Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Forward (+)

15051344 .. 15055356

Gene Structure 4013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17634

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTTGATGCCATACACGAGAGCAAAAAGGTCTGCTTCACCACAGACCTCTGTCTCACCTGTCAAAGGCCGCCGATCGAGATCATTGTCGAGGTCTAGAAGGAGCCGTTCTAGGAGCCCCTCTGTGGATGCAACCAATCCTGGAAACAACTTGTATGTAACAGGCTTATCCACAAGGGTTACCTCTGCTGATGTTGAGAAATTCTTTAACAAAGAAGGCAAGGTGTTGGAGTGCCATCTTGTAACTGACCCTCGCTCCAGAGAATCTCGTGGATTTGCATTTGTCACAATGGAAACTGTGGAGGATGCAGAGCGATGCATTAAGTACTTGAATCGTTCTGTGCTTGAAGGTCGACTAGTCACTGTGGAAAAGGCAAAGAGGAAGCGAGGGAGGACACCTACTCCAGGAAGGTATCAAGGCTTGAGAGATAAGCGAGATGCAGGACGTGATCGTGGAGATCGTGATTATGGTGATCGTGACCGTGATCGTGATCGTAGAAGATCTCGTAGCTATTCACCTCGTAGGCGGAAAGACAGAGAGCCTCCATCCAGGGACAACCGCCGAGGAAGATCACGTTCTCCACCAGCTAGGGATAGGAGGGTGGATGAGCATTCAGACTCGTATAGGAGGCGCATGGATCACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

215

Amino Acids

25.1

Weight (kDa)

11.35

Isoelectric Point (pI)

91.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	51 - 120	8.7e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	352
AciI	CCGC	3 cut(s)	70, 526, 559
AclWI	GGATC	1 cut(s)	645
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	3 cut(s)	65, 124, 404
AgsI	TTSAA	2 cut(s)	331, 347
AhlI	ACTAGT	1 cut(s)	355
AjiI	CACGTC	1 cut(s)	446
AjnI	CCWGG	3 cut(s)	139, 403, 548
AluBI	AGCT	2 cut(s)	510, 587
AluI	AGCT	2 cut(s)	510, 587
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	645
AoxI	GGCC	1 cut(s)	67
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	633
AsuHPI	GGTGA	4 cut(s)	30, 48, 482, 507
BanII	GRGCYC	1 cut(s)	119
BauI	CACGAG	2 cut(s)	16, 267
BccI	CCATC	2 cut(s)	243, 553
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	3 cut(s)	141, 405, 550
BcoDI	GTCTC	1 cut(s)	58
BcuI	ACTAGT	1 cut(s)	355
BfaI	CTAG	4 cut(s)	96, 111, 356, 588
BglII	AGATCT	1 cut(s)	500
BisI	GCNGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	71
BmcAI	AGTACT	1 cut(s)	326
Bme1390I	CCNGG	3 cut(s)	141, 405, 550
BmgBI	CACGTC	1 cut(s)	446
BmiI	GGNNCC	2 cut(s)	104, 116
BmrFI	CCNGG	3 cut(s)	141, 405, 550
BmsI	GCATC	4 cut(s)	118, 295, 305, 427
BoxI	GACNNNNGTC	1 cut(s)	50
BpmI	CTGGAG	2 cut(s)	241, 387
BpuEI	CTTGAG	1 cut(s)	442
BsaBI	GATNNNNATC	2 cut(s)	79, 489
BsaJI	CCNNGG	2 cut(s)	549, 562
BsaXI	ACNNNNNCTCC	4 cut(s)	239, 269, 385, 415
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 124, 404
Bse8I	GATNNNNATC	2 cut(s)	79, 489
BseBI	CCWGG	3 cut(s)	141, 405, 550
BseDI	CCNNGG	2 cut(s)	549, 562
BseGI	GGATG	4 cut(s)	133, 310, 545, 610
BseJI	GATNNNNATC	2 cut(s)	79, 489
BseLI	CCNNNNNNNGG	3 cut(s)	65, 124, 404
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	3 cut(s)	65, 124, 404
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	566
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	119
BspACI	CCGC	3 cut(s)	70, 526, 559
BspANI	GGCC	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	104, 116
BspPI	GGATC	1 cut(s)	645
BssECI	CCNNGG	2 cut(s)	549, 562
BssSI	CACGAG	2 cut(s)	16, 267
Bst2BI	CACGAG	2 cut(s)	16, 267
Bst2UI	CCWGG	3 cut(s)	141, 405, 550
Bst4CI	ACNGT	3 cut(s)	298, 364, 482
BstEII	GGTNACC	1 cut(s)	178
BstENI	CCTNNNNNAGG	2 cut(s)	63, 402
BstF5I	GGATG	4 cut(s)	133, 310, 545, 610
BstHHI	GCGC	1 cut(s)	633
BstMAI	GTCTC	1 cut(s)	58
BstMCI	CGRYCG	1 cut(s)	77
BstNI	CCWGG	3 cut(s)	141, 405, 550
BstPAI	GACNNNNGTC	1 cut(s)	50
BstPI	GGTNACC	1 cut(s)	178
BstSCI	CCNGG	3 cut(s)	139, 403, 548
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	328
BtrI	CACGTC	1 cut(s)	446
BtsCI	GGATG	4 cut(s)	133, 310, 545, 610
BtsIMutI	CAGTG	1 cut(s)	360
CfoI	GCGC	1 cut(s)	633
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	1 cut(s)	634
CviJI	RGCY	8 cut(s)	69, 105, 117, 165, 420, 510, 541, 587
CviKI_1	RGCY	8 cut(s)	69, 105, 117, 165, 420, 510, 541, 587
CviQI	GTAC	1 cut(s)	325
EciI	GGCGGA	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	119
Eco91I	GGTNACC	1 cut(s)	178
EcoNI	CCTNNNNNAGG	2 cut(s)	63, 402
EcoO65I	GGTNACC	1 cut(s)	178
EcoRII	CCWGG	3 cut(s)	139, 403, 548
EcoT22I	ATGCAT	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	1 cut(s)	637
FaiI	YATR	5 cut(s)	13, 156, 468, 624, 635
FalI	AAGNNNNNCTT	2 cut(s)	19, 51
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	1 cut(s)	633
FblI	GTMKAC	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	70
FokI	GGATG	4 cut(s)	140, 317, 532, 617
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	70
FspBI	CTAG	4 cut(s)	96, 111, 356, 588
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	1 cut(s)	70
GsuI	CTGGAG	2 cut(s)	241, 387
HaeIII	GGCC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	633
Hin1II	CATG	1 cut(s)	637
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HinfI	GANTC	3 cut(s)	263, 331, 617
HphI	GGTGA	4 cut(s)	30, 48, 482, 507
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	1 cut(s)	616
Hpy188III	TCNNGA	7 cut(s)	78, 96, 258, 461, 476, 488, 645
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	4 cut(s)	93, 209, 341, 402
HpyCH4III	ACNGT	3 cut(s)	298, 364, 482
HpyCH4IV	ACGT	2 cut(s)	445, 574
HpyCH4V	TGCA	5 cut(s)	131, 278, 308, 318, 440
HpySE526I	ACGT	2 cut(s)	445, 574
Hsp92II	CATG	1 cut(s)	637
HspAI	GCGC	1 cut(s)	631
LmnI	GCTCC	3 cut(s)	102, 114, 260
LweI	GCATC	4 cut(s)	118, 295, 305, 427
MaeI	CTAG	4 cut(s)	96, 111, 356, 588
MaeII	ACGT	2 cut(s)	445, 574
MaeIII	GTNAC	6 cut(s)	157, 178, 241, 283, 358, 476
MboII	GAAGA	2 cut(s)	510, 579
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	1 cut(s)	207
Mph1103I	ATGCAT	1 cut(s)	320
MseI	TTAA	2 cut(s)	207, 321
MspR9I	CCNGG	3 cut(s)	141, 405, 550
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	3 cut(s)	141, 405, 550
NlaIII	CATG	1 cut(s)	637
NlaIV	GGNNCC	2 cut(s)	104, 116
NmeAIII	GCCGAG	1 cut(s)	587
NmuCI	GTSAC	3 cut(s)	283, 358, 476
NsiI	ATGCAT	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	1 cut(s)	457
PctI	GAATGC	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	263, 331
PfoI	TCCNGGA	2 cut(s)	139, 403
PkrI	GCNGC	1 cut(s)	71
Ple19I	CGATCG	1 cut(s)	77
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
PshAI	GACNNNNGTC	1 cut(s)	50
Psp6I	CCWGG	3 cut(s)	139, 403, 548
PspEI	GGTNACC	1 cut(s)	178
PspGI	CCWGG	3 cut(s)	139, 403, 548
PspN4I	GGNNCC	2 cut(s)	104, 116
PsuI	RGATCY	1 cut(s)	500
PvuI	CGATCG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SalI	GTCGAC	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	207, 321
SatI	GCNGC	1 cut(s)	70
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	3 cut(s)	141, 405, 550
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	4 cut(s)	118, 295, 305, 427
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
SpeI	ACTAGT	1 cut(s)	355
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	3 cut(s)	70, 526, 559
SspMI	CTAG	4 cut(s)	96, 111, 356, 588
StyD4I	CCNGG	3 cut(s)	139, 403, 548
TaaI	ACNGT	3 cut(s)	298, 364, 482
TaiI	ACGT	2 cut(s)	448, 577
TaqI	TCGA	3 cut(s)	77, 89, 352
TasI	AATT	1 cut(s)	200
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	263, 331
Tru1I	TTAA	2 cut(s)	207, 321
Tru9I	TTAA	2 cut(s)	207, 321
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	3 cut(s)	283, 358, 476
Tsp45I	GTSAC	3 cut(s)	283, 358, 476
TspRI	CASTG	1 cut(s)	367
XagI	CCTNNNNNAGG	2 cut(s)	63, 402
XapI	RAATTY	1 cut(s)	200
XbaI	TCTAGA	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	352
XspI	CTAG	4 cut(s)	96, 111, 356, 588
ZrmI	AGTACT	1 cut(s)	326
Zsp2I	ATGCAT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.