Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

6635190 .. 6636268

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAACCTAGGACTCGGATTTCTCGTGGTTTTGCCTTTGTTACAATGGACTCTGTTGAAGATGCTGAACGCTGCATTAAACATCTCAACCAGTCAGTTCTGGAAGGTCGATACATAACTGTTGAGAGGTCTCGGAGGAAGCGACCAAGAACGCCAACACCTGGGCATTATCTTGGGCTGAAAAATACTAGAGACCATGGCTACCGAGGTGACCGTGGTCGAGATCGTGAACGTGAACGTGATCGCGGTCGGTACCGTGGGGGCTCAGGTCGTGATGACTATGGATATCGGAGGTCACCAAGGCGCTCACCCTATAGAGGTGGCCGCGATTATTCTCCTAGGGGCGGCTCACCTTATGGCGGAAGATCAAGAAGAGAGAGGTCTTATTCTCCATATGGCAGCCCGGAGAGGAAGTATGCCCGCGGCTCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

145

Amino Acids

16.92

Weight (kDa)

11.13

Isoelectric Point (pI)

64.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	161
AccII	CGCG	3 cut(s)	246, 327, 423
AciI	CCGC	6 cut(s)	246, 325, 345, 360, 421, 423
AcoI	YGGCCR	1 cut(s)	322
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	4 cut(s)	161, 317, 344, 359
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	160
Alw26I	GTCTC	2 cut(s)	135, 186
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	2 cut(s)	72, 399
Asp718I	GGTACC	1 cut(s)	252
AspA2I	CCTAGG	2 cut(s)	8, 338
AspLEI	GCGC	1 cut(s)	306
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	4 cut(s)	221, 288, 300, 342
AvrII	CCTAGG	2 cut(s)	8, 338
BanI	GGYRCC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	266
BauI	CACGAG	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	59, 411
BciT130I	CCWGG	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	2 cut(s)	135, 186
BfaI	CTAG	3 cut(s)	9, 189, 339
BfmI	CTRYAG	1 cut(s)	313
BfoI	RGCGCY	1 cut(s)	307
BisI	GCNGC	5 cut(s)	73, 325, 346, 400, 424
BlnI	CCTAGG	2 cut(s)	8, 338
BlsI	GCNGC	5 cut(s)	74, 326, 347, 401, 425
Bme1390I	CCNGG	2 cut(s)	162, 404
BmiI	GGNNCC	3 cut(s)	6, 254, 427
BmrFI	CCNGG	2 cut(s)	162, 404
BmsI	GCATC	1 cut(s)	52
BoxI	GACNNNNGTC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	412
Bpu10I	CCTNAGC	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	404
BsaI	GGTCTC	2 cut(s)	135, 186
BsaJI	CCNNGG	9 cut(s)	8, 161, 196, 205, 214, 256, 299, 338, 421
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	4 cut(s)	161, 317, 344, 359
Bse1I	ACTGG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	9 cut(s)	8, 161, 196, 205, 214, 256, 299, 338, 421
BseLI	CCNNNNNNNGG	4 cut(s)	161, 317, 344, 359
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	59, 411
Bsh1236I	CGCG	3 cut(s)	246, 327, 423
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	324
BshNI	GGYRCC	1 cut(s)	252
BsiEI	CGRYCG	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	404
BslI	CCNNNNNNNGG	4 cut(s)	161, 317, 344, 359
BsmAI	GTCTC	2 cut(s)	135, 186
BsnI	GGCC	1 cut(s)	324
Bso31I	GGTCTC	2 cut(s)	135, 186
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	3 cut(s)	223, 241, 365
Bsp19I	CCATGG	1 cut(s)	196
BspACI	CCGC	6 cut(s)	246, 325, 345, 360, 421, 423
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	278
BspFNI	CGCG	3 cut(s)	246, 327, 423
BspLI	GGNNCC	3 cut(s)	6, 254, 427
BspT107I	GGYRCC	1 cut(s)	252
BspTNI	GGTCTC	2 cut(s)	135, 186
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	9 cut(s)	8, 161, 196, 205, 214, 256, 299, 338, 421
BssMI	GATC	3 cut(s)	223, 241, 365
BssSI	CACGAG	1 cut(s)	24
BssT1I	CCWWGG	4 cut(s)	8, 196, 299, 338
Bst2BI	CACGAG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	3 cut(s)	121, 215, 257
Bst6I	CTCTTC	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	265
BstDSI	CCRYGG	4 cut(s)	196, 214, 256, 421
BstEII	GGTNACC	2 cut(s)	209, 294
BstFNI	CGCG	3 cut(s)	246, 327, 423
BstH2I	RGCGCY	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	3 cut(s)	226, 244, 368
BstMAI	GTCTC	2 cut(s)	135, 186
BstMBI	GATC	3 cut(s)	223, 241, 365
BstMCI	CGRYCG	1 cut(s)	250
BstNI	CCWGG	1 cut(s)	162
BstPAI	GACNNNNGTC	1 cut(s)	216
BstPI	GGTNACC	2 cut(s)	209, 294
BstSCI	CCNGG	2 cut(s)	160, 402
BstSFI	CTRYAG	1 cut(s)	313
BstUI	CGCG	3 cut(s)	246, 327, 423
BstV1I	GCAGC	2 cut(s)	59, 411
BsuRI	GGCC	1 cut(s)	324
BtgI	CCRYGG	4 cut(s)	196, 214, 256, 421
Cac8I	GCNNGC	1 cut(s)	421
CfoI	GCGC	1 cut(s)	306
Cfr42I	CCGCGG	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	7 cut(s)	178, 201, 264, 324, 348, 402, 426
CviKI_1	RGCY	7 cut(s)	178, 201, 264, 324, 348, 402, 426
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	265
DpnI	GATC	3 cut(s)	225, 243, 367
DpnII	GATC	3 cut(s)	223, 241, 365
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
EciI	GGCGGA	1 cut(s)	375
Eco130I	CCWWGG	4 cut(s)	8, 196, 299, 338
Eco24I	GRGCYC	1 cut(s)	266
Eco31I	GGTCTC	2 cut(s)	135, 186
Eco32I	GATATC	1 cut(s)	287
Eco91I	GGTNACC	2 cut(s)	209, 294
EcoO65I	GGTNACC	2 cut(s)	209, 294
EcoRII	CCWGG	1 cut(s)	160
EcoRV	GATATC	1 cut(s)	287
EcoT14I	CCWWGG	4 cut(s)	8, 196, 299, 338
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	4 cut(s)	8, 196, 299, 338
FaeI	CATG	1 cut(s)	200
FaiI	YATR	8 cut(s)	116, 198, 282, 315, 357, 394, 396, 417
FatI	CATG	1 cut(s)	196
FauI	CCCGC	1 cut(s)	428
FauNDI	CATATG	1 cut(s)	394
Fnu4HI	GCNGC	5 cut(s)	73, 325, 346, 400, 424
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	5 cut(s)	73, 325, 346, 400, 424
FspBI	CTAG	3 cut(s)	9, 189, 339
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	5 cut(s)	73, 325, 346, 400, 424
GsuI	CTGGAG	1 cut(s)	412
HaeII	RGCGCY	1 cut(s)	307
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	1 cut(s)	404
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	1 cut(s)	200
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	13, 50
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	4 cut(s)	221, 288, 300, 342
Hpy166II	GTNNAC	2 cut(s)	230, 236
Hpy188I	TCNGA	3 cut(s)	18, 135, 291
Hpy188III	TCNNGA	6 cut(s)	101, 221, 227, 272, 369, 429
Hpy8I	GTNNAC	2 cut(s)	230, 236
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	3 cut(s)	121, 215, 257
HpyCH4IV	ACGT	2 cut(s)	232, 238
HpyCH4V	TGCA	1 cut(s)	75
HpyF3I	CTNAG	1 cut(s)	265
HpySE526I	ACGT	2 cut(s)	232, 238
Hsp92II	CATG	1 cut(s)	200
HspAI	GCGC	1 cut(s)	304
KpnI	GGTACC	1 cut(s)	256
KspI	CCGCGG	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	223, 241, 365
LmnI	GCTCC	1 cut(s)	431
LpnPI	CCDG	6 cut(s)	86, 104, 147, 174, 252, 417
Lsp1109I	GCAGC	2 cut(s)	59, 411
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	3 cut(s)	9, 189, 339
MaeII	ACGT	2 cut(s)	232, 238
MaeIII	GTNAC	3 cut(s)	40, 209, 294
MalI	GATC	3 cut(s)	225, 243, 367
MboI	GATC	3 cut(s)	223, 241, 365
MboII	GAAGA	3 cut(s)	71, 375, 384
MhlI	GDGCHC	1 cut(s)	266
MlyI	GAGTC	2 cut(s)	7, 44
MnlI	CCTC	7 cut(s)	120, 129, 200, 285, 311, 372, 402
MseI	TTAA	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	423
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	2 cut(s)	162, 404
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	3 cut(s)	246, 327, 423
NciI	CCSGG	1 cut(s)	404
NcoI	CCATGG	1 cut(s)	196
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	3 cut(s)	223, 241, 365
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	3 cut(s)	6, 254, 427
NmuCI	GTSAC	2 cut(s)	209, 294
PcsI	WCGNNNNNNNCGW	2 cut(s)	22, 139
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	5 cut(s)	74, 326, 347, 401, 425
PleI	GAGTC	2 cut(s)	7, 44
PpsI	GAGTC	2 cut(s)	7, 44
PshAI	GACNNNNGTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	160
PspEI	GGTNACC	2 cut(s)	209, 294
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	6, 254, 427
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SacII	CCGCGG	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	5 cut(s)	73, 325, 346, 400, 424
Sau3AI	GATC	3 cut(s)	223, 241, 365
SchI	GAGTC	2 cut(s)	7, 44
ScrFI	CCNGG	2 cut(s)	162, 404
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	1 cut(s)	52
SfcI	CTRYAG	1 cut(s)	313
Sfr303I	CCGCGG	1 cut(s)	424
SgrBI	CCGCGG	1 cut(s)	424
SsiI	CCGC	6 cut(s)	246, 325, 345, 360, 421, 423
SspMI	CTAG	3 cut(s)	9, 189, 339
StyD4I	CCNGG	2 cut(s)	160, 402
StyI	CCWWGG	4 cut(s)	8, 196, 299, 338
TaaI	ACNGT	3 cut(s)	121, 215, 257
TaiI	ACGT	2 cut(s)	235, 241
TaqI	TCGA	2 cut(s)	109, 220
TauI	GCSGC	3 cut(s)	327, 348, 426
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseFI	GTSAC	2 cut(s)	209, 294
TseI	GCWGC	2 cut(s)	72, 399
Tsp45I	GTSAC	2 cut(s)	209, 294
Van91I	CCANNNNNTGG	1 cut(s)	161
XmaJI	CCTAGG	2 cut(s)	8, 338
XspI	CTAG	3 cut(s)	9, 189, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.