Rh2AG118800

regulation of mRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001558
Physical Location & Seq
Reverse (-)
10688335 .. 10690714
2380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG118800.1

Sequence Viewer

Length: 252 bp
ATGGCGGATTCTCCTCGCAGAAGGTATTCACGATCCCCTTCTCCATGGAGAGCTCAGTCAAGATCCAGAAGTCGTGGAAGGGATGCCGTTGTAAATCCTGGAAATACACTCTATGTGACTGGCCTATCTCAAAGGGTCTCTGAAAAGGACGTTGAAAGGCACTTTTCAAAGGAGGGAAAGATTGTGTCAGCTATGTTGGCAGCAATCAAAGATGAGGAGTTTATCCCTCTCAACTTTAGTGAAACAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

83

Amino Acids

9.38

Weight (kDa)

10.24

Isoelectric Point (pI)

73.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 27, 57
AgsI TTSAA 2 cut(s) 155, 168
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 3 cut(s) 53, 191, 248
AluI AGCT 3 cut(s) 53, 191, 248
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 2 cut(s) 27, 57
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 142
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 73
BsaI GGTCTC 1 cut(s) 142
BsaJI CCNNGG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 212
BshFI GGCC 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 142
BsnI GGCC 1 cut(s) 123
Bso31I GGTCTC 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 2 cut(s) 32, 62
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 67
BspPI GGATC 2 cut(s) 27, 57
BspTNI GGTCTC 1 cut(s) 142
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 2 cut(s) 32, 62
BssT1I CCWWGG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 2 cut(s) 35, 65
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 2 cut(s) 32, 62
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 88
CviAII CATG 1 cut(s) 45
CviJI RGCY 4 cut(s) 53, 123, 191, 248
CviKI_1 RGCY 4 cut(s) 53, 123, 191, 248
DdeI CTNAG 1 cut(s) 54
DpnI GATC 2 cut(s) 34, 64
DpnII GATC 2 cut(s) 32, 62
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 1 cut(s) 48
FaiI YATR 3 cut(s) 46, 114, 194
FatI CATG 1 cut(s) 44
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 1 cut(s) 123
Hin1II CATG 1 cut(s) 48
HinfI GANTC 1 cut(s) 8
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 3 cut(s) 30, 60, 66
HpyAV CCTTC 3 cut(s) 15, 48, 72
HpyCH4IV ACGT 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 1 cut(s) 48
Kzo9I GATC 2 cut(s) 32, 62
LpnPI CCDG 4 cut(s) 79, 84, 105, 111
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 73
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 34, 64
MboI GATC 2 cut(s) 32, 62
MflI RGATCY 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 55
MnlI CCTC 4 cut(s) 24, 166, 208, 237
MroXI GAANNNNTTC 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 197
NcoI CCATGG 1 cut(s) 44
NdeII GATC 2 cut(s) 32, 62
NlaIII CATG 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 8
PfoI TCCNGGA 1 cut(s) 97
PkrI GCNGC 1 cut(s) 202
Psp124BI GAGCTC 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 62
SacI GAGCTC 1 cut(s) 55
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 2 cut(s) 32, 62
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 55
SetI ASST 5 cut(s) 26, 55, 153, 193, 250
SfaNI GCATC 1 cut(s) 73
SgeI CNNG 9 cut(s) 27, 42, 57, 72, 78, 86, 110, 111, 132
SsiI CCGC 1 cut(s) 5
SstI GAGCTC 1 cut(s) 55
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 44
TaiI ACGT 1 cut(s) 153
TfiI GAWTC 1 cut(s) 8
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.