Rh3DG353300

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
42557472 .. 42602600
45129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG353300.1

Sequence Viewer

Length: 1053 bp
ATGGACCTAACACAAGTCCACAACCCTAAAAGGCTAAAAATATGGATTAAGTGCGCTGAAGAATCAGTTCAAAAATGTGTCTTACTCATCTATCTGACAGTTCAACTTGCAATTCCACATGTTGTAGCTATGGTTAGAGCTGCTGACAAGAAAAGCCCAAGAGAGGCTGTTGAGTTTGTCCTACAACTGTTGAAGGTAATTATGTCTGCTTCACCACAGACCTCTGTCTCACCTGTCAAAGGCCGCCGATCGAGATCATTGTCGAGGTCTAGAAGGAGTCGTTCTAGGAGCCCATCTATGGATGCAACCAATCCTGGAAACAACTTGTATGTAACAGGCTTATCCACAAGGGTTACCTCTGCTGATGTTGAGAAATTCTTTAACAAAGAAGGCAAGGTGTTGGAGTGCCATCTTGTAACTGACCCTCGCTCCAGAGAATCTCGTGGATTTGCATTTGTCACAATGGAAACTGTAGAGGATGCAGAGCGATGCATTAAGTACTTGAATCGTTCTGTGCTTGAAGGTCGACTAGTCACTGTGGAAAAGAAGTTGGAGAAACTTCATGAAGAGGATCTTGTTGAAAGGCCGTTCAAGAAGAAACAGATCAAGATCAGGTTTCCTGAATGGGGAAGAAGTGGGAGATTTGCTCCATTTGGAGGTAAGGTGTTGTTTAGCAGAACAAATCTCACAATTGAAAAAGGAGAGAAACTGGCCATTATTGGCCCAAATGGATGTGGCAAGAGTACTTTGCTGAAACTAATAATGGGTTTACAAAAGCCAATAGCAGGTGAAGTTCTGCTTGGGGAGCATAATGTCCTAACAAACTTTTTTGAGCAAAATCAGCTCGAGTTGGTTGCTGGGTACCAAGGTTCACTGCAAAGCTTCCGCGATTTGGTCGGCGACGCATTCCTAGAAACAAATATGAGCAGAAATTGGTACTCTAGTCCTCAGGGTTACAATACCTCATGGCCTCAGGGTTACAATACCTCATGGCCTCACTTGAATGAATGTGAAAGGAGTGTGAGTTTTCCAACATTTGAAAGTCAGTACTAG

Protein Analysis

350

Amino Acids

39.68

Weight (kDa)

9.53

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 109 - 178 2.1e-16 RNA recognition motif
ABC_tran PF00005 226 - 274 1.9e-14 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 776
Acc36I ACCTGC 1 cut(s) 776
Acc65I GGTACC 1 cut(s) 861
AccB1I GGYRCC 1 cut(s) 861
AccI GTMKAC 1 cut(s) 526
AccII CGCG 1 cut(s) 888
AciI CCGC 2 cut(s) 244, 886
AclWI GGATC 1 cut(s) 579
AcoI YGGCCR 1 cut(s) 711
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 5 cut(s) 500, 745, 863, 938, 1049
AfiI CCNNNNNNNGG 7 cut(s) 163, 239, 298, 626, 656, 785, 892
AflIII ACRYGT 1 cut(s) 118
AhlI ACTAGT 1 cut(s) 529
AjnI CCWGG 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 783, 815
AluBI AGCT 4 cut(s) 128, 140, 844, 882
AluI AGCT 4 cut(s) 128, 140, 844, 882
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 1 cut(s) 579
Ama87I CYCGRG 1 cut(s) 845
AoxI GGCC 6 cut(s) 241, 584, 711, 721, 968, 992
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 66
Asp718I GGTACC 1 cut(s) 861
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 4, 722
AsuHPI GGTGA 3 cut(s) 204, 222, 800
AvaI CYCGRG 1 cut(s) 845
AvaII GGWCC 1 cut(s) 4
AxyI CCTNAGG 2 cut(s) 948, 972
BaeI ACNNNNGTAYC 4 cut(s) 853, 886, 928, 961
BalI TGGCCA 1 cut(s) 713
BanI GGYRCC 1 cut(s) 861
BanII GRGCYC 1 cut(s) 293
BauI CACGAG 1 cut(s) 441
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 301, 417
BceAI ACGGC 1 cut(s) 571
BcgI CGANNNNNNTGC 2 cut(s) 836, 870
BciT130I CCWGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 232
BcuI ACTAGT 1 cut(s) 529
BfaI CTAG 6 cut(s) 270, 285, 530, 911, 942, 1051
BfmI CTRYAG 1 cut(s) 471
BfuAI ACCTGC 1 cut(s) 776
BisI GCNGC 2 cut(s) 141, 244
BlsI GCNGC 2 cut(s) 142, 245
BmcAI AGTACT 3 cut(s) 500, 745, 1049
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 845
BmgT120I GGNCC 2 cut(s) 4, 722
BmiI GGNNCC 2 cut(s) 290, 863
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 3 cut(s) 292, 469, 479
BoxI GACNNNNGTC 1 cut(s) 224
BplI GAGNNNNNCTC 2 cut(s) 631, 663
BpmI CTGGAG 1 cut(s) 415
BsaBI GATNNNNATC 2 cut(s) 253, 608
BsaJI CCNNGG 1 cut(s) 865
BsaXI ACNNNNNCTCC 6 cut(s) 413, 443, 648, 678, 1009, 1039
Bsc4I CCNNNNNNNGG 7 cut(s) 163, 239, 298, 626, 656, 785, 892
Bse1I ACTGG 1 cut(s) 714
Bse21I CCTNAGG 2 cut(s) 948, 972
Bse8I GATNNNNATC 2 cut(s) 253, 608
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 865
BseGI GGATG 3 cut(s) 307, 484, 737
BseJI GATNNNNATC 2 cut(s) 253, 608
BseLI CCNNNNNNNGG 7 cut(s) 163, 239, 298, 626, 656, 785, 892
BseMII CTCAG 2 cut(s) 962, 986
BseNI ACTGG 1 cut(s) 714
BseXI GCAGC 1 cut(s) 127
BseYI CCCAGC 1 cut(s) 857
Bsh1236I CGCG 1 cut(s) 888
Bsh1285I CGRYCG 1 cut(s) 251
BshFI GGCC 6 cut(s) 243, 586, 713, 723, 970, 994
BshNI GGYRCC 1 cut(s) 861
BsiEI CGRYCG 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 845
BslI CCNNNNNNNGG 7 cut(s) 163, 239, 298, 626, 656, 785, 892
BsmAI GTCTC 1 cut(s) 232
BsmI GAATGC 1 cut(s) 905
BsnI GGCC 6 cut(s) 243, 586, 713, 723, 970, 994
BsoBI CYCGRG 1 cut(s) 845
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 5 cut(s) 248, 254, 571, 603, 609
BspACI CCGC 2 cut(s) 244, 886
BspANI GGCC 6 cut(s) 243, 586, 713, 723, 970, 994
BspCNI CTCAG 2 cut(s) 961, 985
BspFNI CGCG 1 cut(s) 888
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 2 cut(s) 290, 863
BspMI ACCTGC 1 cut(s) 776
BspPI GGATC 1 cut(s) 579
BspT107I GGYRCC 1 cut(s) 861
BsrI ACTGG 1 cut(s) 714
BssECI CCNNGG 1 cut(s) 865
BssMI GATC 5 cut(s) 248, 254, 571, 603, 609
BssSI CACGAG 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 865
Bst2BI CACGAG 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 4 cut(s) 100, 189, 472, 538
Bst6I CTCTTC 1 cut(s) 561
BstDEI CTNAG 2 cut(s) 948, 972
BstEII GGTNACC 1 cut(s) 352
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 3 cut(s) 307, 484, 737
BstFNI CGCG 1 cut(s) 888
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 5 cut(s) 251, 257, 574, 606, 612
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 5 cut(s) 248, 254, 571, 603, 609
BstMCI CGRYCG 1 cut(s) 251
BstMWI GCNNNNNNNGC 2 cut(s) 805, 841
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 122
BstPAI GACNNNNGTC 1 cut(s) 224
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 471
BstUI CGCG 1 cut(s) 888
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
Bsu36I CCTNAGG 2 cut(s) 948, 972
BsuRI GGCC 6 cut(s) 243, 586, 713, 723, 970, 994
BtgZI GCGATG 1 cut(s) 502
BtsCI GGATG 3 cut(s) 307, 484, 737
BtsI GCAGTG 1 cut(s) 872
BtsIMutI CAGTG 2 cut(s) 534, 872
BveI ACCTGC 1 cut(s) 776
CciI TCATGA 1 cut(s) 562
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 4, 722
CseI GACGC 1 cut(s) 911
Csp6I GTAC 5 cut(s) 499, 744, 862, 937, 1048
CviAII CATG 4 cut(s) 119, 563, 966, 990
CviQI GTAC 5 cut(s) 499, 744, 862, 937, 1048
DdeI CTNAG 2 cut(s) 948, 972
DpnI GATC 5 cut(s) 250, 256, 573, 605, 611
DpnII GATC 5 cut(s) 248, 254, 571, 603, 609
EaeI YGGCCR 1 cut(s) 711
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
Eco130I CCWWGG 1 cut(s) 865
Eco24I GRGCYC 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 78
Eco81I CCTNAGG 2 cut(s) 948, 972
Eco88I CYCGRG 1 cut(s) 845
Eco91I GGTNACC 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO65I GGTNACC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 865
EcoT22I ATGCAT 1 cut(s) 494
EcoT38I GRGCYC 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 865
FaeI CATG 4 cut(s) 122, 566, 969, 993
FalI AAGNNNNNCTT 4 cut(s) 558, 590, 783, 815
FatI CATG 4 cut(s) 118, 562, 965, 989
FblI GTMKAC 1 cut(s) 526
Fnu4HI GCNGC 2 cut(s) 141, 244
FokI GGATG 3 cut(s) 314, 491, 744
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 141, 244
FspBI CTAG 6 cut(s) 270, 285, 530, 911, 942, 1051
GlaI GCGC 1 cut(s) 55
GluI GCNGC 2 cut(s) 141, 244
GsaI CCCAGC 1 cut(s) 861
GsuI CTGGAG 1 cut(s) 415
HaeIII GGCC 6 cut(s) 243, 586, 713, 723, 970, 994
HgaI GACGC 1 cut(s) 911
HhaI GCGC 1 cut(s) 56
Hin1II CATG 4 cut(s) 122, 566, 969, 993
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 527
HindII GTYRAC 1 cut(s) 527
HindIII AAGCTT 1 cut(s) 880
HinfI GANTC 4 cut(s) 62, 277, 437, 505
HphI GGTGA 3 cut(s) 204, 222, 800
Hpy166II GTNNAC 4 cut(s) 19, 527, 770, 872
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 7 cut(s) 252, 270, 432, 563, 592, 607, 620
Hpy8I GTNNAC 4 cut(s) 19, 527, 770, 872
Hpy99I CGWCG 1 cut(s) 905
HpyAV CCTTC 4 cut(s) 187, 267, 383, 515
HpyCH4III ACNGT 4 cut(s) 100, 189, 472, 538
HpyCH4V TGCA 6 cut(s) 110, 305, 452, 482, 492, 877
HpyF10VI GCNNNNNNNGC 2 cut(s) 805, 841
HpyF3I CTNAG 2 cut(s) 948, 972
Hsp92II CATG 4 cut(s) 122, 566, 969, 993
HspAI GCGC 1 cut(s) 54
KpnI GGTACC 1 cut(s) 865
Kzo9I GATC 5 cut(s) 248, 254, 571, 603, 609
LmnI GCTCC 4 cut(s) 288, 434, 652, 805
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 3 cut(s) 292, 469, 479
MaeI CTAG 6 cut(s) 270, 285, 530, 911, 942, 1051
MaeIII GTNAC 7 cut(s) 331, 352, 415, 457, 532, 953, 977
MalI GATC 5 cut(s) 250, 256, 573, 605, 611
MboI GATC 5 cut(s) 248, 254, 571, 603, 609
MboII GAAGA 4 cut(s) 71, 578, 607, 642
MfeI CAATTG 1 cut(s) 690
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 1 cut(s) 293
MlsI TGGCCA 1 cut(s) 713
MluCI AATT 5 cut(s) 111, 198, 374, 690, 931
MluNI TGGCCA 1 cut(s) 713
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 2 cut(s) 381, 531
Mox20I TGGCCA 1 cut(s) 713
Mph1103I ATGCAT 1 cut(s) 494
MroXI GAANNNNTTC 1 cut(s) 66
MscI TGGCCA 1 cut(s) 713
MseI TTAA 3 cut(s) 48, 381, 495
MslI CAYNNNNRTG 1 cut(s) 1002
Msp20I TGGCCA 1 cut(s) 713
MspR9I CCNGG 1 cut(s) 315
MunI CAATTG 1 cut(s) 690
Mva1269I GAATGC 1 cut(s) 905
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 888
MwoI GCNNNNNNNGC 2 cut(s) 805, 841
NdeII GATC 5 cut(s) 248, 254, 571, 603, 609
NlaIII CATG 4 cut(s) 122, 566, 969, 993
NlaIV GGNNCC 2 cut(s) 290, 863
NmuCI GTSAC 2 cut(s) 457, 532
NsiI ATGCAT 1 cut(s) 494
NspI RCATGY 1 cut(s) 122
PaeR7I CTCGAG 1 cut(s) 845
PagI TCATGA 1 cut(s) 562
PaqCI CACCTGC 1 cut(s) 776
PciI ACATGT 1 cut(s) 118
PctI GAATGC 1 cut(s) 905
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 3 cut(s) 62, 437, 505
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 2 cut(s) 142, 245
Ple19I CGATCG 1 cut(s) 251
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PscI ACATGT 1 cut(s) 118
PshAI GACNNNNGTC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 313
PspEI GGTNACC 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 857
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 290, 863
PspPI GGNCC 2 cut(s) 4, 722
PspXI VCTCGAGB 1 cut(s) 845
PsuI RGATCY 1 cut(s) 571
PvuI CGATCG 1 cut(s) 251
RsaI GTAC 5 cut(s) 500, 745, 863, 938, 1049
RsaNI GTAC 5 cut(s) 499, 744, 862, 937, 1048
RseI CAYNNNNRTG 1 cut(s) 1002
SalI GTCGAC 1 cut(s) 525
SaqAI TTAA 3 cut(s) 48, 381, 495
SatI GCNGC 2 cut(s) 141, 244
Sau3AI GATC 5 cut(s) 248, 254, 571, 603, 609
Sau96I GGNCC 2 cut(s) 4, 722
ScaI AGTACT 3 cut(s) 500, 745, 1049
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 1 cut(s) 293
SfaNI GCATC 3 cut(s) 292, 469, 479
SfcI CTRYAG 1 cut(s) 471
Sfr274I CTCGAG 1 cut(s) 845
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 845
SmiMI CAYNNNNRTG 1 cut(s) 1002
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
SpeI ACTAGT 1 cut(s) 529
Sse9I AATT 5 cut(s) 111, 198, 374, 690, 931
SsiI CCGC 2 cut(s) 244, 886
SspMI CTAG 6 cut(s) 270, 285, 530, 911, 942, 1051
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 865
TaaI ACNGT 4 cut(s) 100, 189, 472, 538
TaqI TCGA 4 cut(s) 251, 263, 526, 846
TasI AATT 5 cut(s) 111, 198, 374, 690, 931
TatI WGTACW 3 cut(s) 498, 743, 1047
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 3 cut(s) 62, 437, 505
Tru1I TTAA 3 cut(s) 48, 381, 495
Tru9I TTAA 3 cut(s) 48, 381, 495
TscAI CASTG 2 cut(s) 541, 879
TseFI GTSAC 2 cut(s) 457, 532
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 2 cut(s) 457, 532
TspDTI ATGAA 3 cut(s) 551, 579, 1020
TspRI CASTG 2 cut(s) 541, 879
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 1 cut(s) 374
XbaI TCTAGA 1 cut(s) 269
XceI RCATGY 1 cut(s) 122
XhoI CTCGAG 1 cut(s) 845
XmiI GTMKAC 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 6 cut(s) 270, 285, 530, 911, 942, 1051
ZrmI AGTACT 3 cut(s) 500, 745, 1049
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.