Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

53115265 .. 53118208

Gene Structure 2944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00258670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCCATACACGAGAGCAAAAAGGTCTGCTTCACCACAGACCTCTGTCTCACCTGTCAAAGGCCGCCGATCGAGATCATTGTCGAGGTCTAGAAGGAGTCGTTCTAGGAGCCCATCTGTGGATGCAACCAATCCTGGAAACAACTTGTATGTAACAGGCTTATCCACAAGGGTTACCTCTGCTGATGTTGAGAAATTCTTTAACAAAGAAGGCAAGGTGTTGGAGTGCCATCTTGTAACTGACCCTCGCTCCAGAGAATCTCGTGGATTTGCATTTGTCACAATGGAAACTGTAGAGGATGCAGAGCGATGCATTAAGTACTTGAATCGTTCTGTGCTTGAAGGTCGACTAGTCACTGTGGAAAAGGCGAAGAGGAAGCGAGGGAGGACACCTACTCCAGGAAGGTATCAAGGCTTGAGAGATAAGCGAGATGCAGGACGTGATCGTGGAGGTCATGATTATGGTGATCGTGACCGTGACCGTGATCGTGATCGTAGAAGATCTCGTAGCTATTCACCTCGTAGGCGGAAAGACAGAGAGCCTCCTTCCAGGGACAACCGCCGAGGAAGGTCACGTTCTCCACCAGCTAGGGATAGGAGGGTGGATGAGCATTCAGACTCGTATAGGAGGCGCATGGATCACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

215

Amino Acids

25.05

Weight (kDa)

11.35

Isoelectric Point (pI)

91.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	49 - 118	8.7e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	346
AciI	CCGC	3 cut(s)	64, 526, 559
AclWI	GGATC	1 cut(s)	645
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	3 cut(s)	59, 118, 398
AgsI	TTSAA	2 cut(s)	325, 341
AhlI	ACTAGT	1 cut(s)	349
AjiI	CACGTC	1 cut(s)	440
AjnI	CCWGG	3 cut(s)	133, 397, 548
AluBI	AGCT	2 cut(s)	510, 587
AluI	AGCT	2 cut(s)	510, 587
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	645
AoxI	GGCC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	633
AsuHPI	GGTGA	4 cut(s)	24, 42, 476, 507
BanII	GRGCYC	1 cut(s)	113
BauI	CACGAG	2 cut(s)	10, 261
BccI	CCATC	2 cut(s)	121, 237
BciT130I	CCWGG	3 cut(s)	135, 399, 550
BcoDI	GTCTC	1 cut(s)	52
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	4 cut(s)	90, 105, 350, 588
BfmI	CTRYAG	1 cut(s)	291
BglII	AGATCT	1 cut(s)	500
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	3 cut(s)	135, 399, 550
BmgBI	CACGTC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	3 cut(s)	135, 399, 550
BmsI	GCATC	4 cut(s)	112, 289, 299, 421
BoxI	GACNNNNGTC	1 cut(s)	44
BpmI	CTGGAG	2 cut(s)	235, 381
BpuEI	CTTGAG	1 cut(s)	436
BsaBI	GATNNNNATC	2 cut(s)	73, 489
BsaJI	CCNNGG	2 cut(s)	549, 562
BsaXI	ACNNNNNCTCC	4 cut(s)	233, 263, 379, 409
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 118, 398
Bse8I	GATNNNNATC	2 cut(s)	73, 489
BseBI	CCWGG	3 cut(s)	135, 399, 550
BseDI	CCNNGG	2 cut(s)	549, 562
BseGI	GGATG	3 cut(s)	127, 304, 610
BseJI	GATNNNNATC	2 cut(s)	73, 489
BseLI	CCNNNNNNNGG	3 cut(s)	59, 118, 398
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	3 cut(s)	59, 118, 398
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	566
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	8 cut(s)	68, 74, 442, 466, 484, 490, 500, 637
BspACI	CCGC	3 cut(s)	64, 526, 559
BspANI	GGCC	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	645
BssECI	CCNNGG	2 cut(s)	549, 562
BssMI	GATC	8 cut(s)	68, 74, 442, 466, 484, 490, 500, 637
BssSI	CACGAG	2 cut(s)	10, 261
Bst2BI	CACGAG	2 cut(s)	10, 261
Bst2UI	CCWGG	3 cut(s)	135, 399, 550
Bst4CI	ACNGT	4 cut(s)	292, 358, 476, 482
Bst6I	CTCTTC	1 cut(s)	365
BstEII	GGTNACC	1 cut(s)	172
BstENI	CCTNNNNNAGG	2 cut(s)	57, 396
BstF5I	GGATG	3 cut(s)	127, 304, 610
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	8 cut(s)	71, 77, 445, 469, 487, 493, 503, 640
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	8 cut(s)	68, 74, 442, 466, 484, 490, 500, 637
BstMCI	CGRYCG	1 cut(s)	71
BstNI	CCWGG	3 cut(s)	135, 399, 550
BstPAI	GACNNNNGTC	1 cut(s)	44
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	3 cut(s)	133, 397, 548
BstSFI	CTRYAG	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	322
BtrI	CACGTC	1 cut(s)	440
BtsCI	GGATG	3 cut(s)	127, 304, 610
BtsIMutI	CAGTG	1 cut(s)	354
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	1 cut(s)	633
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	2 cut(s)	455, 634
CviJI	RGCY	7 cut(s)	63, 111, 159, 414, 510, 541, 587
CviKI_1	RGCY	7 cut(s)	63, 111, 159, 414, 510, 541, 587
CviQI	GTAC	1 cut(s)	319
DpnI	GATC	8 cut(s)	70, 76, 444, 468, 486, 492, 502, 639
DpnII	GATC	8 cut(s)	68, 74, 442, 466, 484, 490, 500, 637
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
EciI	GGCGGA	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	113
Eco91I	GGTNACC	1 cut(s)	172
EcoNI	CCTNNNNNAGG	2 cut(s)	57, 396
EcoO65I	GGTNACC	1 cut(s)	172
EcoRII	CCWGG	3 cut(s)	133, 397, 548
EcoT22I	ATGCAT	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	113
FaeI	CATG	2 cut(s)	458, 637
FaiI	YATR	6 cut(s)	7, 150, 456, 462, 624, 635
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	2 cut(s)	454, 633
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	3 cut(s)	134, 311, 617
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	4 cut(s)	90, 105, 350, 588
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	1 cut(s)	64
GsuI	CTGGAG	2 cut(s)	235, 381
HaeIII	GGCC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	633
Hin1II	CATG	2 cut(s)	458, 637
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HincII	GTYRAC	1 cut(s)	347
HindII	GTYRAC	1 cut(s)	347
HinfI	GANTC	4 cut(s)	97, 257, 325, 617
HphI	GGTGA	4 cut(s)	24, 42, 476, 507
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	1 cut(s)	616
Hpy188III	TCNNGA	7 cut(s)	72, 90, 252, 455, 470, 488, 645
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	6 cut(s)	87, 203, 335, 396, 555, 561
HpyCH4III	ACNGT	4 cut(s)	292, 358, 476, 482
HpyCH4IV	ACGT	2 cut(s)	439, 574
HpyCH4V	TGCA	5 cut(s)	125, 272, 302, 312, 434
HpySE526I	ACGT	2 cut(s)	439, 574
Hsp92II	CATG	2 cut(s)	458, 637
HspAI	GCGC	1 cut(s)	631
Kzo9I	GATC	8 cut(s)	68, 74, 442, 466, 484, 490, 500, 637
LmnI	GCTCC	2 cut(s)	108, 254
LweI	GCATC	4 cut(s)	112, 289, 299, 421
MaeI	CTAG	4 cut(s)	90, 105, 350, 588
MaeII	ACGT	2 cut(s)	439, 574
MaeIII	GTNAC	8 cut(s)	151, 172, 235, 277, 352, 470, 476, 570
MalI	GATC	8 cut(s)	70, 76, 444, 468, 486, 492, 502, 639
MboI	GATC	8 cut(s)	68, 74, 442, 466, 484, 490, 500, 637
MboII	GAAGA	2 cut(s)	382, 510
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	1 cut(s)	194
MlyI	GAGTC	2 cut(s)	106, 611
MmeI	TCCRAC	1 cut(s)	201
Mph1103I	ATGCAT	1 cut(s)	314
MseI	TTAA	2 cut(s)	201, 315
MslI	CAYNNNNRTG	1 cut(s)	459
MspR9I	CCNGG	3 cut(s)	135, 399, 550
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	3 cut(s)	135, 399, 550
NdeII	GATC	8 cut(s)	68, 74, 442, 466, 484, 490, 500, 637
NlaIII	CATG	2 cut(s)	458, 637
NlaIV	GGNNCC	1 cut(s)	110
NmeAIII	GCCGAG	1 cut(s)	587
NmuCI	GTSAC	5 cut(s)	277, 352, 470, 476, 570
NsiI	ATGCAT	1 cut(s)	314
PagI	TCATGA	1 cut(s)	454
PctI	GAATGC	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	257, 325
PfoI	TCCNGGA	2 cut(s)	133, 397
PkrI	GCNGC	1 cut(s)	65
Ple19I	CGATCG	1 cut(s)	71
PleI	GAGTC	2 cut(s)	105, 611
PpsI	GAGTC	2 cut(s)	105, 611
PshAI	GACNNNNGTC	1 cut(s)	44
Psp6I	CCWGG	3 cut(s)	133, 397, 548
PspEI	GGTNACC	1 cut(s)	172
PspGI	CCWGG	3 cut(s)	133, 397, 548
PspN4I	GGNNCC	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	500
PvuI	CGATCG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	459
SalI	GTCGAC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	201, 315
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	8 cut(s)	68, 74, 442, 466, 484, 490, 500, 637
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	2 cut(s)	106, 611
ScrFI	CCNGG	3 cut(s)	135, 399, 550
SduI	GDGCHC	1 cut(s)	113
SfaNI	GCATC	4 cut(s)	112, 289, 299, 421
SfcI	CTRYAG	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
SpeI	ACTAGT	1 cut(s)	349
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	3 cut(s)	64, 526, 559
SspMI	CTAG	4 cut(s)	90, 105, 350, 588
StyD4I	CCNGG	3 cut(s)	133, 397, 548
TaaI	ACNGT	4 cut(s)	292, 358, 476, 482
TaiI	ACGT	2 cut(s)	442, 577
TaqI	TCGA	3 cut(s)	71, 83, 346
TasI	AATT	1 cut(s)	194
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	257, 325
Tru1I	TTAA	2 cut(s)	201, 315
Tru9I	TTAA	2 cut(s)	201, 315
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	5 cut(s)	277, 352, 470, 476, 570
Tsp45I	GTSAC	5 cut(s)	277, 352, 470, 476, 570
TspRI	CASTG	1 cut(s)	361
XagI	CCTNNNNNAGG	2 cut(s)	57, 396
XapI	RAATTY	1 cut(s)	194
XbaI	TCTAGA	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	346
XspI	CTAG	4 cut(s)	90, 105, 350, 588
ZrmI	AGTACT	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.