Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Forward (+)

17477430 .. 17481114

Gene Structure 3685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G175500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGGATTCTCCTCGCAAAAAGTACTCACGATCCCCTTCTCCGTGGAGAGCTCAGTCCAGGTCCAGGTCCAGGTCTTGGTCTAGGCCTAGGTCAAGGTCAAGATCTTGGTCTAGGCCAAGGCAGAGTTCTCACTCTAGAAGTCGTGGCAGATCAAGGTCCAGAAGTCCTGGCAGGCCTGCTGCTATAAATCCTGGAAATACACTGTATGTGACTGGCTTATCAACAAGGGTCTCAGAGAAGGATGTTGAAAGGCATTTTTCAAAGGAGGGGAAGGTAGCCTCATGCTTTCTTGTTGTGGAGCCCCGCACTCGAATTTCTCGTGGTTTTGCCTTTGTTACTATGGACTCTGTTGAAGATGCTGAACGGTGCATTAAACATCTCAACCAGTCAGTTCTGGAAGGTCGATACATCACTGTTGAGAGGTCTCGGAGGAAGCGGCCAAGAACTCCAACACCTGGGCATTATCTTGGGTTGAAAAATACTAGAGACTATGGTTATCGAGGTGATCGGGATGGGGATCGGGATCGGGATCGTGGTAGGTATCGTGGGGGCTCAGGTCGTGATGACTATGGATATCGGAGGTCTCCAAGGCGCTCACCGTACAGAGGTGGCCGTGATTATTCTCCTAGGGGTTCACCTTATGGCGGAAGATCTAGAAGGGAGAGGTCTTATTCTCCCTATGGCAGCCCTGAAAGGAAGTATGCTCGTGGCTCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 RRM_1

Protein Analysis

241

Amino Acids

27.83

Weight (kDa)

11.5

Isoelectric Point (pI)

88.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	78, 458
AciI	CCGC	4 cut(s)	5, 307, 439, 648
AclWI	GGATC	4 cut(s)	27, 528, 534, 540
AcoI	YGGCCR	2 cut(s)	440, 613
AcsI	RAATTY	1 cut(s)	315
AfaI	GTAC	2 cut(s)	26, 605
AfiI	CCNNNNNNNGG	6 cut(s)	66, 72, 78, 458, 608, 647
AgsI	TTSAA	4 cut(s)	251, 264, 356, 478
AjnI	CCWGG	6 cut(s)	59, 65, 71, 169, 193, 457
AjuI	GAANNNNNNNTTGG	2 cut(s)	112, 144
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	4 cut(s)	238, 432, 483, 591
AlwI	GGATC	4 cut(s)	27, 528, 534, 540
AoxI	GGCC	5 cut(s)	86, 116, 176, 440, 613
ApeKI	GCWGC	2 cut(s)	182, 687
ApoI	RAATTY	1 cut(s)	315
AspA2I	CCTAGG	2 cut(s)	89, 629
AspLEI	GCGC	1 cut(s)	597
AspS9I	GGNCC	3 cut(s)	63, 69, 159
AsuHPI	GGTGA	3 cut(s)	518, 591, 630
AvaII	GGWCC	3 cut(s)	63, 69, 159
AvrII	CCTAGG	2 cut(s)	89, 629
BanII	GRGCYC	3 cut(s)	55, 306, 557
BauI	CACGAG	2 cut(s)	321, 708
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	2 cut(s)	169, 699
BccI	CCATC	1 cut(s)	509
BceAI	ACGGC	1 cut(s)	600
BciT130I	CCWGG	6 cut(s)	61, 67, 73, 171, 195, 459
BcoDI	GTCTC	4 cut(s)	238, 432, 483, 591
BfaI	CTAG	8 cut(s)	84, 90, 114, 138, 486, 630, 657, 717
BfoI	RGCGCY	1 cut(s)	598
BglII	AGATCT	2 cut(s)	104, 653
BisI	GCNGC	3 cut(s)	183, 440, 688
BlnI	CCTAGG	2 cut(s)	89, 629
BlsI	GCNGC	3 cut(s)	184, 441, 689
BmcAI	AGTACT	1 cut(s)	26
Bme1390I	CCNGG	6 cut(s)	61, 67, 73, 171, 195, 459
Bme18I	GGWCC	3 cut(s)	63, 69, 159
BmgT120I	GGNCC	3 cut(s)	63, 69, 159
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	6 cut(s)	61, 67, 73, 171, 195, 459
BmsI	GCATC	1 cut(s)	349
Bpu10I	CCTNAGC	1 cut(s)	556
BsaBI	GATNNNNATC	3 cut(s)	519, 525, 531
BsaI	GGTCTC	3 cut(s)	238, 432, 591
BsaJI	CCNNGG	6 cut(s)	44, 89, 119, 458, 590, 629
Bsc4I	CCNNNNNNNGG	6 cut(s)	66, 72, 78, 458, 608, 647
Bse1I	ACTGG	2 cut(s)	220, 388
Bse8I	GATNNNNATC	3 cut(s)	519, 525, 531
BseBI	CCWGG	6 cut(s)	61, 67, 73, 171, 195, 459
BseDI	CCNNGG	6 cut(s)	44, 89, 119, 458, 590, 629
BseGI	GGATG	2 cut(s)	250, 520
BseJI	GATNNNNATC	3 cut(s)	519, 525, 531
BseLI	CCNNNNNNNGG	6 cut(s)	66, 72, 78, 458, 608, 647
BseMII	CTCAG	3 cut(s)	68, 249, 570
BseNI	ACTGG	2 cut(s)	220, 388
BseXI	GCAGC	2 cut(s)	169, 699
BshFI	GGCC	5 cut(s)	88, 118, 178, 442, 615
BsiHKAI	GWGCWC	1 cut(s)	55
BslI	CCNNNNNNNGG	6 cut(s)	66, 72, 78, 458, 608, 647
BsmAI	GTCTC	4 cut(s)	238, 432, 483, 591
BsnI	GGCC	5 cut(s)	88, 118, 178, 442, 615
Bso31I	GGTCTC	3 cut(s)	238, 432, 591
Bsp1286I	GDGCHC	3 cut(s)	55, 306, 557
Bsp143I	GATC	8 cut(s)	32, 104, 152, 508, 520, 526, 532, 653
BspACI	CCGC	4 cut(s)	5, 307, 439, 648
BspANI	GGCC	5 cut(s)	88, 118, 178, 442, 615
BspCNI	CTCAG	3 cut(s)	67, 248, 569
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	4 cut(s)	27, 528, 534, 540
BspTNI	GGTCTC	3 cut(s)	238, 432, 591
BsrI	ACTGG	2 cut(s)	220, 388
BssECI	CCNNGG	6 cut(s)	44, 89, 119, 458, 590, 629
BssMI	GATC	8 cut(s)	32, 104, 152, 508, 520, 526, 532, 653
BssSI	CACGAG	2 cut(s)	321, 708
BssT1I	CCWWGG	4 cut(s)	89, 119, 590, 629
Bst2BI	CACGAG	2 cut(s)	321, 708
Bst2UI	CCWGG	6 cut(s)	61, 67, 73, 171, 195, 459
Bst4CI	ACNGT	4 cut(s)	207, 369, 418, 603
BstC8I	GCNNGC	2 cut(s)	176, 180
BstDEI	CTNAG	3 cut(s)	54, 235, 556
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	250, 520
BstH2I	RGCGCY	1 cut(s)	598
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	8 cut(s)	35, 107, 155, 511, 523, 529, 535, 656
BstMAI	GTCTC	4 cut(s)	238, 432, 483, 591
BstMBI	GATC	8 cut(s)	32, 104, 152, 508, 520, 526, 532, 653
BstNI	CCWGG	6 cut(s)	61, 67, 73, 171, 195, 459
BstSCI	CCNGG	6 cut(s)	59, 65, 71, 169, 193, 457
BstV1I	GCAGC	2 cut(s)	169, 699
BstX2I	RGATCY	2 cut(s)	104, 653
BstYI	RGATCY	2 cut(s)	104, 653
BsuRI	GGCC	5 cut(s)	88, 118, 178, 442, 615
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	250, 520
BtsIMutI	CAGTG	2 cut(s)	203, 414
Cac8I	GCNNGC	2 cut(s)	176, 180
CfoI	GCGC	1 cut(s)	597
Cfr13I	GGNCC	3 cut(s)	63, 69, 159
Csp6I	GTAC	2 cut(s)	25, 604
CviAII	CATG	1 cut(s)	285
CviQI	GTAC	2 cut(s)	25, 604
DdeI	CTNAG	3 cut(s)	54, 235, 556
DpnI	GATC	8 cut(s)	34, 106, 154, 510, 522, 528, 534, 655
DpnII	GATC	8 cut(s)	32, 104, 152, 508, 520, 526, 532, 653
EaeI	YGGCCR	2 cut(s)	440, 613
EciI	GGCGGA	2 cut(s)	20, 663
Ecl136II	GAGCTC	1 cut(s)	53
Eco130I	CCWWGG	4 cut(s)	89, 119, 590, 629
Eco147I	AGGCCT	2 cut(s)	88, 178
Eco24I	GRGCYC	3 cut(s)	55, 306, 557
Eco31I	GGTCTC	3 cut(s)	238, 432, 591
Eco32I	GATATC	1 cut(s)	578
Eco47I	GGWCC	3 cut(s)	63, 69, 159
Eco53kI	GAGCTC	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	53
EcoRII	CCWGG	6 cut(s)	59, 65, 71, 169, 193, 457
EcoRV	GATATC	1 cut(s)	578
EcoT14I	CCWWGG	4 cut(s)	89, 119, 590, 629
EcoT38I	GRGCYC	3 cut(s)	55, 306, 557
ErhI	CCWWGG	4 cut(s)	89, 119, 590, 629
FaeI	CATG	1 cut(s)	288
FaiI	YATR	9 cut(s)	188, 210, 286, 344, 495, 573, 645, 684, 705
FatI	CATG	1 cut(s)	284
FauI	CCCGC	1 cut(s)	314
Fnu4HI	GCNGC	3 cut(s)	183, 440, 688
FokI	GGATG	2 cut(s)	257, 527
FriOI	GRGCYC	3 cut(s)	55, 306, 557
Fsp4HI	GCNGC	3 cut(s)	183, 440, 688
FspBI	CTAG	8 cut(s)	84, 90, 114, 138, 486, 630, 657, 717
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	3 cut(s)	183, 440, 688
HaeII	RGCGCY	1 cut(s)	598
HaeIII	GGCC	5 cut(s)	88, 118, 178, 442, 615
HhaI	GCGC	1 cut(s)	597
Hin1II	CATG	1 cut(s)	288
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HinfI	GANTC	2 cut(s)	8, 347
HphI	GGTGA	3 cut(s)	518, 591, 630
Hpy166II	GTNNAC	1 cut(s)	638
Hpy188I	TCNGA	3 cut(s)	238, 432, 582
Hpy8I	GTNNAC	1 cut(s)	638
HpyAV	CCTTC	5 cut(s)	48, 235, 268, 395, 654
HpyCH4III	ACNGT	4 cut(s)	207, 369, 418, 603
HpyCH4V	TGCA	1 cut(s)	372
HpyF3I	CTNAG	3 cut(s)	54, 235, 556
Hsp92II	CATG	1 cut(s)	288
HspAI	GCGC	1 cut(s)	595
Kzo9I	GATC	8 cut(s)	32, 104, 152, 508, 520, 526, 532, 653
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	2 cut(s)	169, 699
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	8 cut(s)	84, 90, 114, 138, 486, 630, 657, 717
MaeIII	GTNAC	2 cut(s)	211, 337
MalI	GATC	8 cut(s)	34, 106, 154, 510, 522, 528, 534, 655
MboI	GATC	8 cut(s)	32, 104, 152, 508, 520, 526, 532, 653
MboII	GAAGA	2 cut(s)	368, 663
MflI	RGATCY	2 cut(s)	104, 653
MhlI	GDGCHC	3 cut(s)	55, 306, 557
MluCI	AATT	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	9 cut(s)	24, 262, 292, 417, 426, 497, 576, 602, 660
MseI	TTAA	1 cut(s)	375
MspR9I	CCNGG	6 cut(s)	61, 67, 73, 171, 195, 459
MvaI	CCWGG	6 cut(s)	61, 67, 73, 171, 195, 459
NdeII	GATC	8 cut(s)	32, 104, 152, 508, 520, 526, 532, 653
NlaIII	CATG	1 cut(s)	288
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	211
PceI	AGGCCT	2 cut(s)	88, 178
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	8
PflMI	CCANNNNNTGG	2 cut(s)	78, 458
PfoI	TCCNGGA	1 cut(s)	193
PkrI	GCNGC	3 cut(s)	184, 441, 689
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	55
Psp6I	CCWGG	6 cut(s)	59, 65, 71, 169, 193, 457
PspGI	CCWGG	6 cut(s)	59, 65, 71, 169, 193, 457
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	3 cut(s)	63, 69, 159
PsuI	RGATCY	2 cut(s)	104, 653
RsaI	GTAC	2 cut(s)	26, 605
RsaNI	GTAC	2 cut(s)	25, 604
SacI	GAGCTC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	3 cut(s)	183, 440, 688
Sau3AI	GATC	8 cut(s)	32, 104, 152, 508, 520, 526, 532, 653
Sau96I	GGNCC	3 cut(s)	63, 69, 159
ScaI	AGTACT	1 cut(s)	26
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	6 cut(s)	61, 67, 73, 171, 195, 459
SduI	GDGCHC	3 cut(s)	55, 306, 557
SfaNI	GCATC	1 cut(s)	349
SinI	GGWCC	3 cut(s)	63, 69, 159
Sse9I	AATT	1 cut(s)	315
SseBI	AGGCCT	2 cut(s)	88, 178
SsiI	CCGC	4 cut(s)	5, 307, 439, 648
SspMI	CTAG	8 cut(s)	84, 90, 114, 138, 486, 630, 657, 717
SstI	GAGCTC	1 cut(s)	55
StuI	AGGCCT	2 cut(s)	88, 178
StyD4I	CCNGG	6 cut(s)	59, 65, 71, 169, 193, 457
StyI	CCWWGG	4 cut(s)	89, 119, 590, 629
TaaI	ACNGT	4 cut(s)	207, 369, 418, 603
TaqI	TCGA	3 cut(s)	313, 406, 502
TasI	AATT	1 cut(s)	315
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	1 cut(s)	442
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	2 cut(s)	210, 421
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	182, 687
Tsp45I	GTSAC	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	2 cut(s)	210, 421
Van91I	CCANNNNNTGG	2 cut(s)	78, 458
VpaK11BI	GGWCC	3 cut(s)	63, 69, 159
XapI	RAATTY	1 cut(s)	315
XbaI	TCTAGA	3 cut(s)	137, 656, 716
XmaJI	CCTAGG	2 cut(s)	89, 629
XspI	CTAG	8 cut(s)	84, 90, 114, 138, 486, 630, 657, 717
ZrmI	AGTACT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.