Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

21451067 .. 21454819

Gene Structure 3753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1087700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCCATACCCAAGAGAAAGAAGGTCCGCTTCGCCACACAACTCTCCTTCACCCGTCAGAGGCCGCCGGTTGAGATCATCGTCGAGGTCTAGGAGAAGTCGTTCTAGGAGCCATGAATCTGTCGATGCATCCAATCCTGGAAACAACTTGTACATAACAGGCTTATCCACAAGGGTTACCTCTACTGATCTTGAGAAATTTTTTAATAAACAGGGGAAGGTACTGGACTGCCATCTGGTTACAGACCCTCGCACCAGAGAATCCCGTGGATTTGGCTTTGTCACAATGGAAACTGTTGAGGATGCAGAACGCTGCATCAAATATTTGGATCGGTCTGTGCTTGAAGGTCGATTAGTTACAGTGGAAAAGGCAAAAAGGAAACGAGGGAGGACTCCAACTCCAGGAAGGTATCAAGGTTTGAGAGATAAACGAGATGCAGGACGTGATCGTGATCGTGATTGTGACCGTAGACGATCTCGAAGCTATTCACCTCGTAGGTTGCAAGACAGAGATCCTTATCCCAGGGACCGCCGAGGAAGATCACGCTCTCCATATGGTAGGAGGGCGGATGAACACTCGGACTCATACAGGAGGCGCAGGGAACGCTCCTTGTCAGGGGGCAGAAACCCTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

212

Amino Acids

24.75

Weight (kDa)

11.39

Isoelectric Point (pI)

95.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	50 - 119	1.1e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	469
AciI	CCGC	4 cut(s)	27, 64, 529, 566
AclWI	GGATC	2 cut(s)	336, 506
AcsI	RAATTY	1 cut(s)	197
AfaI	GTAC	2 cut(s)	152, 222
AfiI	CCNNNNNNNGG	3 cut(s)	59, 401, 615
AgsI	TTSAA	1 cut(s)	344
AjiI	CACGTC	1 cut(s)	443
AjnI	CCWGG	3 cut(s)	136, 400, 521
AloI	GAACNNNNNNTCC	2 cut(s)	85, 117
AluBI	AGCT	1 cut(s)	483
AluI	AGCT	1 cut(s)	483
AlwI	GGATC	2 cut(s)	336, 506
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	1 cut(s)	197
Asp700I	GAANNNNTTC	2 cut(s)	100, 484
AspLEI	GCGC	1 cut(s)	597
AspS9I	GGNCC	2 cut(s)	24, 526
AsuHPI	GGTGA	2 cut(s)	42, 480
AvaII	GGWCC	2 cut(s)	24, 526
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	1 cut(s)	240
BciT130I	CCWGG	3 cut(s)	138, 402, 523
BfaI	CTAG	3 cut(s)	90, 105, 630
BisI	GCNGC	2 cut(s)	64, 313
BlsI	GCNGC	2 cut(s)	65, 314
Bme1390I	CCNGG	3 cut(s)	138, 402, 523
Bme18I	GGWCC	2 cut(s)	24, 526
BmgBI	CACGTC	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	24, 526
BmiI	GGNNCC	2 cut(s)	110, 527
BmrFI	CCNGG	3 cut(s)	138, 402, 523
BmsI	GCATC	5 cut(s)	115, 137, 292, 324, 424
BpmI	CTGGAG	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	212
BsaBI	GATNNNNATC	2 cut(s)	450, 516
BsaJI	CCNNGG	4 cut(s)	265, 521, 522, 532
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 115, 382, 412
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 401, 615
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	228
Bse8I	GATNNNNATC	2 cut(s)	450, 516
BseBI	CCWGG	3 cut(s)	138, 402, 523
BseDI	CCNNGG	4 cut(s)	265, 521, 522, 532
BseGI	GGATG	3 cut(s)	128, 307, 574
BseJI	GATNNNNATC	2 cut(s)	450, 516
BseLI	CCNNNNNNNGG	3 cut(s)	59, 401, 615
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	299
BshFI	GGCC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	539
BslI	CCNNNNNNNGG	3 cut(s)	59, 401, 615
BsmFI	GGGAC	1 cut(s)	539
BsnI	GGCC	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	8 cut(s)	74, 187, 328, 445, 451, 473, 511, 539
BspACI	CCGC	4 cut(s)	27, 64, 529, 566
BspANI	GGCC	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	110, 527
BspPI	GGATC	2 cut(s)	336, 506
BsrFI	RCCGGY	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	4 cut(s)	265, 521, 522, 532
BssMI	GATC	8 cut(s)	74, 187, 328, 445, 451, 473, 511, 539
Bst2UI	CCWGG	3 cut(s)	138, 402, 523
Bst4CI	ACNGT	3 cut(s)	295, 361, 467
BstAUI	TGTACA	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	265
BstEII	GGTNACC	1 cut(s)	175
BstF5I	GGATG	3 cut(s)	128, 307, 574
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	8 cut(s)	77, 190, 331, 448, 454, 476, 514, 542
BstMBI	GATC	8 cut(s)	74, 187, 328, 445, 451, 473, 511, 539
BstMWI	GCNNNNNNNGC	1 cut(s)	603
BstNI	CCWGG	3 cut(s)	138, 402, 523
BstPI	GGTNACC	1 cut(s)	175
BstSCI	CCNGG	3 cut(s)	136, 400, 521
BstV1I	GCAGC	1 cut(s)	299
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	265
BtrI	CACGTC	1 cut(s)	443
BtsCI	GGATG	3 cut(s)	128, 307, 574
BtsIMutI	CAGTG	1 cut(s)	366
CfoI	GCGC	1 cut(s)	597
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	24, 526
Csp6I	GTAC	2 cut(s)	151, 221
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	5 cut(s)	63, 111, 162, 276, 483
CviKI_1	RGCY	5 cut(s)	63, 111, 162, 276, 483
CviQI	GTAC	2 cut(s)	151, 221
DpnI	GATC	8 cut(s)	76, 189, 330, 447, 453, 475, 513, 541
DpnII	GATC	8 cut(s)	74, 187, 328, 445, 451, 473, 511, 539
EciI	GGCGGA	1 cut(s)	581
Eco47I	GGWCC	2 cut(s)	24, 526
Eco91I	GGTNACC	1 cut(s)	175
EcoO65I	GGTNACC	1 cut(s)	175
EcoRII	CCWGG	3 cut(s)	136, 400, 521
EcoT22I	ATGCAT	1 cut(s)	130
FaeI	CATG	1 cut(s)	116
FaiI	YATR	6 cut(s)	7, 114, 155, 553, 555, 586
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FaqI	GGGAC	1 cut(s)	539
FatI	CATG	1 cut(s)	112
FauNDI	CATATG	1 cut(s)	553
FblI	GTMKAC	1 cut(s)	469
Fnu4HI	GCNGC	2 cut(s)	64, 313
FokI	GGATG	3 cut(s)	115, 314, 581
Fsp4HI	GCNGC	2 cut(s)	64, 313
FspBI	CTAG	3 cut(s)	90, 105, 630
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	2 cut(s)	64, 313
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	67
HhaI	GCGC	1 cut(s)	597
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HinfI	GANTC	4 cut(s)	116, 260, 391, 581
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	2 cut(s)	42, 480
Hpy166II	GTNNAC	1 cut(s)	470
Hpy188I	TCNGA	2 cut(s)	59, 580
Hpy188III	TCNNGA	4 cut(s)	191, 449, 455, 477
Hpy8I	GTNNAC	1 cut(s)	470
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	5 cut(s)	15, 57, 211, 338, 399
HpyCH4III	ACNGT	3 cut(s)	295, 361, 467
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	5 cut(s)	128, 305, 315, 437, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	603
HpySE526I	ACGT	1 cut(s)	442
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	1 cut(s)	595
Kzo9I	GATC	8 cut(s)	74, 187, 328, 445, 451, 473, 511, 539
LmnI	GCTCC	2 cut(s)	108, 611
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	5 cut(s)	115, 137, 292, 324, 424
MaeI	CTAG	3 cut(s)	90, 105, 630
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	5 cut(s)	175, 238, 280, 355, 461
MalI	GATC	8 cut(s)	76, 189, 330, 447, 453, 475, 513, 541
MboI	GATC	8 cut(s)	74, 187, 328, 445, 451, 473, 511, 539
MboII	GAAGA	1 cut(s)	549
MflI	RGATCY	1 cut(s)	511
MluCI	AATT	1 cut(s)	197
MlyI	GAGTC	2 cut(s)	385, 575
MmeI	TCCRAC	1 cut(s)	419
Mph1103I	ATGCAT	1 cut(s)	130
MroXI	GAANNNNTTC	2 cut(s)	100, 484
MseI	TTAA	1 cut(s)	204
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	3 cut(s)	138, 402, 523
MvaI	CCWGG	3 cut(s)	138, 402, 523
MwoI	GCNNNNNNNGC	1 cut(s)	603
NdeI	CATATG	1 cut(s)	553
NdeII	GATC	8 cut(s)	74, 187, 328, 445, 451, 473, 511, 539
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	2 cut(s)	110, 527
NmeAIII	GCCGAG	1 cut(s)	557
NmuCI	GTSAC	2 cut(s)	280, 461
NsiI	ATGCAT	1 cut(s)	130
PasI	CCCWGGG	1 cut(s)	522
PdmI	GAANNNNTTC	2 cut(s)	100, 484
PfeI	GAWTC	2 cut(s)	116, 260
PfoI	TCCNGGA	2 cut(s)	136, 400
PkrI	GCNGC	2 cut(s)	65, 314
PleI	GAGTC	2 cut(s)	385, 575
PpsI	GAGTC	2 cut(s)	385, 575
Psp6I	CCWGG	3 cut(s)	136, 400, 521
PspEI	GGTNACC	1 cut(s)	175
PspGI	CCWGG	3 cut(s)	136, 400, 521
PspN4I	GGNNCC	2 cut(s)	110, 527
PspPI	GGNCC	2 cut(s)	24, 526
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	2 cut(s)	152, 222
RsaNI	GTAC	2 cut(s)	151, 221
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	64, 313
Sau3AI	GATC	8 cut(s)	74, 187, 328, 445, 451, 473, 511, 539
Sau96I	GGNCC	2 cut(s)	24, 526
SchI	GAGTC	2 cut(s)	385, 575
ScrFI	CCNGG	3 cut(s)	138, 402, 523
SfaNI	GCATC	5 cut(s)	115, 137, 292, 324, 424
SinI	GGWCC	2 cut(s)	24, 526
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	4 cut(s)	27, 64, 529, 566
SspI	AATATT	1 cut(s)	323
SspMI	CTAG	3 cut(s)	90, 105, 630
StyD4I	CCNGG	3 cut(s)	136, 400, 521
TaaI	ACNGT	3 cut(s)	295, 361, 467
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	4 cut(s)	83, 123, 349, 478
TaqII	GACCGA	1 cut(s)	321
TasI	AATT	1 cut(s)	197
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	116, 260
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	366
TseFI	GTSAC	2 cut(s)	280, 461
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	2 cut(s)	280, 461
TspDTI	ATGAA	2 cut(s)	129, 585
TspRI	CASTG	1 cut(s)	366
VpaK11BI	GGWCC	2 cut(s)	24, 526
XapI	RAATTY	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	469
XmnI	GAANNNNTTC	2 cut(s)	100, 484
XspI	CTAG	3 cut(s)	90, 105, 630
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.