Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009183.1

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

24325 .. 28335

Gene Structure 4011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009183.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgcgcgcaccgaggtttgaatacatggcggaggtgcggtggaggaagaagccgcaggagacgagctcgttggcccaaagcttgaagacctgcctgtccgatatcgagttcaagatttgccggtctgcttcaccacagacctctgtctcacctgtcaaaggccgccgatcgagatcattgtcgaggtctagaaggagtcgttctaggagcccatctgtggatgcaaccaatcctggaaacaacttgtatgtaacaggcttatccacaagggttacctctgctgatgttgagaaattctttaacaaagaaggcaaggtgttggagtgccatcttgtaactgaccctcgctccagagaatctcgtggatttgcatttgtcacaatggaaactgtagaggatgcagagcgatgcattaagtacttgaatcgttctgtgcttgaaggtcgactagtcactgtggaaaaggtatcagtttctgtcaaaggatcaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

164

Amino Acids

18.54

Weight (kDa)

10.24

Isoelectric Point (pI)

74.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	94
Acc36I	ACCTGC	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	445
AccII	CGCG	1 cut(s)	6
AciI	CCGC	4 cut(s)	29, 37, 53, 163
AclWI	GGATC	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	293
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	2 cut(s)	158, 217
AgsI	TTSAA	5 cut(s)	20, 85, 112, 424, 440
AhlI	ACTAGT	1 cut(s)	448
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	2 cut(s)	66, 81
AluI	AGCT	2 cut(s)	66, 81
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	2 cut(s)	53, 151
AlwI	GGATC	1 cut(s)	493
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	2 cut(s)	72, 160
ApoI	RAATTY	1 cut(s)	293
AspLEI	GCGC	2 cut(s)	6, 8
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	123, 141
BanII	GRGCYC	2 cut(s)	68, 212
BauI	CACGAG	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	68
BccI	CCATC	2 cut(s)	220, 336
BciT130I	CCWGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	53, 151
BcuI	ACTAGT	1 cut(s)	448
BfaI	CTAG	3 cut(s)	189, 204, 449
BfmI	CTRYAG	1 cut(s)	390
BfuAI	ACCTGC	1 cut(s)	98
BisI	GCNGC	2 cut(s)	53, 163
BlsI	GCNGC	2 cut(s)	54, 164
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	3 cut(s)	211, 388, 398
BoxI	GACNNNNGTC	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	92
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpmI	CTGGAG	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	11
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 332, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 217
Bse118I	RCCGGY	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	2 cut(s)	226, 403
BseJI	GATNNNNATC	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	158, 217
BsePI	GCGCGC	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	6
Bsh1285I	CGRYCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	74, 162
BsiEI	CGRYCG	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	121
BslI	CCNNNNNNNGG	2 cut(s)	158, 217
BsmAI	GTCTC	2 cut(s)	53, 151
BsmBI	CGTCTC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	74, 162
Bsp1286I	GDGCHC	2 cut(s)	68, 212
Bsp143I	GATC	3 cut(s)	167, 173, 485
BspACI	CCGC	4 cut(s)	29, 37, 53, 163
BspANI	GGCC	2 cut(s)	74, 162
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	209
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	11
BssHII	GCGCGC	1 cut(s)	4
BssMI	GATC	3 cut(s)	167, 173, 485
BssSI	CACGAG	1 cut(s)	360
Bst2BI	CACGAG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	391, 457
BstC8I	GCNNGC	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	271
BstENI	CCTNNNNNAGG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	226, 403
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	2 cut(s)	6, 8
BstKTI	GATC	3 cut(s)	170, 176, 488
BstMAI	GTCTC	2 cut(s)	53, 151
BstMBI	GATC	3 cut(s)	167, 173, 485
BstMCI	CGRYCG	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	234
BstPAI	GACNNNNGTC	1 cut(s)	143
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	74, 162
BtgZI	GCGATG	1 cut(s)	421
BtsCI	GGATG	2 cut(s)	226, 403
BtsIMutI	CAGTG	1 cut(s)	453
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	476
CfoI	GCGC	2 cut(s)	6, 8
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	7 cut(s)	52, 66, 74, 81, 162, 210, 258
CviKI_1	RGCY	7 cut(s)	52, 66, 74, 81, 162, 210, 258
CviQI	GTAC	1 cut(s)	418
DpnI	GATC	3 cut(s)	169, 175, 487
DpnII	GATC	3 cut(s)	167, 173, 485
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	44
Ecl136II	GAGCTC	1 cut(s)	66
Eco24I	GRGCYC	2 cut(s)	68, 212
Eco32I	GATATC	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	66
Eco91I	GGTNACC	1 cut(s)	271
EcoICRI	GAGCTC	1 cut(s)	66
EcoNI	CCTNNNNNAGG	1 cut(s)	156
EcoO65I	GGTNACC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	413
EcoT38I	GRGCYC	2 cut(s)	68, 212
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	1 cut(s)	28
FaiI	YATR	2 cut(s)	26, 249
FatI	CATG	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	445
Fnu4HI	GCNGC	2 cut(s)	53, 163
FokI	GGATG	2 cut(s)	233, 410
FriOI	GRGCYC	2 cut(s)	68, 212
Fsp4HI	GCNGC	2 cut(s)	53, 163
FspBI	CTAG	3 cut(s)	189, 204, 449
GlaI	GCGC	2 cut(s)	5, 7
GluI	GCNGC	2 cut(s)	53, 163
GsuI	CTGGAG	1 cut(s)	334
HaeIII	GGCC	2 cut(s)	74, 162
HapII	CCGG	1 cut(s)	121
HhaI	GCGC	2 cut(s)	6, 8
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	2 cut(s)	4, 6
HinP1I	GCGC	2 cut(s)	4, 6
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	3 cut(s)	196, 356, 424
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	2 cut(s)	123, 141
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	5 cut(s)	112, 171, 189, 351, 489
Hpy8I	GTNNAC	1 cut(s)	446
HpyAV	CCTTC	3 cut(s)	186, 302, 434
HpyCH4III	ACNGT	2 cut(s)	391, 457
HpyCH4V	TGCA	4 cut(s)	224, 371, 401, 411
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	2 cut(s)	4, 6
Kzo9I	GATC	3 cut(s)	167, 173, 485
LmnI	GCTCC	2 cut(s)	207, 353
LpnPI	CCDG	9 cut(s)	41, 103, 107, 134, 165, 219, 240, 246, 364
LweI	GCATC	3 cut(s)	211, 388, 398
MaeI	CTAG	3 cut(s)	189, 204, 449
MaeIII	GTNAC	5 cut(s)	250, 271, 334, 376, 451
MalI	GATC	3 cut(s)	169, 175, 487
MboI	GATC	3 cut(s)	167, 173, 485
MboII	GAAGA	2 cut(s)	58, 97
MhlI	GDGCHC	2 cut(s)	68, 212
MluCI	AATT	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	8 cut(s)	6, 25, 36, 151, 177, 286, 354, 388
Mph1103I	ATGCAT	1 cut(s)	413
MseI	TTAA	2 cut(s)	300, 414
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	6
NdeII	GATC	3 cut(s)	167, 173, 485
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	2 cut(s)	376, 451
NsiI	ATGCAT	1 cut(s)	413
PauI	GCGCGC	1 cut(s)	4
PfeI	GAWTC	2 cut(s)	356, 424
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	54, 164
Ple19I	CGATCG	1 cut(s)	170
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PshAI	GACNNNNGTC	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	232
PspEI	GGTNACC	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	476
PteI	GCGCGC	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SacI	GAGCTC	1 cut(s)	68
SalI	GTCGAC	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	300, 414
SatI	GCNGC	2 cut(s)	53, 163
Sau3AI	GATC	3 cut(s)	167, 173, 485
Sau96I	GGNCC	1 cut(s)	73
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	2 cut(s)	68, 212
SfaNI	GCATC	3 cut(s)	211, 388, 398
SfcI	CTRYAG	1 cut(s)	390
SpeI	ACTAGT	1 cut(s)	448
Sse9I	AATT	1 cut(s)	293
SsiI	CCGC	4 cut(s)	29, 37, 53, 163
SspMI	CTAG	3 cut(s)	189, 204, 449
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	2 cut(s)	391, 457
TaqI	TCGA	4 cut(s)	105, 170, 182, 445
TasI	AATT	1 cut(s)	293
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	2 cut(s)	55, 165
TfiI	GAWTC	2 cut(s)	356, 424
Tru1I	TTAA	2 cut(s)	300, 414
Tru9I	TTAA	2 cut(s)	300, 414
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	2 cut(s)	376, 451
Tsp45I	GTSAC	2 cut(s)	376, 451
TspRI	CASTG	1 cut(s)	460
XagI	CCTNNNNNAGG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	293
XbaI	TCTAGA	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	445
XspI	CTAG	3 cut(s)	189, 204, 449
ZrmI	AGTACT	1 cut(s)	419
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.