Rroxscaffold_2G00144110

regulation of mRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001558
Physical Location & Seq
Forward (+)
82101472 .. 82105023
3552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144110.1

Sequence Viewer

Length: 717 bp
ATGGCGGATTCTCCTCGCAGAAGGCAATATGAGGGTTTAATTGCGATTGAGATGAGGATAGGTTTTGGATATGGGGGAATGCCGGTAGTGGCTTGTATGTTAATCTGTAATGACGGACATGGTTTTCTTTCTTTGCTCCCACACTTTGTGCCATTGAATCTGGTTGAAAAAGCAGGTATTCTCGATCCCCTTCTCCATGGAGAGCTCAGTCTCGGTCCAGGTCCAGGTCCAGGTCTATGTCCAGGCCTAGGTCAAGATCAAGATCCTGGTCTAGGCCGAGGCACAGGTCTAGAAGTTGTGACAGGTCAAGATCCAGAAGTCGTGGAAGCGGCTGGTTTTTTACTGTGCTCATCACAGGTGTGTCGTTCTCATCAAGTTGTGCTTTTATGTGGCAGGGATGCTGTTGTAAATCCTGGAAATACACTCTATGTGACTGGCCTATCTCAAAGGGTCTCTGAGAAGGACGTTGAAAGGCACTTTTCAAAGGAGGGAAAGGTAGCTTCATGTTTTCTTGTTGTTGAACCTCGTTCGCGAATTTCCCGTGGTTTTGCCTTCGTTACGATGGATTCTAATGAAGATGCAGAACGGTGCATTAAACATCTCAACCAGTCAGTTCTGGAAGGGCGATACATAACTGTGGAAAGGATTGCGTCAGCTATGTTGGCAGCAATCAAAGATGAGGAGTTTATCCCTCTCAACTTTAGTGAAACAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

238

Amino Acids

25.65

Weight (kDa)

5.27

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 142 - 211 5.7e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 164
AccII CGCG 1 cut(s) 532
AciI CCGC 2 cut(s) 5, 329
AclWI GGATC 3 cut(s) 179, 257, 305
AcsI RAATTY 1 cut(s) 534
AdeI CACNNNGTG 1 cut(s) 148
AfiI CCNNNNNNNGG 4 cut(s) 224, 230, 248, 272
AgsI TTSAA 5 cut(s) 157, 167, 470, 483, 521
AjnI CCWGG 6 cut(s) 217, 223, 229, 241, 265, 412
AleI CACNNNNGTG 1 cut(s) 358
AluBI AGCT 4 cut(s) 205, 500, 656, 713
AluI AGCT 4 cut(s) 205, 500, 656, 713
Alw21I GWGCWC 2 cut(s) 207, 350
Alw26I GTCTC 2 cut(s) 215, 457
AlwI GGATC 3 cut(s) 179, 257, 305
AoxI GGCC 3 cut(s) 244, 274, 436
ApeKI GCWGC 1 cut(s) 665
ApoI RAATTY 1 cut(s) 534
AspA2I CCTAGG 1 cut(s) 247
AspS9I GGNCC 3 cut(s) 215, 221, 227
AvaII GGWCC 3 cut(s) 215, 221, 227
AvrII CCTAGG 1 cut(s) 247
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 2 cut(s) 207, 350
BbvI GCAGC 1 cut(s) 677
BccI CCATC 1 cut(s) 556
BciT130I CCWGG 6 cut(s) 219, 225, 231, 243, 267, 414
BcoDI GTCTC 2 cut(s) 215, 457
BfaI CTAG 3 cut(s) 248, 272, 290
BfuAI ACCTGC 1 cut(s) 164
BisI GCNGC 2 cut(s) 330, 666
BlnI CCTAGG 1 cut(s) 247
BlsI GCNGC 2 cut(s) 331, 667
Bme1390I CCNGG 6 cut(s) 219, 225, 231, 243, 267, 414
Bme18I GGWCC 3 cut(s) 215, 221, 227
BmgT120I GGNCC 3 cut(s) 215, 221, 227
BmrFI CCNGG 6 cut(s) 219, 225, 231, 243, 267, 414
BmsI GCATC 2 cut(s) 388, 568
BsaBI GATNNNNATC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 457
BsaJI CCNNGG 4 cut(s) 196, 247, 277, 541
Bsc4I CCNNNNNNNGG 4 cut(s) 224, 230, 248, 272
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 439, 607
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 6 cut(s) 219, 225, 231, 243, 267, 414
BseDI CCNNGG 4 cut(s) 196, 247, 277, 541
BseGI GGATG 1 cut(s) 403
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 4 cut(s) 224, 230, 248, 272
BseMII CTCAG 2 cut(s) 220, 447
BseNI ACTGG 2 cut(s) 439, 607
BseRI GAGGAG 1 cut(s) 695
BseXI GCAGC 1 cut(s) 677
Bsh1236I CGCG 1 cut(s) 532
BshFI GGCC 3 cut(s) 246, 276, 438
BsiHKAI GWGCWC 2 cut(s) 207, 350
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 4 cut(s) 224, 230, 248, 272
BsmAI GTCTC 2 cut(s) 215, 457
BsmI GAATGC 1 cut(s) 84
BsnI GGCC 3 cut(s) 246, 276, 438
Bso31I GGTCTC 1 cut(s) 457
Bsp1286I GDGCHC 2 cut(s) 207, 350
Bsp143I GATC 4 cut(s) 184, 256, 262, 310
Bsp19I CCATGG 1 cut(s) 196
Bsp68I TCGCGA 1 cut(s) 532
BspACI CCGC 2 cut(s) 5, 329
BspANI GGCC 3 cut(s) 246, 276, 438
BspCNI CTCAG 2 cut(s) 219, 448
BspFNI CGCG 1 cut(s) 532
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 3 cut(s) 179, 257, 305
BspTNI GGTCTC 1 cut(s) 457
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 2 cut(s) 439, 607
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 4 cut(s) 196, 247, 277, 541
BssMI GATC 4 cut(s) 184, 256, 262, 310
BssT1I CCWWGG 2 cut(s) 196, 247
Bst2UI CCWGG 6 cut(s) 219, 225, 231, 243, 267, 414
Bst4CI ACNGT 3 cut(s) 345, 588, 637
BstDEI CTNAG 2 cut(s) 206, 456
BstDSI CCRYGG 2 cut(s) 196, 541
BstENI CCTNNNNNAGG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 403
BstFNI CGCG 1 cut(s) 532
BstKTI GATC 4 cut(s) 187, 259, 265, 313
BstMAI GTCTC 2 cut(s) 215, 457
BstMBI GATC 4 cut(s) 184, 256, 262, 310
BstMWI GCNNNNNNNGC 1 cut(s) 662
BstNI CCWGG 6 cut(s) 219, 225, 231, 243, 267, 414
BstSCI CCNGG 6 cut(s) 217, 223, 229, 241, 265, 412
BstUI CGCG 1 cut(s) 532
BstV1I GCAGC 1 cut(s) 677
BstX2I RGATCY 2 cut(s) 262, 310
BstYI RGATCY 2 cut(s) 262, 310
BsuRI GGCC 3 cut(s) 246, 276, 438
BtgI CCRYGG 2 cut(s) 196, 541
BtsCI GGATG 1 cut(s) 403
BtuMI TCGCGA 1 cut(s) 532
BveI ACCTGC 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 3 cut(s) 215, 221, 227
CseI GACGC 1 cut(s) 639
CviAII CATG 3 cut(s) 119, 197, 504
CviJI RGCY 9 cut(s) 92, 205, 246, 276, 332, 438, 500, 656, 713
CviKI_1 RGCY 9 cut(s) 92, 205, 246, 276, 332, 438, 500, 656, 713
DdeI CTNAG 2 cut(s) 206, 456
DpnI GATC 4 cut(s) 186, 258, 264, 312
DpnII GATC 4 cut(s) 184, 256, 262, 310
DraIII CACNNNGTG 1 cut(s) 148
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 196, 247
Eco147I AGGCCT 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 457
Eco47I GGWCC 3 cut(s) 215, 221, 227
Eco53kI GAGCTC 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoRII CCWGG 6 cut(s) 217, 223, 229, 241, 265, 412
EcoT14I CCWWGG 2 cut(s) 196, 247
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 2 cut(s) 196, 247
FaeI CATG 3 cut(s) 122, 200, 507
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FatI CATG 3 cut(s) 118, 196, 503
Fnu4HI GCNGC 2 cut(s) 330, 666
FokI GGATG 1 cut(s) 410
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 2 cut(s) 330, 666
FspBI CTAG 3 cut(s) 248, 272, 290
GluI GCNGC 2 cut(s) 330, 666
HaeIII GGCC 3 cut(s) 246, 276, 438
HapII CCGG 1 cut(s) 83
HgaI GACGC 1 cut(s) 639
Hin1II CATG 3 cut(s) 122, 200, 507
HinfI GANTC 3 cut(s) 8, 157, 566
HpaII CCGG 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 457
Hpy188III TCNNGA 8 cut(s) 182, 254, 260, 290, 308, 314, 531, 617
HpyAV CCTTC 5 cut(s) 15, 200, 454, 562, 614
HpyCH4III ACNGT 3 cut(s) 345, 588, 637
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 2 cut(s) 581, 591
HpyF10VI GCNNNNNNNGC 1 cut(s) 662
HpyF3I CTNAG 2 cut(s) 206, 456
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 3 cut(s) 122, 200, 507
Kzo9I GATC 4 cut(s) 184, 256, 262, 310
LmnI GCTCC 1 cut(s) 141
Lsp1109I GCAGC 1 cut(s) 677
LweI GCATC 2 cut(s) 388, 568
MaeI CTAG 3 cut(s) 248, 272, 290
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 3 cut(s) 298, 430, 556
MalI GATC 4 cut(s) 186, 258, 264, 312
MboI GATC 4 cut(s) 184, 256, 262, 310
MboII GAAGA 1 cut(s) 587
MflI RGATCY 2 cut(s) 262, 310
MhlI GDGCHC 2 cut(s) 207, 350
MluCI AATT 2 cut(s) 39, 534
MnlI CCTC 8 cut(s) 24, 25, 48, 272, 481, 534, 673, 702
MseI TTAA 3 cut(s) 38, 101, 594
MslI CAYNNNNRTG 2 cut(s) 358, 635
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 6 cut(s) 219, 225, 231, 243, 267, 414
Mva1269I GAATGC 1 cut(s) 84
MvaI CCWGG 6 cut(s) 219, 225, 231, 243, 267, 414
MvnI CGCG 1 cut(s) 532
MwoI GCNNNNNNNGC 1 cut(s) 662
NcoI CCATGG 1 cut(s) 196
NdeII GATC 4 cut(s) 184, 256, 262, 310
NlaIII CATG 3 cut(s) 122, 200, 507
NmeAIII GCCGAG 1 cut(s) 302
NmuCI GTSAC 2 cut(s) 298, 430
NruI TCGCGA 1 cut(s) 532
OliI CACNNNNGTG 1 cut(s) 358
PceI AGGCCT 1 cut(s) 246
PctI GAATGC 1 cut(s) 84
PfeI GAWTC 3 cut(s) 8, 157, 566
PfoI TCCNGGA 1 cut(s) 412
PkrI GCNGC 2 cut(s) 331, 667
Psp124BI GAGCTC 1 cut(s) 207
Psp6I CCWGG 6 cut(s) 217, 223, 229, 241, 265, 412
PspGI CCWGG 6 cut(s) 217, 223, 229, 241, 265, 412
PspPI GGNCC 3 cut(s) 215, 221, 227
PsuI RGATCY 2 cut(s) 262, 310
RruI TCGCGA 1 cut(s) 532
RseI CAYNNNNRTG 2 cut(s) 358, 635
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 3 cut(s) 38, 101, 594
SatI GCNGC 2 cut(s) 330, 666
Sau3AI GATC 4 cut(s) 184, 256, 262, 310
Sau96I GGNCC 3 cut(s) 215, 221, 227
ScrFI CCNGG 6 cut(s) 219, 225, 231, 243, 267, 414
SduI GDGCHC 2 cut(s) 207, 350
SfaNI GCATC 2 cut(s) 388, 568
SinI GGWCC 3 cut(s) 215, 221, 227
SmiMI CAYNNNNRTG 2 cut(s) 358, 635
Sse9I AATT 2 cut(s) 39, 534
SseBI AGGCCT 1 cut(s) 246
SsiI CCGC 2 cut(s) 5, 329
SspMI CTAG 3 cut(s) 248, 272, 290
SstI GAGCTC 1 cut(s) 207
StuI AGGCCT 1 cut(s) 246
StyD4I CCNGG 6 cut(s) 217, 223, 229, 241, 265, 412
StyI CCWWGG 2 cut(s) 196, 247
TaaI ACNGT 3 cut(s) 345, 588, 637
TaiI ACGT 1 cut(s) 468
TaqI TCGA 1 cut(s) 183
TaqII GACCGA 1 cut(s) 203
TasI AATT 2 cut(s) 39, 534
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 3 cut(s) 8, 157, 566
Tru1I TTAA 3 cut(s) 38, 101, 594
Tru9I TTAA 3 cut(s) 38, 101, 594
TseFI GTSAC 2 cut(s) 298, 430
TseI GCWGC 1 cut(s) 665
Tsp45I GTSAC 2 cut(s) 298, 430
TspDTI ATGAA 2 cut(s) 492, 588
TspGWI ACGGA 1 cut(s) 129
VpaK11BI GGWCC 3 cut(s) 215, 221, 227
XagI CCTNNNNNAGG 1 cut(s) 270
XapI RAATTY 1 cut(s) 534
XbaI TCTAGA 1 cut(s) 289
XmaJI CCTAGG 1 cut(s) 247
XspI CTAG 3 cut(s) 248, 272, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.