RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 776 |
| Acc36I | ACCTGC | 1 cut(s) | 776 |
| Acc65I | GGTACC | 1 cut(s) | 861 |
| AccB1I | GGYRCC | 1 cut(s) | 861 |
| AccI | GTMKAC | 1 cut(s) | 526 |
| AccII | CGCG | 1 cut(s) | 888 |
| AciI | CCGC | 2 cut(s) | 244, 886 |
| AclWI | GGATC | 1 cut(s) | 579 |
| AcoI | YGGCCR | 1 cut(s) | 711 |
| AcsI | RAATTY | 1 cut(s) | 374 |
| AcuI | CTGAAG | 1 cut(s) | 78 |
| AfaI | GTAC | 5 cut(s) | 500, 745, 863, 938, 1049 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 163, 239, 298, 626, 656, 785, 892 |
| AflIII | ACRYGT | 1 cut(s) | 118 |
| AhlI | ACTAGT | 1 cut(s) | 529 |
| AjnI | CCWGG | 1 cut(s) | 313 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 783, 815 |
| AluBI | AGCT | 4 cut(s) | 128, 140, 844, 882 |
| AluI | AGCT | 4 cut(s) | 128, 140, 844, 882 |
| Alw26I | GTCTC | 1 cut(s) | 232 |
| AlwI | GGATC | 1 cut(s) | 579 |
| Ama87I | CYCGRG | 1 cut(s) | 845 |
| AoxI | GGCC | 6 cut(s) | 241, 584, 711, 721, 968, 992 |
| ApeKI | GCWGC | 1 cut(s) | 140 |
| ApoI | RAATTY | 1 cut(s) | 374 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 66 |
| Asp718I | GGTACC | 1 cut(s) | 861 |
| AspLEI | GCGC | 1 cut(s) | 56 |
| AspS9I | GGNCC | 2 cut(s) | 4, 722 |
| AsuHPI | GGTGA | 3 cut(s) | 204, 222, 800 |
| AvaI | CYCGRG | 1 cut(s) | 845 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| AxyI | CCTNAGG | 2 cut(s) | 948, 972 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 853, 886, 928, 961 |
| BalI | TGGCCA | 1 cut(s) | 713 |
| BanI | GGYRCC | 1 cut(s) | 861 |
| BanII | GRGCYC | 1 cut(s) | 293 |
| BauI | CACGAG | 1 cut(s) | 441 |
| BbvI | GCAGC | 1 cut(s) | 127 |
| BccI | CCATC | 2 cut(s) | 301, 417 |
| BceAI | ACGGC | 1 cut(s) | 571 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 836, 870 |
| BciT130I | CCWGG | 1 cut(s) | 315 |
| BcoDI | GTCTC | 1 cut(s) | 232 |
| BcuI | ACTAGT | 1 cut(s) | 529 |
| BfaI | CTAG | 6 cut(s) | 270, 285, 530, 911, 942, 1051 |
| BfmI | CTRYAG | 1 cut(s) | 471 |
| BfuAI | ACCTGC | 1 cut(s) | 776 |
| BisI | GCNGC | 2 cut(s) | 141, 244 |
| BlsI | GCNGC | 2 cut(s) | 142, 245 |
| BmcAI | AGTACT | 3 cut(s) | 500, 745, 1049 |
| Bme1390I | CCNGG | 1 cut(s) | 315 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmeT110I | CYCGRG | 1 cut(s) | 845 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 722 |
| BmiI | GGNNCC | 2 cut(s) | 290, 863 |
| BmrFI | CCNGG | 1 cut(s) | 315 |
| BmsI | GCATC | 3 cut(s) | 292, 469, 479 |
| BoxI | GACNNNNGTC | 1 cut(s) | 224 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 631, 663 |
| BpmI | CTGGAG | 1 cut(s) | 415 |
| BsaBI | GATNNNNATC | 2 cut(s) | 253, 608 |
| BsaJI | CCNNGG | 1 cut(s) | 865 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 413, 443, 648, 678, 1009, 1039 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 163, 239, 298, 626, 656, 785, 892 |
| Bse1I | ACTGG | 1 cut(s) | 714 |
| Bse21I | CCTNAGG | 2 cut(s) | 948, 972 |
| Bse8I | GATNNNNATC | 2 cut(s) | 253, 608 |
| BseBI | CCWGG | 1 cut(s) | 315 |
| BseDI | CCNNGG | 1 cut(s) | 865 |
| BseGI | GGATG | 3 cut(s) | 307, 484, 737 |
| BseJI | GATNNNNATC | 2 cut(s) | 253, 608 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 163, 239, 298, 626, 656, 785, 892 |
| BseMII | CTCAG | 2 cut(s) | 962, 986 |
| BseNI | ACTGG | 1 cut(s) | 714 |
| BseXI | GCAGC | 1 cut(s) | 127 |
| BseYI | CCCAGC | 1 cut(s) | 857 |
| Bsh1236I | CGCG | 1 cut(s) | 888 |
| Bsh1285I | CGRYCG | 1 cut(s) | 251 |
| BshFI | GGCC | 6 cut(s) | 243, 586, 713, 723, 970, 994 |
| BshNI | GGYRCC | 1 cut(s) | 861 |
| BsiEI | CGRYCG | 1 cut(s) | 251 |
| BsiHKCI | CYCGRG | 1 cut(s) | 845 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 163, 239, 298, 626, 656, 785, 892 |
| BsmAI | GTCTC | 1 cut(s) | 232 |
| BsmI | GAATGC | 1 cut(s) | 905 |
| BsnI | GGCC | 6 cut(s) | 243, 586, 713, 723, 970, 994 |
| BsoBI | CYCGRG | 1 cut(s) | 845 |
| Bsp1286I | GDGCHC | 1 cut(s) | 293 |
| Bsp143I | GATC | 5 cut(s) | 248, 254, 571, 603, 609 |
| BspACI | CCGC | 2 cut(s) | 244, 886 |
| BspANI | GGCC | 6 cut(s) | 243, 586, 713, 723, 970, 994 |
| BspCNI | CTCAG | 2 cut(s) | 961, 985 |
| BspFNI | CGCG | 1 cut(s) | 888 |
| BspHI | TCATGA | 1 cut(s) | 562 |
| BspLI | GGNNCC | 2 cut(s) | 290, 863 |
| BspMI | ACCTGC | 1 cut(s) | 776 |
| BspPI | GGATC | 1 cut(s) | 579 |
| BspT107I | GGYRCC | 1 cut(s) | 861 |
| BsrI | ACTGG | 1 cut(s) | 714 |
| BssECI | CCNNGG | 1 cut(s) | 865 |
| BssMI | GATC | 5 cut(s) | 248, 254, 571, 603, 609 |
| BssSI | CACGAG | 1 cut(s) | 441 |
| BssT1I | CCWWGG | 1 cut(s) | 865 |
| Bst2BI | CACGAG | 1 cut(s) | 441 |
| Bst2UI | CCWGG | 1 cut(s) | 315 |
| Bst4CI | ACNGT | 4 cut(s) | 100, 189, 472, 538 |
| Bst6I | CTCTTC | 1 cut(s) | 561 |
| BstDEI | CTNAG | 2 cut(s) | 948, 972 |
| BstEII | GGTNACC | 1 cut(s) | 352 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 237 |
| BstF5I | GGATG | 3 cut(s) | 307, 484, 737 |
| BstFNI | CGCG | 1 cut(s) | 888 |
| BstHHI | GCGC | 1 cut(s) | 56 |
| BstKTI | GATC | 5 cut(s) | 251, 257, 574, 606, 612 |
| BstMAI | GTCTC | 1 cut(s) | 232 |
| BstMBI | GATC | 5 cut(s) | 248, 254, 571, 603, 609 |
| BstMCI | CGRYCG | 1 cut(s) | 251 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 805, 841 |
| BstNI | CCWGG | 1 cut(s) | 315 |
| BstNSI | RCATGY | 1 cut(s) | 122 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 224 |
| BstPI | GGTNACC | 1 cut(s) | 352 |
| BstSCI | CCNGG | 1 cut(s) | 313 |
| BstSFI | CTRYAG | 1 cut(s) | 471 |
| BstUI | CGCG | 1 cut(s) | 888 |
| BstV1I | GCAGC | 1 cut(s) | 127 |
| BstX2I | RGATCY | 1 cut(s) | 571 |
| BstYI | RGATCY | 1 cut(s) | 571 |
| Bsu36I | CCTNAGG | 2 cut(s) | 948, 972 |
| BsuRI | GGCC | 6 cut(s) | 243, 586, 713, 723, 970, 994 |
| BtgZI | GCGATG | 1 cut(s) | 502 |
| BtsCI | GGATG | 3 cut(s) | 307, 484, 737 |
| BtsI | GCAGTG | 1 cut(s) | 872 |
| BtsIMutI | CAGTG | 2 cut(s) | 534, 872 |
| BveI | ACCTGC | 1 cut(s) | 776 |
| CciI | TCATGA | 1 cut(s) | 562 |
| CfoI | GCGC | 1 cut(s) | 56 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 722 |
| CseI | GACGC | 1 cut(s) | 911 |
| Csp6I | GTAC | 5 cut(s) | 499, 744, 862, 937, 1048 |
| CviAII | CATG | 4 cut(s) | 119, 563, 966, 990 |
| CviQI | GTAC | 5 cut(s) | 499, 744, 862, 937, 1048 |
| DdeI | CTNAG | 2 cut(s) | 948, 972 |
| DpnI | GATC | 5 cut(s) | 250, 256, 573, 605, 611 |
| DpnII | GATC | 5 cut(s) | 248, 254, 571, 603, 609 |
| EaeI | YGGCCR | 1 cut(s) | 711 |
| Eam1104I | CTCTTC | 1 cut(s) | 561 |
| EarI | CTCTTC | 1 cut(s) | 561 |
| Eco130I | CCWWGG | 1 cut(s) | 865 |
| Eco24I | GRGCYC | 1 cut(s) | 293 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco57I | CTGAAG | 1 cut(s) | 78 |
| Eco81I | CCTNAGG | 2 cut(s) | 948, 972 |
| Eco88I | CYCGRG | 1 cut(s) | 845 |
| Eco91I | GGTNACC | 1 cut(s) | 352 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 237 |
| EcoO65I | GGTNACC | 1 cut(s) | 352 |
| EcoRII | CCWGG | 1 cut(s) | 313 |
| EcoT14I | CCWWGG | 1 cut(s) | 865 |
| EcoT22I | ATGCAT | 1 cut(s) | 494 |
| EcoT38I | GRGCYC | 1 cut(s) | 293 |
| ErhI | CCWWGG | 1 cut(s) | 865 |
| FaeI | CATG | 4 cut(s) | 122, 566, 969, 993 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 558, 590, 783, 815 |
| FatI | CATG | 4 cut(s) | 118, 562, 965, 989 |
| FblI | GTMKAC | 1 cut(s) | 526 |
| Fnu4HI | GCNGC | 2 cut(s) | 141, 244 |
| FokI | GGATG | 3 cut(s) | 314, 491, 744 |
| FriOI | GRGCYC | 1 cut(s) | 293 |
| Fsp4HI | GCNGC | 2 cut(s) | 141, 244 |
| FspBI | CTAG | 6 cut(s) | 270, 285, 530, 911, 942, 1051 |
| GlaI | GCGC | 1 cut(s) | 55 |
| GluI | GCNGC | 2 cut(s) | 141, 244 |
| GsaI | CCCAGC | 1 cut(s) | 861 |
| GsuI | CTGGAG | 1 cut(s) | 415 |
| HaeIII | GGCC | 6 cut(s) | 243, 586, 713, 723, 970, 994 |
| HgaI | GACGC | 1 cut(s) | 911 |
| HhaI | GCGC | 1 cut(s) | 56 |
| Hin1II | CATG | 4 cut(s) | 122, 566, 969, 993 |
| Hin6I | GCGC | 1 cut(s) | 54 |
| HinP1I | GCGC | 1 cut(s) | 54 |
| HincII | GTYRAC | 1 cut(s) | 527 |
| HindII | GTYRAC | 1 cut(s) | 527 |
| HindIII | AAGCTT | 1 cut(s) | 880 |
| HinfI | GANTC | 4 cut(s) | 62, 277, 437, 505 |
| HphI | GGTGA | 3 cut(s) | 204, 222, 800 |
| Hpy166II | GTNNAC | 4 cut(s) | 19, 527, 770, 872 |
| Hpy188I | TCNGA | 1 cut(s) | 96 |
| Hpy188III | TCNNGA | 7 cut(s) | 252, 270, 432, 563, 592, 607, 620 |
| Hpy8I | GTNNAC | 4 cut(s) | 19, 527, 770, 872 |
| Hpy99I | CGWCG | 1 cut(s) | 905 |
| HpyAV | CCTTC | 4 cut(s) | 187, 267, 383, 515 |
| HpyCH4III | ACNGT | 4 cut(s) | 100, 189, 472, 538 |
| HpyCH4V | TGCA | 6 cut(s) | 110, 305, 452, 482, 492, 877 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 805, 841 |
| HpyF3I | CTNAG | 2 cut(s) | 948, 972 |
| Hsp92II | CATG | 4 cut(s) | 122, 566, 969, 993 |
| HspAI | GCGC | 1 cut(s) | 54 |
| KpnI | GGTACC | 1 cut(s) | 865 |
| Kzo9I | GATC | 5 cut(s) | 248, 254, 571, 603, 609 |
| LmnI | GCTCC | 4 cut(s) | 288, 434, 652, 805 |
| Lsp1109I | GCAGC | 1 cut(s) | 127 |
| LweI | GCATC | 3 cut(s) | 292, 469, 479 |
| MaeI | CTAG | 6 cut(s) | 270, 285, 530, 911, 942, 1051 |
| MaeIII | GTNAC | 7 cut(s) | 331, 352, 415, 457, 532, 953, 977 |
| MalI | GATC | 5 cut(s) | 250, 256, 573, 605, 611 |
| MboI | GATC | 5 cut(s) | 248, 254, 571, 603, 609 |
| MboII | GAAGA | 4 cut(s) | 71, 578, 607, 642 |
| MfeI | CAATTG | 1 cut(s) | 690 |
| MflI | RGATCY | 1 cut(s) | 571 |
| MhlI | GDGCHC | 1 cut(s) | 293 |
| MlsI | TGGCCA | 1 cut(s) | 713 |
| MluCI | AATT | 5 cut(s) | 111, 198, 374, 690, 931 |
| MluNI | TGGCCA | 1 cut(s) | 713 |
| MlyI | GAGTC | 1 cut(s) | 286 |
| MmeI | TCCRAC | 2 cut(s) | 381, 531 |
| Mox20I | TGGCCA | 1 cut(s) | 713 |
| Mph1103I | ATGCAT | 1 cut(s) | 494 |
| MroXI | GAANNNNTTC | 1 cut(s) | 66 |
| MscI | TGGCCA | 1 cut(s) | 713 |
| MseI | TTAA | 3 cut(s) | 48, 381, 495 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1002 |
| Msp20I | TGGCCA | 1 cut(s) | 713 |
| MspR9I | CCNGG | 1 cut(s) | 315 |
| MunI | CAATTG | 1 cut(s) | 690 |
| Mva1269I | GAATGC | 1 cut(s) | 905 |
| MvaI | CCWGG | 1 cut(s) | 315 |
| MvnI | CGCG | 1 cut(s) | 888 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 805, 841 |
| NdeII | GATC | 5 cut(s) | 248, 254, 571, 603, 609 |
| NlaIII | CATG | 4 cut(s) | 122, 566, 969, 993 |
| NlaIV | GGNNCC | 2 cut(s) | 290, 863 |
| NmuCI | GTSAC | 2 cut(s) | 457, 532 |
| NsiI | ATGCAT | 1 cut(s) | 494 |
| NspI | RCATGY | 1 cut(s) | 122 |
| PaeR7I | CTCGAG | 1 cut(s) | 845 |
| PagI | TCATGA | 1 cut(s) | 562 |
| PaqCI | CACCTGC | 1 cut(s) | 776 |
| PciI | ACATGT | 1 cut(s) | 118 |
| PctI | GAATGC | 1 cut(s) | 905 |
| PdmI | GAANNNNTTC | 1 cut(s) | 66 |
| PfeI | GAWTC | 3 cut(s) | 62, 437, 505 |
| PfoI | TCCNGGA | 1 cut(s) | 313 |
| PkrI | GCNGC | 2 cut(s) | 142, 245 |
| Ple19I | CGATCG | 1 cut(s) | 251 |
| PleI | GAGTC | 1 cut(s) | 285 |
| PpsI | GAGTC | 1 cut(s) | 285 |
| PscI | ACATGT | 1 cut(s) | 118 |
| PshAI | GACNNNNGTC | 1 cut(s) | 224 |
| Psp6I | CCWGG | 1 cut(s) | 313 |
| PspEI | GGTNACC | 1 cut(s) | 352 |
| PspFI | CCCAGC | 1 cut(s) | 857 |
| PspGI | CCWGG | 1 cut(s) | 313 |
| PspN4I | GGNNCC | 2 cut(s) | 290, 863 |
| PspPI | GGNCC | 2 cut(s) | 4, 722 |
| PspXI | VCTCGAGB | 1 cut(s) | 845 |
| PsuI | RGATCY | 1 cut(s) | 571 |
| PvuI | CGATCG | 1 cut(s) | 251 |
| RsaI | GTAC | 5 cut(s) | 500, 745, 863, 938, 1049 |
| RsaNI | GTAC | 5 cut(s) | 499, 744, 862, 937, 1048 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1002 |
| SalI | GTCGAC | 1 cut(s) | 525 |
| SaqAI | TTAA | 3 cut(s) | 48, 381, 495 |
| SatI | GCNGC | 2 cut(s) | 141, 244 |
| Sau3AI | GATC | 5 cut(s) | 248, 254, 571, 603, 609 |
| Sau96I | GGNCC | 2 cut(s) | 4, 722 |
| ScaI | AGTACT | 3 cut(s) | 500, 745, 1049 |
| SchI | GAGTC | 1 cut(s) | 286 |
| ScrFI | CCNGG | 1 cut(s) | 315 |
| SduI | GDGCHC | 1 cut(s) | 293 |
| SfaNI | GCATC | 3 cut(s) | 292, 469, 479 |
| SfcI | CTRYAG | 1 cut(s) | 471 |
| Sfr274I | CTCGAG | 1 cut(s) | 845 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SlaI | CTCGAG | 1 cut(s) | 845 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1002 |
| SmlI | CTYRAG | 1 cut(s) | 845 |
| SmoI | CTYRAG | 1 cut(s) | 845 |
| SpeI | ACTAGT | 1 cut(s) | 529 |
| Sse9I | AATT | 5 cut(s) | 111, 198, 374, 690, 931 |
| SsiI | CCGC | 2 cut(s) | 244, 886 |
| SspMI | CTAG | 6 cut(s) | 270, 285, 530, 911, 942, 1051 |
| StyD4I | CCNGG | 1 cut(s) | 313 |
| StyI | CCWWGG | 1 cut(s) | 865 |
| TaaI | ACNGT | 4 cut(s) | 100, 189, 472, 538 |
| TaqI | TCGA | 4 cut(s) | 251, 263, 526, 846 |
| TasI | AATT | 5 cut(s) | 111, 198, 374, 690, 931 |
| TatI | WGTACW | 3 cut(s) | 498, 743, 1047 |
| TauI | GCSGC | 1 cut(s) | 246 |
| TfiI | GAWTC | 3 cut(s) | 62, 437, 505 |
| Tru1I | TTAA | 3 cut(s) | 48, 381, 495 |
| Tru9I | TTAA | 3 cut(s) | 48, 381, 495 |
| TscAI | CASTG | 2 cut(s) | 541, 879 |
| TseFI | GTSAC | 2 cut(s) | 457, 532 |
| TseI | GCWGC | 1 cut(s) | 140 |
| Tsp45I | GTSAC | 2 cut(s) | 457, 532 |
| TspDTI | ATGAA | 3 cut(s) | 551, 579, 1020 |
| TspRI | CASTG | 2 cut(s) | 541, 879 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 237 |
| XapI | RAATTY | 1 cut(s) | 374 |
| XbaI | TCTAGA | 1 cut(s) | 269 |
| XceI | RCATGY | 1 cut(s) | 122 |
| XhoI | CTCGAG | 1 cut(s) | 845 |
| XmiI | GTMKAC | 1 cut(s) | 526 |
| XmnI | GAANNNNTTC | 1 cut(s) | 66 |
| XspI | CTAG | 6 cut(s) | 270, 285, 530, 911, 942, 1051 |
| ZrmI | AGTACT | 3 cut(s) | 500, 745, 1049 |
| Zsp2I | ATGCAT | 1 cut(s) | 494 |