Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Forward (+)

13748082 .. 13752116

Gene Structure 4035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG162600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAAACTGTAGAGGATGCAGAGCGATGCATTAAGTACTTGAATCGTTCTGTGCTTGAAGGTCGACTAGTCACTGTGGAAAAGGCGAAGAGGAAGCGAGGGAGGACTCCTACTCCAGGAAGGTATCAAGGCTTGAGAGATAAGCGAGATGCAGGACGTGATCGTGGAGATCGTGATTATGGTGATCGTGACCGTGACCGCGATCGTAGAAGATCTCGTAGCTATTCACCTCGTAGGCGGAAAGACAGAGAGCCTCCTTCCAGGGACAACCGCCGAGGAAGATCACGTTCTCCACCAGCTAGGGATAGGAGGGTGGATGAGCATTCAGACTCGTATAGGAGGCGCGTGGATCACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

119

Amino Acids

14.38

Weight (kDa)

11.2

Isoelectric Point (pI)

84.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	64
AccII	CGCG	2 cut(s)	201, 345
AciI	CCGC	3 cut(s)	199, 238, 271
AclWI	GGATC	1 cut(s)	357
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	2 cut(s)	43, 59
AhlI	ACTAGT	1 cut(s)	67
AjiI	CACGTC	1 cut(s)	158
AjnI	CCWGG	2 cut(s)	115, 260
AluBI	AGCT	2 cut(s)	222, 299
AluI	AGCT	2 cut(s)	222, 299
AlwI	GGATC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	194, 219
BciT130I	CCWGG	2 cut(s)	117, 262
BcuI	ACTAGT	1 cut(s)	67
BfaI	CTAG	2 cut(s)	68, 300
BfmI	CTRYAG	1 cut(s)	9
BglII	AGATCT	1 cut(s)	212
BmcAI	AGTACT	1 cut(s)	38
Bme1390I	CCNGG	2 cut(s)	117, 262
BmgBI	CACGTC	1 cut(s)	158
BmrFI	CCNGG	2 cut(s)	117, 262
BmsI	GCATC	3 cut(s)	7, 17, 139
BpmI	CTGGAG	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	261, 274
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
BseBI	CCWGG	2 cut(s)	117, 262
BseDI	CCNNGG	2 cut(s)	261, 274
BseGI	GGATG	2 cut(s)	22, 322
BseLI	CCNNNNNNNGG	1 cut(s)	116
Bsh1236I	CGCG	2 cut(s)	201, 345
Bsh1285I	CGRYCG	1 cut(s)	205
BsiEI	CGRYCG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	322
Bsp143I	GATC	7 cut(s)	160, 169, 184, 202, 212, 281, 349
BspACI	CCGC	3 cut(s)	199, 238, 271
BspFNI	CGCG	2 cut(s)	201, 345
BspPI	GGATC	1 cut(s)	357
BssECI	CCNNGG	2 cut(s)	261, 274
BssMI	GATC	7 cut(s)	160, 169, 184, 202, 212, 281, 349
Bst2UI	CCWGG	2 cut(s)	117, 262
Bst4CI	ACNGT	3 cut(s)	10, 76, 194
Bst6I	CTCTTC	1 cut(s)	83
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	22, 322
BstFNI	CGCG	2 cut(s)	201, 345
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	7 cut(s)	163, 172, 187, 205, 215, 284, 352
BstMBI	GATC	7 cut(s)	160, 169, 184, 202, 212, 281, 349
BstMCI	CGRYCG	1 cut(s)	205
BstNI	CCWGG	2 cut(s)	117, 262
BstSCI	CCNGG	2 cut(s)	115, 260
BstSFI	CTRYAG	1 cut(s)	9
BstUI	CGCG	2 cut(s)	201, 345
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BtgZI	GCGATG	1 cut(s)	40
BtrI	CACGTC	1 cut(s)	158
BtsCI	GGATG	2 cut(s)	22, 322
BtsIMutI	CAGTG	1 cut(s)	72
CfoI	GCGC	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	37
CviJI	RGCY	4 cut(s)	132, 222, 253, 299
CviKI_1	RGCY	4 cut(s)	132, 222, 253, 299
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	7 cut(s)	162, 171, 186, 204, 214, 283, 351
DpnII	GATC	7 cut(s)	160, 169, 184, 202, 212, 281, 349
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	253
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	115, 260
EcoT22I	ATGCAT	1 cut(s)	32
FaiI	YATR	2 cut(s)	180, 336
FaqI	GGGAC	1 cut(s)	278
FblI	GTMKAC	1 cut(s)	64
FokI	GGATG	2 cut(s)	29, 329
FspBI	CTAG	2 cut(s)	68, 300
GlaI	GCGC	1 cut(s)	344
GsuI	CTGGAG	1 cut(s)	99
HhaI	GCGC	1 cut(s)	345
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HincII	GTYRAC	1 cut(s)	65
HindII	GTYRAC	1 cut(s)	65
HinfI	GANTC	3 cut(s)	43, 106, 329
HphI	GGTGA	2 cut(s)	194, 219
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	3 cut(s)	173, 188, 357
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	3 cut(s)	53, 114, 267
HpyCH4III	ACNGT	3 cut(s)	10, 76, 194
HpyCH4IV	ACGT	2 cut(s)	157, 286
HpyCH4V	TGCA	3 cut(s)	20, 30, 152
HpySE526I	ACGT	2 cut(s)	157, 286
HspAI	GCGC	1 cut(s)	343
Kzo9I	GATC	7 cut(s)	160, 169, 184, 202, 212, 281, 349
LpnPI	CCDG	6 cut(s)	102, 129, 138, 247, 274, 309
LweI	GCATC	3 cut(s)	7, 17, 139
MaeI	CTAG	2 cut(s)	68, 300
MaeII	ACGT	2 cut(s)	157, 286
MaeIII	GTNAC	3 cut(s)	70, 188, 194
MalI	GATC	7 cut(s)	162, 171, 186, 204, 214, 283, 351
MboI	GATC	7 cut(s)	160, 169, 184, 202, 212, 281, 349
MboII	GAAGA	3 cut(s)	100, 222, 291
MflI	RGATCY	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	100, 323
MnlI	CCTC	9 cut(s)	7, 84, 92, 96, 240, 264, 269, 303, 333
Mph1103I	ATGCAT	1 cut(s)	32
MseI	TTAA	1 cut(s)	33
MspR9I	CCNGG	2 cut(s)	117, 262
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	2 cut(s)	117, 262
MvnI	CGCG	2 cut(s)	201, 345
NdeII	GATC	7 cut(s)	160, 169, 184, 202, 212, 281, 349
NmeAIII	GCCGAG	1 cut(s)	299
NmuCI	GTSAC	3 cut(s)	70, 188, 194
NsiI	ATGCAT	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PctI	GAATGC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	43
PfoI	TCCNGGA	1 cut(s)	115
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	2 cut(s)	100, 323
PpsI	GAGTC	2 cut(s)	100, 323
Psp6I	CCWGG	2 cut(s)	115, 260
PspGI	CCWGG	2 cut(s)	115, 260
PsuI	RGATCY	1 cut(s)	212
PvuI	CGATCG	1 cut(s)	205
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SalI	GTCGAC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	33
Sau3AI	GATC	7 cut(s)	160, 169, 184, 202, 212, 281, 349
ScaI	AGTACT	1 cut(s)	38
SchI	GAGTC	2 cut(s)	100, 323
ScrFI	CCNGG	2 cut(s)	117, 262
SetI	ASST	7 cut(s)	64, 125, 160, 224, 232, 289, 301
SfaNI	GCATC	3 cut(s)	7, 17, 139
SfcI	CTRYAG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
SpeI	ACTAGT	1 cut(s)	67
SsiI	CCGC	3 cut(s)	199, 238, 271
SspMI	CTAG	2 cut(s)	68, 300
StyD4I	CCNGG	2 cut(s)	115, 260
TaaI	ACNGT	3 cut(s)	10, 76, 194
TaiI	ACGT	2 cut(s)	160, 289
TaqI	TCGA	1 cut(s)	64
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	3 cut(s)	70, 188, 194
Tsp45I	GTSAC	3 cut(s)	70, 188, 194
TspRI	CASTG	1 cut(s)	79
XagI	CCTNNNNNAGG	1 cut(s)	114
XmiI	GTMKAC	1 cut(s)	64
XspI	CTAG	2 cut(s)	68, 300
ZrmI	AGTACT	1 cut(s)	38
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.