Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

1694232 .. 1698200

Gene Structure 3969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g02820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCCGTACACGAGAGTGAAAAGGTCTGTTTCACCGCAGACCTCTGTCTCACCTGTCAAAGGGCGTCAATCGAGATCATTGTCCAGGTCTAGAAGAAGTCGTTCTAGGAGCCCATCTGTGGATGCTAGCAATCCTGGAAACAACTTGTATGTAACGGGCTTATCCACAAGGGTTACCTCTGCTGATGTTGAGAAATTTTTTAACAAAGAAGGCAAGGTGTTGGATTGCCATCTTGTAACTGACCCTCGCTCAAGAGAATCTCGTGGATTTGCATTTGTCACAATGGAAACTGTAGAGGATGCTGAGCGATGTATCAAGTACTTGAATCGTTCTGTGCTTGAAGGTCGACTGGTCACTGTGGAAAAGGCGAAGAGGAAGCGAGGGAGGACACCAACTCCAGGAAGATACCAAGGCTTGAGAGATAAACGAGATGCAGGACGTGATCGTGGAGATCGTGATTATGGTGATCGTGGAGATCGTGATTATGGTGATCGCAACCGTGATCGTGATCGTGATCGTAGAAGATCTCGCAGCTATTCTCCTCGTAGGCGGCAAGACAGAGAGCCTCCATCCAGGGAGCGCCGAGGAAGGTCACGTTCTCCACCAGCCAGGGAGCGGAGGATGGATGAGCATTCAGACTCATACAGAAGGCGCAGGGATCACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

223

Amino Acids

26.03

Weight (kDa)

11.27

Isoelectric Point (pI)

89.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	49 - 118	1.2e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	616
AccI	GTMKAC	1 cut(s)	346
AciI	CCGC	3 cut(s)	35, 550, 616
AclWI	GGATC	1 cut(s)	666
AcsI	RAATTY	1 cut(s)	194
AcyI	GRCGYC	1 cut(s)	64
AfaI	GTAC	2 cut(s)	8, 320
AfiI	CCNNNNNNNGG	4 cut(s)	59, 118, 398, 615
AgsI	TTSAA	2 cut(s)	325, 341
AjiI	CACGTC	1 cut(s)	440
AjnI	CCWGG	5 cut(s)	83, 133, 397, 572, 608
AleI	CACNNNNGTG	1 cut(s)	14
AluBI	AGCT	1 cut(s)	534
AluI	AGCT	1 cut(s)	534
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	666
ApeKI	GCWGC	1 cut(s)	531
ApoI	RAATTY	1 cut(s)	194
Asp700I	GAANNNNTTC	1 cut(s)	100
AspLEI	GCGC	2 cut(s)	582, 654
AsuHPI	GGTGA	4 cut(s)	24, 42, 476, 500
AsuNHI	GCTAGC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	113
BauI	CACGAG	2 cut(s)	10, 261
BbvI	GCAGC	1 cut(s)	543
BccI	CCATC	4 cut(s)	121, 237, 577, 616
BciT130I	CCWGG	5 cut(s)	85, 135, 399, 574, 610
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	3 cut(s)	90, 105, 126
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	583
BglII	AGATCT	1 cut(s)	524
BisI	GCNGC	2 cut(s)	532, 551
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	2 cut(s)	533, 552
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	5 cut(s)	85, 135, 399, 574, 610
BmgBI	CACGTC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	5 cut(s)	85, 135, 399, 574, 610
BmsI	GCATC	3 cut(s)	112, 289, 421
BmtI	GCTAGC	1 cut(s)	129
BoxI	GACNNNNGTC	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	381
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	2 cut(s)	235, 436
BsaBI	GATNNNNATC	3 cut(s)	228, 507, 513
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	4 cut(s)	409, 573, 583, 609
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 118, 398, 615
Bse1I	ACTGG	1 cut(s)	354
Bse8I	GATNNNNATC	3 cut(s)	228, 507, 513
BseBI	CCWGG	5 cut(s)	85, 135, 399, 574, 610
BseDI	CCNNGG	4 cut(s)	409, 573, 583, 609
BseGI	GGATG	5 cut(s)	127, 304, 569, 627, 631
BseJI	GATNNNNATC	3 cut(s)	228, 507, 513
BseLI	CCNNNNNNNGG	4 cut(s)	59, 118, 398, 615
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	531
BseXI	GCAGC	1 cut(s)	543
BslI	CCNNNNNNNGG	4 cut(s)	59, 118, 398, 615
BsmAI	GTCTC	1 cut(s)	52
BsmI	GAATGC	1 cut(s)	631
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp1720I	GCTNAGC	1 cut(s)	303
BspACI	CCGC	3 cut(s)	35, 550, 616
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	110
BspOI	GCTAGC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	666
BsrBI	CCGCTC	1 cut(s)	616
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	4 cut(s)	409, 573, 583, 609
BssNI	GRCGYC	1 cut(s)	64
BssSI	CACGAG	2 cut(s)	10, 261
BssT1I	CCWWGG	1 cut(s)	409
Bst2BI	CACGAG	2 cut(s)	10, 261
Bst2UI	CCWGG	5 cut(s)	85, 135, 399, 574, 610
Bst4CI	ACNGT	3 cut(s)	292, 358, 500
Bst6I	CTCTTC	1 cut(s)	365
BstACI	GRCGYC	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	303
BstEII	GGTNACC	1 cut(s)	172
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	5 cut(s)	127, 304, 569, 627, 631
BstH2I	RGCGCY	1 cut(s)	583
BstHHI	GCGC	2 cut(s)	582, 654
BstMAI	GTCTC	1 cut(s)	52
BstNI	CCWGG	5 cut(s)	85, 135, 399, 574, 610
BstPAI	GACNNNNGTC	1 cut(s)	44
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	5 cut(s)	83, 133, 397, 572, 608
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	543
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BtgZI	GCGATG	1 cut(s)	322
BtrI	CACGTC	1 cut(s)	440
BtsCI	GGATG	5 cut(s)	127, 304, 569, 627, 631
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	2 cut(s)	582, 654
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	7, 319
CviJI	RGCY	6 cut(s)	111, 159, 414, 534, 565, 608
CviKI_1	RGCY	6 cut(s)	111, 159, 414, 534, 565, 608
CviQI	GTAC	2 cut(s)	7, 319
DdeI	CTNAG	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	113
Eco91I	GGTNACC	1 cut(s)	172
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoO65I	GGTNACC	1 cut(s)	172
EcoRII	CCWGG	5 cut(s)	83, 133, 397, 572, 608
EcoT14I	CCWWGG	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	409
FaiI	YATR	4 cut(s)	150, 462, 486, 643
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	532, 551
FokI	GGATG	5 cut(s)	134, 311, 556, 634, 638
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	2 cut(s)	532, 551
FspBI	CTAG	3 cut(s)	90, 105, 126
GlaI	GCGC	2 cut(s)	581, 653
GluI	GCNGC	2 cut(s)	532, 551
GsuI	CTGGAG	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	583
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	2 cut(s)	582, 654
Hin1I	GRCGYC	1 cut(s)	64
Hin6I	GCGC	2 cut(s)	580, 652
HinP1I	GCGC	2 cut(s)	580, 652
HincII	GTYRAC	1 cut(s)	347
HindII	GTYRAC	1 cut(s)	347
HinfI	GANTC	3 cut(s)	257, 325, 638
HphI	GGTGA	4 cut(s)	24, 42, 476, 500
Hpy166II	GTNNAC	2 cut(s)	9, 347
Hpy188I	TCNGA	1 cut(s)	637
Hpy188III	TCNNGA	8 cut(s)	72, 90, 252, 455, 479, 506, 512, 666
Hpy8I	GTNNAC	2 cut(s)	9, 347
HpyAV	CCTTC	4 cut(s)	203, 335, 582, 642
HpyCH4III	ACNGT	3 cut(s)	292, 358, 500
HpyCH4IV	ACGT	2 cut(s)	439, 595
HpyCH4V	TGCA	2 cut(s)	272, 434
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	2 cut(s)	439, 595
Hsp92I	GRCGYC	1 cut(s)	64
HspAI	GCGC	2 cut(s)	580, 652
LmnI	GCTCC	3 cut(s)	108, 577, 613
Lsp1109I	GCAGC	1 cut(s)	543
LweI	GCATC	3 cut(s)	112, 289, 421
MaeI	CTAG	3 cut(s)	90, 105, 126
MaeII	ACGT	2 cut(s)	439, 595
MaeIII	GTNAC	6 cut(s)	151, 172, 235, 277, 352, 591
MbiI	CCGCTC	1 cut(s)	616
MboII	GAAGA	4 cut(s)	105, 382, 414, 534
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	632
MmeI	TCCRAC	1 cut(s)	201
MroXI	GAANNNNTTC	1 cut(s)	100
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	14
MspR9I	CCNGG	5 cut(s)	85, 135, 399, 574, 610
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	5 cut(s)	85, 135, 399, 574, 610
NheI	GCTAGC	1 cut(s)	125
NlaIV	GGNNCC	1 cut(s)	110
NmeAIII	GCCGAG	1 cut(s)	608
NmuCI	GTSAC	3 cut(s)	277, 352, 591
OliI	CACNNNNGTG	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	2 cut(s)	451, 475
PctI	GAATGC	1 cut(s)	631
PdmI	GAANNNNTTC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	257, 325
PfoI	TCCNGGA	2 cut(s)	133, 397
PkrI	GCNGC	2 cut(s)	533, 552
PleI	GAGTC	1 cut(s)	632
PpsI	GAGTC	1 cut(s)	632
PshAI	GACNNNNGTC	1 cut(s)	44
Psp6I	CCWGG	5 cut(s)	83, 133, 397, 572, 608
PspEI	GGTNACC	1 cut(s)	172
PspGI	CCWGG	5 cut(s)	83, 133, 397, 572, 608
PspN4I	GGNNCC	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	524
RsaI	GTAC	2 cut(s)	8, 320
RsaNI	GTAC	2 cut(s)	7, 319
RseI	CAYNNNNRTG	1 cut(s)	14
SalI	GTCGAC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	2 cut(s)	532, 551
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	1 cut(s)	632
ScrFI	CCNGG	5 cut(s)	85, 135, 399, 574, 610
SduI	GDGCHC	1 cut(s)	113
SfaNI	GCATC	3 cut(s)	112, 289, 421
SfcI	CTRYAG	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	250, 415
SmoI	CTYRAG	2 cut(s)	250, 415
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	3 cut(s)	35, 550, 616
SspMI	CTAG	3 cut(s)	90, 105, 126
StyD4I	CCNGG	5 cut(s)	83, 133, 397, 572, 608
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	3 cut(s)	292, 358, 500
TaiI	ACGT	2 cut(s)	442, 598
TaqI	TCGA	2 cut(s)	71, 346
TasI	AATT	1 cut(s)	194
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	553
TfiI	GAWTC	2 cut(s)	257, 325
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	3 cut(s)	277, 352, 591
TseI	GCWGC	1 cut(s)	531
Tsp45I	GTSAC	3 cut(s)	277, 352, 591
TspRI	CASTG	1 cut(s)	361
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	1 cut(s)	194
XbaI	TCTAGA	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	100
XspI	CTAG	3 cut(s)	90, 105, 126
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.