Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

29887518 .. 29888943

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGTTACCAAAAACAGAACTTTCACTTGGCCTATATGGTCATACACGAGAGCAAAAAGGTCTGCTTCACCACAGACCTCTGTCTCACCTGTCAAAGGCCGCCGATCGAGATCATTGTCGAGGTCTAGAAGGAGTCGTTCTAGGTACACTGGAAATCTCAATTTTCTAACTGAGCCCATCTGTGGATGCAACCAATCCTGGAAACAACTGTATGTAACAGGCTTATCCACAAGGGTTACCTCTGCTGATGTTGAGAAATTCTTTAACAAAGAAGGCAAGGTGTTGGAGTGCCATCTTGTAACTGACCCTCGCTCCAGAGAATCTCGTGGATTTGCATTTGTCACAATGGAAACTGTAGAGGATGCAGAGCGATGCATTAAGTACTTGAATCGTTCTGTGCTTGAAGGTCGACTAGTCACTGTGGAAAAGGTATCAGTTTCTGTCAAAGGATCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

152

Amino Acids

17.39

Weight (kDa)

10.49

Isoelectric Point (pI)

63.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	70 - 139	4e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	409
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	457
AcsI	RAATTY	1 cut(s)	257
AfaI	GTAC	2 cut(s)	146, 383
AfiI	CCNNNNNNNGG	2 cut(s)	95, 182
AgsI	TTSAA	2 cut(s)	388, 404
AhlI	ACTAGT	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	197
AjuI	GAANNNNNNNTTGG	2 cut(s)	10, 42
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	457
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	2 cut(s)	29, 97
ApoI	RAATTY	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	60, 78
BanII	GRGCYC	1 cut(s)	177
BauI	CACGAG	2 cut(s)	46, 324
BccI	CCATC	2 cut(s)	185, 300
BciT130I	CCWGG	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	88
BcuI	ACTAGT	1 cut(s)	412
BfaI	CTAG	3 cut(s)	126, 141, 413
BfmI	CTRYAG	1 cut(s)	354
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
BmcAI	AGTACT	1 cut(s)	383
Bme1390I	CCNGG	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	3 cut(s)	176, 352, 362
BoxI	GACNNNNGTC	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 182
Bse1I	ACTGG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	199
BseGI	GGATG	2 cut(s)	191, 367
BseJI	GATNNNNATC	1 cut(s)	109
BseLI	CCNNNNNNNGG	2 cut(s)	95, 182
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	154
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	31, 99
BsiEI	CGRYCG	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	95, 182
BsmAI	GTCTC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	31, 99
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	104, 110, 449
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	2 cut(s)	31, 99
BspCNI	CTCAG	1 cut(s)	163
BspPI	GGATC	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	154
BssMI	GATC	3 cut(s)	104, 110, 449
BssSI	CACGAG	2 cut(s)	46, 324
Bst2BI	CACGAG	2 cut(s)	46, 324
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	3 cut(s)	210, 355, 421
BstDEI	CTNAG	1 cut(s)	171
BstEII	GGTNACC	2 cut(s)	4, 235
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	191, 367
BstKTI	GATC	3 cut(s)	107, 113, 452
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	104, 110, 449
BstMCI	CGRYCG	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	199
BstPAI	GACNNNNGTC	1 cut(s)	80
BstPI	GGTNACC	2 cut(s)	4, 235
BstSCI	CCNGG	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	31, 99
BtgZI	GCGATG	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	191, 367
BtsIMutI	CAGTG	2 cut(s)	147, 417
CaiI	CAGNNNCTG	1 cut(s)	440
Csp6I	GTAC	2 cut(s)	145, 382
CviJI	RGCY	4 cut(s)	31, 99, 175, 222
CviKI_1	RGCY	4 cut(s)	31, 99, 175, 222
CviQI	GTAC	2 cut(s)	145, 382
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	3 cut(s)	106, 112, 451
DpnII	GATC	3 cut(s)	104, 110, 449
Eco24I	GRGCYC	1 cut(s)	177
Eco91I	GGTNACC	2 cut(s)	4, 235
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoO65I	GGTNACC	2 cut(s)	4, 235
EcoRII	CCWGG	1 cut(s)	197
EcoT22I	ATGCAT	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	177
FaiI	YATR	4 cut(s)	35, 37, 43, 213
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FblI	GTMKAC	1 cut(s)	409
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	2 cut(s)	198, 374
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	100
FspBI	CTAG	3 cut(s)	126, 141, 413
GluI	GCNGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	298
HaeIII	GGCC	2 cut(s)	31, 99
HincII	GTYRAC	1 cut(s)	410
HindII	GTYRAC	1 cut(s)	410
HinfI	GANTC	3 cut(s)	133, 320, 388
HphI	GGTGA	2 cut(s)	60, 78
Hpy166II	GTNNAC	2 cut(s)	147, 410
Hpy188III	TCNNGA	4 cut(s)	108, 126, 315, 453
Hpy8I	GTNNAC	2 cut(s)	147, 410
HpyAV	CCTTC	3 cut(s)	123, 266, 398
HpyCH4III	ACNGT	3 cut(s)	210, 355, 421
HpyCH4V	TGCA	4 cut(s)	189, 335, 365, 375
HpyF3I	CTNAG	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	104, 110, 449
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	6 cut(s)	102, 135, 184, 204, 211, 328
LweI	GCATC	3 cut(s)	176, 352, 362
MaeI	CTAG	3 cut(s)	126, 141, 413
MaeIII	GTNAC	6 cut(s)	4, 214, 235, 298, 340, 415
MalI	GATC	3 cut(s)	106, 112, 451
MboI	GATC	3 cut(s)	104, 110, 449
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	2 cut(s)	160, 257
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	5 cut(s)	88, 114, 250, 318, 352
Mph1103I	ATGCAT	1 cut(s)	377
MseI	TTAA	2 cut(s)	264, 378
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
NdeII	GATC	3 cut(s)	104, 110, 449
NmuCI	GTSAC	2 cut(s)	340, 415
NsiI	ATGCAT	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	320, 388
PfoI	TCCNGGA	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	101
Ple19I	CGATCG	1 cut(s)	107
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PshAI	GACNNNNGTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	197
PspEI	GGTNACC	2 cut(s)	4, 235
PspGI	CCWGG	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	440
PvuI	CGATCG	1 cut(s)	107
RsaI	GTAC	2 cut(s)	146, 383
RsaNI	GTAC	2 cut(s)	145, 382
SalI	GTCGAC	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	264, 378
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	3 cut(s)	104, 110, 449
ScaI	AGTACT	1 cut(s)	383
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	9 cut(s)	62, 80, 91, 125, 146, 242, 282, 409, 432
SfaNI	GCATC	3 cut(s)	176, 352, 362
SfcI	CTRYAG	1 cut(s)	354
SpeI	ACTAGT	1 cut(s)	412
Sse9I	AATT	2 cut(s)	160, 257
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	3 cut(s)	126, 141, 413
StyD4I	CCNGG	1 cut(s)	197
TaaI	ACNGT	3 cut(s)	210, 355, 421
TaqI	TCGA	3 cut(s)	107, 119, 409
TasI	AATT	2 cut(s)	160, 257
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	320, 388
Tru1I	TTAA	2 cut(s)	264, 378
Tru9I	TTAA	2 cut(s)	264, 378
TscAI	CASTG	2 cut(s)	154, 424
TseFI	GTSAC	2 cut(s)	340, 415
Tsp45I	GTSAC	2 cut(s)	340, 415
TspRI	CASTG	2 cut(s)	154, 424
XagI	CCTNNNNNAGG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	257
XbaI	TCTAGA	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	409
XspI	CTAG	3 cut(s)	126, 141, 413
ZrmI	AGTACT	1 cut(s)	383
Zsp2I	ATGCAT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.