut(s) 231
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 1 cut(s) 278
SspMI CTAG 7 cut(s) 12, 36, 54, 402, 501, 540, 630
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 5 cut(s) 5, 29, 109, 344, 373
StyI CCWWGG 3 cut(s) 11, 359, 539
TaaI ACNGT 6 cut(s) 285, 334, 428, 434, 440, 458
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 472
TasI AATT 1 cut(s) 231
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 4 cut(s) 127, 422, 428, 434
Tsp45I GTSAC 4 cut(s) 127, 422, 428, 434
TspDTI ATGAA 3 cut(s) 189, 285, 426
VpaK11BI GGWCC 1 cut(s) 342
XagI CCTNNNNNAGG 1 cut(s) 34
XapI RAATTY 1 cut(s) 231
XbaI TCTAGA 2 cut(s) 53, 629
XmaJI CCTAGG 2 cut(s) 11, 539
XspI CTAG 7 cut(s) 12, 36, 54, 402, 501, 540, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.