Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Forward (+)

8702464 .. 8705104

Gene Structure 2641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22739

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTATATATGTTATGTTACATTGTGGAAATTCATGGTTTTTTTTTTGAGCCCATCTGTGGATGCAACCAATCCTGGAAACAACTTGTATGTAACAGGCTTATCCACAAGGGTTACCTCTGCTGATGTTGAGAAATTCTTTAACAAAGAATGCAAGGTGTTGGAGTGCCATCTTGTAACTGACCCTCGCTCCAGAGAATCTCGTGGATTTGCATTTGTCACAATGGAAACTGTAGAGGATGCAGAGCGATGCATTAAGTACTTGAATCGCTCTGTGCTTGAAGGTCGACTAGTCACTGTGGAAAAGTTTCTAGGTATATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

107

Amino Acids

12.34

Weight (kDa)

6.57

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	29 - 98	1.6e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	286
AcsI	RAATTY	2 cut(s)	29, 134
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	265, 281
AhlI	ACTAGT	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	73
ApoI	RAATTY	2 cut(s)	29, 134
Asp700I	GAANNNNTTC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	53
BauI	CACGAG	1 cut(s)	201
BccI	CCATC	2 cut(s)	61, 177
BciT130I	CCWGG	1 cut(s)	75
BcuI	ACTAGT	1 cut(s)	289
BfaI	CTAG	2 cut(s)	290, 311
BfmI	CTRYAG	1 cut(s)	231
BmcAI	AGTACT	1 cut(s)	260
Bme1390I	CCNGG	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	3 cut(s)	52, 229, 239
BpmI	CTGGAG	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	67, 244
BseLI	CCNNNNNNNGG	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	53
BssSI	CACGAG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	232, 298
BstEII	GGTNACC	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	67, 244
BstNI	CCWGG	1 cut(s)	75
BstPI	GGTNACC	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	67, 244
BtsIMutI	CAGTG	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	2 cut(s)	51, 99
CviKI_1	RGCY	2 cut(s)	51, 99
CviQI	GTAC	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	53
Eco91I	GGTNACC	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	73
EcoT22I	ATGCAT	1 cut(s)	254
EcoT38I	GRGCYC	1 cut(s)	53
FaeI	CATG	1 cut(s)	37
FaiI	YATR	8 cut(s)	6, 8, 10, 15, 35, 90, 317, 319
FatI	CATG	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	286
FokI	GGATG	2 cut(s)	74, 251
FriOI	GRGCYC	1 cut(s)	53
FspBI	CTAG	2 cut(s)	290, 311
GsuI	CTGGAG	1 cut(s)	175
Hin1II	CATG	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	287
HindII	GTYRAC	1 cut(s)	287
HinfI	GANTC	2 cut(s)	197, 265
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188III	TCNNGA	1 cut(s)	192
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	2 cut(s)	232, 298
HpyCH4V	TGCA	5 cut(s)	65, 153, 212, 242, 252
Hsp92II	CATG	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	4 cut(s)	60, 81, 87, 205
LweI	GCATC	3 cut(s)	52, 229, 239
MaeI	CTAG	2 cut(s)	290, 311
MaeIII	GTNAC	6 cut(s)	16, 91, 112, 175, 217, 292
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	2 cut(s)	29, 134
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	127, 195, 229
Mph1103I	ATGCAT	1 cut(s)	254
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	2 cut(s)	141, 255
MspR9I	CCNGG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	75
NlaIII	CATG	1 cut(s)	37
NmuCI	GTSAC	2 cut(s)	217, 292
NsiI	ATGCAT	1 cut(s)	254
PctI	GAATGC	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	197, 265
PfoI	TCCNGGA	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	73
PspEI	GGTNACC	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	73
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SalI	GTCGAC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	141, 255
ScaI	AGTACT	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	4 cut(s)	119, 159, 286, 316
SfaNI	GCATC	3 cut(s)	52, 229, 239
SfcI	CTRYAG	1 cut(s)	231
SpeI	ACTAGT	1 cut(s)	289
Sse9I	AATT	2 cut(s)	29, 134
SspMI	CTAG	2 cut(s)	290, 311
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	232, 298
TaqI	TCGA	1 cut(s)	286
TasI	AATT	2 cut(s)	29, 134
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	2 cut(s)	197, 265
Tru1I	TTAA	2 cut(s)	141, 255
Tru9I	TTAA	2 cut(s)	141, 255
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	2 cut(s)	217, 292
Tsp45I	GTSAC	2 cut(s)	217, 292
TspDTI	ATGAA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	301
XapI	RAATTY	2 cut(s)	29, 134
XmiI	GTMKAC	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	2 cut(s)	290, 311
ZrmI	AGTACT	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.