Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

13492665 .. 13495419

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g08380.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCCATACCCAAGAGAAAGAAGGTCCGCTTCGCCACACAACTCTCCTTCACCCGTCAGAGGCCGCCGGTCGAGATCATTGTCGAGGTCTAGGAGAAGTCGTTCTAGGAGCCATGAATCTGTCGATGCATCCAATCCTGGAAACAACTTGTACGTAACAGGCTTATCCACAAGGGTTACCTCCACTGATCTTGAGAAATTTTTTAATAAACAGGGGAAGGTACGAGTACTTGACTGCCATCTGGTTACAGACCCTCGCACCAGAGAATCCCGTGGATTTGGCTTTGTCACAATGGAAACTGTTGAGGATGCAGAACGCTGCATCAAATATTTGGATCGGTCTGTGCTTGAAGGTCGATTAATTACAGTGGAAAAGGCAAAAAGGAAACGAGGGAGGACTCCAACTCCCGGAAGGTATCAAGGTTTGAGAGATAAACGAGGACGTGACCGTGACCGTGATCGTGATCGTGATCATGACCATAGACGATCTCGAAGCTATTCACCTCGCAGGTTGCAAGACAGAGATCCTTATCCCAGGGACCGCCGAGGAAGATCACGCTCTCCATATGGTAGGAGGGCGGATGAACACTCGCACTCGTACAGGAGGCGCAGGGAACGCTCCTTGTCAGGGGGCAGAAACCCTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

216

Amino Acids

25.4

Weight (kDa)

11.51

Isoelectric Point (pI)

88.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	498
AciI	CCGC	4 cut(s)	27, 64, 541, 578
AclWI	GGATC	2 cut(s)	342, 518
AcsI	RAATTY	1 cut(s)	197
AfaI	GTAC	4 cut(s)	152, 222, 228, 599
AfiI	CCNNNNNNNGG	3 cut(s)	59, 407, 627
AgsI	TTSAA	1 cut(s)	350
AjiI	CACGTC	1 cut(s)	443
AjnI	CCWGG	2 cut(s)	136, 533
AloI	GAACNNNNNNTCC	2 cut(s)	85, 117
AluBI	AGCT	1 cut(s)	495
AluI	AGCT	1 cut(s)	495
AlwI	GGATC	2 cut(s)	342, 518
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	318
ApoI	RAATTY	1 cut(s)	197
AseI	ATTAAT	1 cut(s)	359
Asp700I	GAANNNNTTC	2 cut(s)	100, 496
AspLEI	GCGC	1 cut(s)	609
AspS9I	GGNCC	2 cut(s)	24, 538
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	2 cut(s)	42, 492
AvaII	GGWCC	2 cut(s)	24, 538
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	246
BciT130I	CCWGG	2 cut(s)	138, 535
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	408
BfaI	CTAG	3 cut(s)	90, 105, 642
BfuAI	ACCTGC	1 cut(s)	498
BisI	GCNGC	2 cut(s)	64, 319
BlsI	GCNGC	2 cut(s)	65, 320
BmcAI	AGTACT	1 cut(s)	228
Bme1390I	CCNGG	3 cut(s)	138, 408, 535
Bme18I	GGWCC	2 cut(s)	24, 538
BmgBI	CACGTC	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	24, 538
BmiI	GGNNCC	2 cut(s)	110, 539
BmrFI	CCNGG	3 cut(s)	138, 408, 535
BmsI	GCATC	4 cut(s)	115, 137, 298, 330
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	408
BsaAI	YACGTR	1 cut(s)	154
BsaBI	GATNNNNATC	3 cut(s)	462, 468, 528
BsaJI	CCNNGG	4 cut(s)	271, 533, 534, 544
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 115, 388, 418
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 407, 627
Bse118I	RCCGGY	1 cut(s)	66
Bse8I	GATNNNNATC	3 cut(s)	462, 468, 528
BseBI	CCWGG	2 cut(s)	138, 535
BseDI	CCNNGG	4 cut(s)	271, 533, 534, 544
BseGI	GGATG	3 cut(s)	128, 313, 586
BseJI	GATNNNNATC	3 cut(s)	462, 468, 528
BseLI	CCNNNNNNNGG	3 cut(s)	59, 407, 627
BseXI	GCAGC	1 cut(s)	305
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	67, 408
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	3 cut(s)	59, 407, 627
BsmFI	GGGAC	1 cut(s)	551
BsnI	GGCC	1 cut(s)	63
Bsp143I	GATC	9 cut(s)	74, 187, 334, 457, 463, 469, 485, 523, 551
BspACI	CCGC	4 cut(s)	27, 64, 541, 578
BspANI	GGCC	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	110, 539
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	2 cut(s)	342, 518
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	4 cut(s)	271, 533, 534, 544
BssMI	GATC	9 cut(s)	74, 187, 334, 457, 463, 469, 485, 523, 551
Bst2UI	CCWGG	2 cut(s)	138, 535
Bst4CI	ACNGT	4 cut(s)	301, 367, 449, 455
BstBAI	YACGTR	1 cut(s)	154
BstDSI	CCRYGG	1 cut(s)	271
BstEII	GGTNACC	1 cut(s)	175
BstF5I	GGATG	3 cut(s)	128, 313, 586
BstHHI	GCGC	1 cut(s)	609
BstKTI	GATC	9 cut(s)	77, 190, 337, 460, 466, 472, 488, 526, 554
BstMBI	GATC	9 cut(s)	74, 187, 334, 457, 463, 469, 485, 523, 551
BstMCI	CGRYCG	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	615
BstNI	CCWGG	2 cut(s)	138, 535
BstPI	GGTNACC	1 cut(s)	175
BstSCI	CCNGG	3 cut(s)	136, 406, 533
BstSNI	TACGTA	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BsuRI	GGCC	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	271
BtrI	CACGTC	1 cut(s)	443
BtsCI	GGATG	3 cut(s)	128, 313, 586
BtsIMutI	CAGTG	2 cut(s)	183, 372
BveI	ACCTGC	1 cut(s)	498
CciI	TCATGA	1 cut(s)	472
CfoI	GCGC	1 cut(s)	609
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	24, 538
Csp6I	GTAC	4 cut(s)	151, 221, 227, 598
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	2 cut(s)	113, 473
CviJI	RGCY	5 cut(s)	63, 111, 162, 282, 495
CviKI_1	RGCY	5 cut(s)	63, 111, 162, 282, 495
CviQI	GTAC	4 cut(s)	151, 221, 227, 598
DpnI	GATC	9 cut(s)	76, 189, 336, 459, 465, 471, 487, 525, 553
DpnII	GATC	9 cut(s)	74, 187, 334, 457, 463, 469, 485, 523, 551
EciI	GGCGGA	1 cut(s)	593
Eco105I	TACGTA	1 cut(s)	154
Eco47I	GGWCC	2 cut(s)	24, 538
Eco91I	GGTNACC	1 cut(s)	175
EcoO65I	GGTNACC	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	136, 533
EcoT22I	ATGCAT	1 cut(s)	130
FaeI	CATG	2 cut(s)	116, 476
FaiI	YATR	6 cut(s)	7, 114, 474, 480, 565, 567
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	2 cut(s)	112, 472
FauNDI	CATATG	1 cut(s)	565
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	2 cut(s)	64, 319
FokI	GGATG	3 cut(s)	115, 320, 593
Fsp4HI	GCNGC	2 cut(s)	64, 319
FspBI	CTAG	3 cut(s)	90, 105, 642
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	2 cut(s)	64, 319
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	2 cut(s)	67, 408
HhaI	GCGC	1 cut(s)	609
Hin1II	CATG	2 cut(s)	116, 476
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HinfI	GANTC	3 cut(s)	116, 266, 397
HpaII	CCGG	2 cut(s)	67, 408
HphI	GGTGA	2 cut(s)	42, 492
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	6 cut(s)	72, 191, 461, 467, 473, 489
HpyAV	CCTTC	5 cut(s)	15, 57, 211, 344, 405
HpyCH4III	ACNGT	4 cut(s)	301, 367, 449, 455
HpyCH4IV	ACGT	2 cut(s)	153, 442
HpyCH4V	TGCA	4 cut(s)	128, 311, 321, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	615
HpySE526I	ACGT	2 cut(s)	153, 442
Hsp92II	CATG	2 cut(s)	116, 476
HspAI	GCGC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	9 cut(s)	74, 187, 334, 457, 463, 469, 485, 523, 551
LmnI	GCTCC	2 cut(s)	108, 623
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	4 cut(s)	115, 137, 298, 330
MaeI	CTAG	3 cut(s)	90, 105, 642
MaeII	ACGT	2 cut(s)	153, 442
MaeIII	GTNAC	6 cut(s)	154, 175, 244, 286, 443, 449
MalI	GATC	9 cut(s)	76, 189, 336, 459, 465, 471, 487, 525, 553
MboI	GATC	9 cut(s)	74, 187, 334, 457, 463, 469, 485, 523, 551
MboII	GAAGA	1 cut(s)	561
MflI	RGATCY	1 cut(s)	523
MluCI	AATT	2 cut(s)	197, 360
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	1 cut(s)	425
Mph1103I	ATGCAT	1 cut(s)	130
MroXI	GAANNNNTTC	2 cut(s)	100, 496
MseI	TTAA	2 cut(s)	204, 359
MspI	CCGG	2 cut(s)	67, 408
MspR9I	CCNGG	3 cut(s)	138, 408, 535
MvaI	CCWGG	2 cut(s)	138, 535
MwoI	GCNNNNNNNGC	1 cut(s)	615
NciI	CCSGG	1 cut(s)	408
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	9 cut(s)	74, 187, 334, 457, 463, 469, 485, 523, 551
NlaIII	CATG	2 cut(s)	116, 476
NlaIV	GGNNCC	2 cut(s)	110, 539
NmeAIII	GCCGAG	1 cut(s)	569
NmuCI	GTSAC	3 cut(s)	286, 443, 449
NsiI	ATGCAT	1 cut(s)	130
PagI	TCATGA	1 cut(s)	472
PasI	CCCWGGG	1 cut(s)	534
PdmI	GAANNNNTTC	2 cut(s)	100, 496
PfeI	GAWTC	2 cut(s)	116, 266
PfoI	TCCNGGA	2 cut(s)	136, 406
PkrI	GCNGC	2 cut(s)	65, 320
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
Ppu21I	YACGTR	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	136, 533
PspEI	GGTNACC	1 cut(s)	175
PspGI	CCWGG	2 cut(s)	136, 533
PspN4I	GGNNCC	2 cut(s)	110, 539
PspPI	GGNCC	2 cut(s)	24, 538
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	4 cut(s)	152, 222, 228, 599
RsaNI	GTAC	4 cut(s)	151, 221, 227, 598
SaqAI	TTAA	2 cut(s)	204, 359
SatI	GCNGC	2 cut(s)	64, 319
Sau3AI	GATC	9 cut(s)	74, 187, 334, 457, 463, 469, 485, 523, 551
Sau96I	GGNCC	2 cut(s)	24, 538
ScaI	AGTACT	1 cut(s)	228
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	3 cut(s)	138, 408, 535
SfaNI	GCATC	4 cut(s)	115, 137, 298, 330
SinI	GGWCC	2 cut(s)	24, 538
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SnaBI	TACGTA	1 cut(s)	154
Sse9I	AATT	2 cut(s)	197, 360
SsiI	CCGC	4 cut(s)	27, 64, 541, 578
SspI	AATATT	1 cut(s)	329
SspMI	CTAG	3 cut(s)	90, 105, 642
StyD4I	CCNGG	3 cut(s)	136, 406, 533
TaaI	ACNGT	4 cut(s)	301, 367, 449, 455
TaiI	ACGT	2 cut(s)	156, 445
TaqI	TCGA	5 cut(s)	71, 83, 123, 355, 490
TaqII	GACCGA	1 cut(s)	327
TasI	AATT	2 cut(s)	197, 360
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	116, 266
Tru1I	TTAA	2 cut(s)	204, 359
Tru9I	TTAA	2 cut(s)	204, 359
TscAI	CASTG	2 cut(s)	190, 372
TseFI	GTSAC	3 cut(s)	286, 443, 449
TseI	GCWGC	1 cut(s)	318
Tsp45I	GTSAC	3 cut(s)	286, 443, 449
TspDTI	ATGAA	2 cut(s)	129, 597
TspRI	CASTG	2 cut(s)	190, 372
VpaK11BI	GGWCC	2 cut(s)	24, 538
VspI	ATTAAT	1 cut(s)	359
XapI	RAATTY	1 cut(s)	197
XmnI	GAANNNNTTC	2 cut(s)	100, 496
XspI	CTAG	3 cut(s)	90, 105, 642
ZrmI	AGTACT	1 cut(s)	228
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.