Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Forward (+)

13689716 .. 13693309

Gene Structure 3594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G014190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCCATACACGAGAGCAAAAAGGTCTGCTTCACCACAGACCTCTGTCTCACCTGTCAAAGGCCGCCGATCGAGATCATTGTCGAGGTCTAGAAGGAGTCGTTCTAGGAGCCCATCTGTGGATGCAACCAATCCTGGAAACAACTTGTATGTAACAGGCTTATCCACAAGGGTTACCTCTGCTGATGTGTTGGAGTGCCATCTTGTAACTGACCCTCGCTCCAGAGAATCTCGTGGATTTGCATTTGTCACAATGGAAACTGTGGAGGATGCAGAGCGATGCATTAAGTACTTGAATCGTTCTGTGCTTGAAGGTCGACTAGTCACTGTGGAAAAGGCAAAGAGGAAGCGAGGGAGGACACCTACTCCAGGAAGGTATCAAGGCTTGAGAGATAAGCGAGATGCAGGACGTGATCGTGGAGATCGTGATTATGGTGATCGTGACCGTGACCGTGATCGTAGAAGATCTCGTAGCTATTCACCTCGTAGGCGGAAAGACAGAGAGCCTCCTTCCAGGGACAACCGCCGAGGAAGATCACGTTCTCCACCAGCTAGGGATAGGAGGGTGGATGAGCATTCAGACTCGTATAGGAGGCGCATGGATCACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

203

Amino Acids

23.65

Weight (kDa)

11.45

Isoelectric Point (pI)

95.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	62 - 108	9.7e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	316
AciI	CCGC	3 cut(s)	64, 490, 523
AclWI	GGATC	1 cut(s)	609
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	3 cut(s)	59, 118, 368
AgsI	TTSAA	2 cut(s)	295, 311
AhlI	ACTAGT	1 cut(s)	319
AjiI	CACGTC	1 cut(s)	410
AjnI	CCWGG	3 cut(s)	133, 367, 512
AluBI	AGCT	2 cut(s)	474, 551
AluI	AGCT	2 cut(s)	474, 551
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	609
AoxI	GGCC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	597
AsuHPI	GGTGA	4 cut(s)	24, 42, 446, 471
BanII	GRGCYC	1 cut(s)	113
BauI	CACGAG	2 cut(s)	10, 231
BccI	CCATC	2 cut(s)	121, 207
BciT130I	CCWGG	3 cut(s)	135, 369, 514
BcoDI	GTCTC	1 cut(s)	52
BcuI	ACTAGT	1 cut(s)	319
BfaI	CTAG	4 cut(s)	90, 105, 320, 552
BglII	AGATCT	1 cut(s)	464
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	3 cut(s)	135, 369, 514
BmgBI	CACGTC	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	3 cut(s)	135, 369, 514
BmsI	GCATC	4 cut(s)	112, 259, 269, 391
BoxI	GACNNNNGTC	1 cut(s)	44
BpmI	CTGGAG	2 cut(s)	205, 351
BpuEI	CTTGAG	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	513, 526
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 349, 379
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 118, 368
Bse8I	GATNNNNATC	1 cut(s)	73
BseBI	CCWGG	3 cut(s)	135, 369, 514
BseDI	CCNNGG	2 cut(s)	513, 526
BseGI	GGATG	3 cut(s)	127, 274, 574
BseJI	GATNNNNATC	1 cut(s)	73
BseLI	CCNNNNNNNGG	3 cut(s)	59, 118, 368
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	3 cut(s)	59, 118, 368
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	530
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	9 cut(s)	68, 74, 412, 421, 436, 454, 464, 533, 601
BspACI	CCGC	3 cut(s)	64, 490, 523
BspANI	GGCC	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	609
BssECI	CCNNGG	2 cut(s)	513, 526
BssMI	GATC	9 cut(s)	68, 74, 412, 421, 436, 454, 464, 533, 601
BssSI	CACGAG	2 cut(s)	10, 231
Bst2BI	CACGAG	2 cut(s)	10, 231
Bst2UI	CCWGG	3 cut(s)	135, 369, 514
Bst4CI	ACNGT	4 cut(s)	262, 328, 446, 452
BstEII	GGTNACC	1 cut(s)	172
BstENI	CCTNNNNNAGG	2 cut(s)	57, 366
BstF5I	GGATG	3 cut(s)	127, 274, 574
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	9 cut(s)	71, 77, 415, 424, 439, 457, 467, 536, 604
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	9 cut(s)	68, 74, 412, 421, 436, 454, 464, 533, 601
BstMCI	CGRYCG	1 cut(s)	71
BstNI	CCWGG	3 cut(s)	135, 369, 514
BstPAI	GACNNNNGTC	1 cut(s)	44
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	3 cut(s)	133, 367, 512
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuRI	GGCC	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	292
BtrI	CACGTC	1 cut(s)	410
BtsCI	GGATG	3 cut(s)	127, 274, 574
BtsIMutI	CAGTG	1 cut(s)	324
CfoI	GCGC	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	1 cut(s)	598
CviJI	RGCY	7 cut(s)	63, 111, 159, 384, 474, 505, 551
CviKI_1	RGCY	7 cut(s)	63, 111, 159, 384, 474, 505, 551
CviQI	GTAC	1 cut(s)	289
DpnI	GATC	9 cut(s)	70, 76, 414, 423, 438, 456, 466, 535, 603
DpnII	GATC	9 cut(s)	68, 74, 412, 421, 436, 454, 464, 533, 601
EciI	GGCGGA	1 cut(s)	505
Eco24I	GRGCYC	1 cut(s)	113
Eco91I	GGTNACC	1 cut(s)	172
EcoNI	CCTNNNNNAGG	2 cut(s)	57, 366
EcoO65I	GGTNACC	1 cut(s)	172
EcoRII	CCWGG	3 cut(s)	133, 367, 512
EcoT22I	ATGCAT	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	113
FaeI	CATG	1 cut(s)	601
FaiI	YATR	5 cut(s)	7, 150, 432, 588, 599
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	1 cut(s)	597
FblI	GTMKAC	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	3 cut(s)	134, 281, 581
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	4 cut(s)	90, 105, 320, 552
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	1 cut(s)	64
GsuI	CTGGAG	2 cut(s)	205, 351
HaeIII	GGCC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	597
Hin1II	CATG	1 cut(s)	601
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HincII	GTYRAC	1 cut(s)	317
HindII	GTYRAC	1 cut(s)	317
HinfI	GANTC	4 cut(s)	97, 227, 295, 581
HphI	GGTGA	4 cut(s)	24, 42, 446, 471
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	1 cut(s)	580
Hpy188III	TCNNGA	6 cut(s)	72, 90, 222, 425, 440, 609
Hpy8I	GTNNAC	1 cut(s)	317
HpyAV	CCTTC	4 cut(s)	87, 305, 366, 519
HpyCH4III	ACNGT	4 cut(s)	262, 328, 446, 452
HpyCH4IV	ACGT	2 cut(s)	409, 538
HpyCH4V	TGCA	5 cut(s)	125, 242, 272, 282, 404
HpySE526I	ACGT	2 cut(s)	409, 538
Hsp92II	CATG	1 cut(s)	601
HspAI	GCGC	1 cut(s)	595
Kzo9I	GATC	9 cut(s)	68, 74, 412, 421, 436, 454, 464, 533, 601
LmnI	GCTCC	2 cut(s)	108, 224
LweI	GCATC	4 cut(s)	112, 259, 269, 391
MaeI	CTAG	4 cut(s)	90, 105, 320, 552
MaeII	ACGT	2 cut(s)	409, 538
MaeIII	GTNAC	7 cut(s)	151, 172, 205, 247, 322, 440, 446
MalI	GATC	9 cut(s)	70, 76, 414, 423, 438, 456, 466, 535, 603
MboI	GATC	9 cut(s)	68, 74, 412, 421, 436, 454, 464, 533, 601
MboII	GAAGA	2 cut(s)	474, 543
MflI	RGATCY	1 cut(s)	464
MhlI	GDGCHC	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	106, 575
MmeI	TCCRAC	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	284
MseI	TTAA	1 cut(s)	285
MspR9I	CCNGG	3 cut(s)	135, 369, 514
Mva1269I	GAATGC	1 cut(s)	574
MvaI	CCWGG	3 cut(s)	135, 369, 514
NdeII	GATC	9 cut(s)	68, 74, 412, 421, 436, 454, 464, 533, 601
NlaIII	CATG	1 cut(s)	601
NlaIV	GGNNCC	1 cut(s)	110
NmeAIII	GCCGAG	1 cut(s)	551
NmuCI	GTSAC	4 cut(s)	247, 322, 440, 446
NsiI	ATGCAT	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	421
PctI	GAATGC	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	227, 295
PfoI	TCCNGGA	2 cut(s)	133, 367
PkrI	GCNGC	1 cut(s)	65
Ple19I	CGATCG	1 cut(s)	71
PleI	GAGTC	2 cut(s)	105, 575
PpsI	GAGTC	2 cut(s)	105, 575
PshAI	GACNNNNGTC	1 cut(s)	44
Psp6I	CCWGG	3 cut(s)	133, 367, 512
PspEI	GGTNACC	1 cut(s)	172
PspGI	CCWGG	3 cut(s)	133, 367, 512
PspN4I	GGNNCC	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	464
PvuI	CGATCG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SalI	GTCGAC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	9 cut(s)	68, 74, 412, 421, 436, 454, 464, 533, 601
ScaI	AGTACT	1 cut(s)	290
SchI	GAGTC	2 cut(s)	106, 575
ScrFI	CCNGG	3 cut(s)	135, 369, 514
SduI	GDGCHC	1 cut(s)	113
SfaNI	GCATC	4 cut(s)	112, 259, 269, 391
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
SpeI	ACTAGT	1 cut(s)	319
SsiI	CCGC	3 cut(s)	64, 490, 523
SspMI	CTAG	4 cut(s)	90, 105, 320, 552
StyD4I	CCNGG	3 cut(s)	133, 367, 512
TaaI	ACNGT	4 cut(s)	262, 328, 446, 452
TaiI	ACGT	2 cut(s)	412, 541
TaqI	TCGA	3 cut(s)	71, 83, 316
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	227, 295
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	4 cut(s)	247, 322, 440, 446
Tsp45I	GTSAC	4 cut(s)	247, 322, 440, 446
TspRI	CASTG	1 cut(s)	331
XagI	CCTNNNNNAGG	2 cut(s)	57, 366
XbaI	TCTAGA	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	316
XspI	CTAG	4 cut(s)	90, 105, 320, 552
ZrmI	AGTACT	1 cut(s)	290
Zsp2I	ATGCAT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.