RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 423 |
| AccII | CGCG | 2 cut(s) | 209, 1696 |
| AccIII | TCCGGA | 1 cut(s) | 665 |
| AciI | CCGC | 6 cut(s) | 177, 232, 1279, 1395, 1671, 1967 |
| AclWI | GGATC | 2 cut(s) | 314, 1099 |
| AcoI | YGGCCR | 2 cut(s) | 1585, 1941 |
| AcsI | RAATTY | 6 cut(s) | 430, 451, 600, 850, 1153, 1218 |
| AcuI | CTGAAG | 1 cut(s) | 1884 |
| AfaI | GTAC | 6 cut(s) | 390, 776, 1359, 1385, 1622, 1643 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 262, 291, 378 |
| AjnI | CCWGG | 1 cut(s) | 1946 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 48, 80, 554, 586 |
| Alw21I | GWGCWC | 2 cut(s) | 1209, 1668 |
| Alw26I | GTCTC | 4 cut(s) | 274, 1302, 1456, 1980 |
| AlwI | GGATC | 2 cut(s) | 314, 1099 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 295, 1031 |
| Ama87I | CYCGRG | 2 cut(s) | 261, 372 |
| Aor13HI | TCCGGA | 1 cut(s) | 665 |
| AoxI | GGCC | 6 cut(s) | 94, 218, 307, 1238, 1585, 1941 |
| ApeKI | GCWGC | 3 cut(s) | 803, 971, 974 |
| ApoI | RAATTY | 6 cut(s) | 430, 451, 600, 850, 1153, 1218 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1434, 1466 |
| AseI | ATTAAT | 2 cut(s) | 362, 1265 |
| AspLEI | GCGC | 2 cut(s) | 211, 1696 |
| AspS9I | GGNCC | 3 cut(s) | 219, 229, 308 |
| AsuC2I | CCSGG | 1 cut(s) | 1657 |
| AsuHPI | GGTGA | 8 cut(s) | 76, 133, 158, 178, 754, 893, 1502, 1811 |
| AvaI | CYCGRG | 2 cut(s) | 261, 372 |
| AvaII | GGWCC | 1 cut(s) | 229 |
| BalI | TGGCCA | 2 cut(s) | 1587, 1943 |
| BanII | GRGCYC | 1 cut(s) | 1209 |
| Bbv12I | GWGCWC | 2 cut(s) | 1209, 1668 |
| BbvI | GCAGC | 3 cut(s) | 815, 958, 961 |
| BccI | CCATC | 4 cut(s) | 230, 677, 1490, 1933 |
| BciT130I | CCWGG | 1 cut(s) | 1948 |
| BcnI | CCSGG | 1 cut(s) | 1657 |
| BcoDI | GTCTC | 4 cut(s) | 274, 1302, 1456, 1980 |
| BfaI | CTAG | 6 cut(s) | 1271, 1409, 1437, 1709, 1809, 1892 |
| BfmI | CTRYAG | 2 cut(s) | 1361, 1743 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 217, 1593 |
| BglII | AGATCT | 2 cut(s) | 988, 1840 |
| BisI | GCNGC | 4 cut(s) | 804, 972, 975, 1279 |
| BlsI | GCNGC | 4 cut(s) | 805, 973, 976, 1280 |
| Bme1390I | CCNGG | 2 cut(s) | 1657, 1948 |
| Bme18I | GGWCC | 1 cut(s) | 229 |
| BmeT110I | CYCGRG | 2 cut(s) | 261, 372 |
| BmgT120I | GGNCC | 3 cut(s) | 219, 229, 308 |
| BmrFI | CCNGG | 2 cut(s) | 1657, 1948 |
| BmsI | GCATC | 6 cut(s) | 238, 813, 1422, 1664, 1686, 1888 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1535, 1567 |
| BpmI | CTGGAG | 1 cut(s) | 1053 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1235 |
| BpuMI | CCSGG | 1 cut(s) | 1657 |
| BsaJI | CCNNGG | 1 cut(s) | 1655 |
| BsaWI | WCCGGW | 1 cut(s) | 665 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 32, 62 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 262, 291, 378 |
| Bse118I | RCCGGY | 1 cut(s) | 234 |
| Bse1I | ACTGG | 2 cut(s) | 684, 1036 |
| BseAI | TCCGGA | 1 cut(s) | 665 |
| BseBI | CCWGG | 1 cut(s) | 1948 |
| BseDI | CCNNGG | 1 cut(s) | 1655 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 262, 291, 378 |
| BseMII | CTCAG | 3 cut(s) | 527, 1299, 1524 |
| BseNI | ACTGG | 2 cut(s) | 684, 1036 |
| BseRI | GAGGAG | 1 cut(s) | 1727 |
| BseXI | GCAGC | 3 cut(s) | 815, 958, 961 |
| BseYI | CCCAGC | 2 cut(s) | 78, 872 |
| BsgI | GTGCAG | 1 cut(s) | 1654 |
| Bsh1236I | CGCG | 2 cut(s) | 209, 1696 |
| BshFI | GGCC | 6 cut(s) | 96, 220, 309, 1240, 1587, 1943 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1209, 1668 |
| BsiHKCI | CYCGRG | 2 cut(s) | 261, 372 |
| BsiSI | CCGG | 3 cut(s) | 235, 666, 1657 |
| BslFI | GGGAC | 2 cut(s) | 1072, 1304 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 262, 291, 378 |
| BsmAI | GTCTC | 4 cut(s) | 274, 1302, 1456, 1980 |
| BsmBI | CGTCTC | 1 cut(s) | 274 |
| BsmFI | GGGAC | 2 cut(s) | 1072, 1304 |
| BsmI | GAATGC | 2 cut(s) | 1311, 1372 |
| BsnI | GGCC | 6 cut(s) | 96, 220, 309, 1240, 1587, 1943 |
| BsoBI | CYCGRG | 2 cut(s) | 261, 372 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1209, 1668 |
| Bsp13I | TCCGGA | 1 cut(s) | 665 |
| Bsp1407I | TGTACA | 1 cut(s) | 388 |
| Bsp143I | GATC | 6 cut(s) | 319, 988, 1041, 1091, 1840, 1867 |
| BspACI | CCGC | 6 cut(s) | 177, 232, 1279, 1395, 1671, 1967 |
| BspANI | GGCC | 6 cut(s) | 96, 220, 309, 1240, 1587, 1943 |
| BspCNI | CTCAG | 3 cut(s) | 526, 1298, 1525 |
| BspEI | TCCGGA | 1 cut(s) | 665 |
| BspFNI | CGCG | 2 cut(s) | 209, 1696 |
| BspMAI | CTGCAG | 1 cut(s) | 1365 |
| BspPI | GGATC | 2 cut(s) | 314, 1099 |
| BspQI | GCTCTTC | 1 cut(s) | 1214 |
| BsrFI | RCCGGY | 1 cut(s) | 234 |
| BsrGI | TGTACA | 1 cut(s) | 388 |
| BsrI | ACTGG | 2 cut(s) | 684, 1036 |
| BssAI | RCCGGY | 1 cut(s) | 234 |
| BssECI | CCNNGG | 1 cut(s) | 1655 |
| BssMI | GATC | 6 cut(s) | 319, 988, 1041, 1091, 1840, 1867 |
| Bst2UI | CCWGG | 1 cut(s) | 1948 |
| Bst4CI | ACNGT | 6 cut(s) | 443, 523, 532, 649, 719, 1048 |
| Bst6I | CTCTTC | 4 cut(s) | 50, 168, 1214, 1727 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 869 |
| BstAUI | TGTACA | 1 cut(s) | 388 |
| BstC8I | GCNNGC | 5 cut(s) | 236, 1276, 1594, 1692, 1698 |
| BstDEI | CTNAG | 4 cut(s) | 513, 1235, 1285, 1533 |
| BstFNI | CGCG | 2 cut(s) | 209, 1696 |
| BstHHI | GCGC | 2 cut(s) | 211, 1696 |
| BstKTI | GATC | 6 cut(s) | 322, 991, 1044, 1094, 1843, 1870 |
| BstMAI | GTCTC | 4 cut(s) | 274, 1302, 1456, 1980 |
| BstMBI | GATC | 6 cut(s) | 319, 988, 1041, 1091, 1840, 1867 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 217, 869, 1034, 1511, 1593 |
| BstNI | CCWGG | 1 cut(s) | 1948 |
| BstNSI | RCATGY | 1 cut(s) | 1584 |
| BstSCI | CCNGG | 2 cut(s) | 1655, 1946 |
| BstSFI | CTRYAG | 2 cut(s) | 1361, 1743 |
| BstUI | CGCG | 2 cut(s) | 209, 1696 |
| BstV1I | GCAGC | 3 cut(s) | 815, 958, 961 |
| BstX2I | RGATCY | 2 cut(s) | 988, 1840 |
| BstYI | RGATCY | 2 cut(s) | 988, 1840 |
| BsuRI | GGCC | 6 cut(s) | 96, 220, 309, 1240, 1587, 1943 |
| BtsI | GCAGTG | 3 cut(s) | 768, 1666, 1850 |
| BtsIMutI | CAGTG | 5 cut(s) | 768, 1044, 1064, 1666, 1850 |
| Cac8I | GCNNGC | 5 cut(s) | 236, 1276, 1594, 1692, 1698 |
| CaiI | CAGNNNCTG | 2 cut(s) | 295, 1031 |
| CfoI | GCGC | 2 cut(s) | 211, 1696 |
| Cfr10I | RCCGGY | 1 cut(s) | 234 |
| Cfr13I | GGNCC | 3 cut(s) | 219, 229, 308 |
| Csp6I | GTAC | 6 cut(s) | 389, 775, 1358, 1384, 1621, 1642 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1452, 1487 |
| CviQI | GTAC | 6 cut(s) | 389, 775, 1358, 1384, 1621, 1642 |
| DdeI | CTNAG | 4 cut(s) | 513, 1235, 1285, 1533 |
| DpnI | GATC | 6 cut(s) | 321, 990, 1043, 1093, 1842, 1869 |
| DpnII | GATC | 6 cut(s) | 319, 988, 1041, 1091, 1840, 1867 |
| EaeI | YGGCCR | 2 cut(s) | 1585, 1941 |
| Eam1104I | CTCTTC | 4 cut(s) | 50, 168, 1214, 1727 |
| EarI | CTCTTC | 4 cut(s) | 50, 168, 1214, 1727 |
| EciI | GGCGGA | 1 cut(s) | 221 |
| Ecl136II | GAGCTC | 1 cut(s) | 1207 |
| Eco147I | AGGCCT | 1 cut(s) | 96 |
| Eco24I | GRGCYC | 1 cut(s) | 1209 |
| Eco47I | GGWCC | 1 cut(s) | 229 |
| Eco53kI | GAGCTC | 1 cut(s) | 1207 |
| Eco57I | CTGAAG | 1 cut(s) | 1884 |
| Eco88I | CYCGRG | 2 cut(s) | 261, 372 |
| EcoICRI | GAGCTC | 1 cut(s) | 1207 |
| EcoRI | GAATTC | 2 cut(s) | 850, 1153 |
| EcoRII | CCWGG | 1 cut(s) | 1946 |
| EcoT22I | ATGCAT | 1 cut(s) | 1679 |
| EcoT38I | GRGCYC | 1 cut(s) | 1209 |
| Esp3I | CGTCTC | 1 cut(s) | 274 |
| FaqI | GGGAC | 2 cut(s) | 1072, 1304 |
| FauI | CCCGC | 2 cut(s) | 1388, 1960 |
| Fnu4HI | GCNGC | 4 cut(s) | 804, 972, 975, 1279 |
| FriOI | GRGCYC | 1 cut(s) | 1209 |
| Fsp4HI | GCNGC | 4 cut(s) | 804, 972, 975, 1279 |
| FspBI | CTAG | 6 cut(s) | 1271, 1409, 1437, 1709, 1809, 1892 |
| GlaI | GCGC | 2 cut(s) | 210, 1695 |
| GluI | GCNGC | 4 cut(s) | 804, 972, 975, 1279 |
| GsaI | CCCAGC | 2 cut(s) | 82, 876 |
| GsuI | CTGGAG | 1 cut(s) | 1053 |
| HaeIII | GGCC | 6 cut(s) | 96, 220, 309, 1240, 1587, 1943 |
| HapII | CCGG | 3 cut(s) | 235, 666, 1657 |
| HhaI | GCGC | 2 cut(s) | 211, 1696 |
| Hin6I | GCGC | 2 cut(s) | 209, 1694 |
| HinP1I | GCGC | 2 cut(s) | 209, 1694 |
| HinfI | GANTC | 3 cut(s) | 16, 1162, 1833 |
| HpaII | CCGG | 3 cut(s) | 235, 666, 1657 |
| HphI | GGTGA | 8 cut(s) | 76, 133, 158, 178, 754, 893, 1502, 1811 |
| Hpy188I | TCNGA | 5 cut(s) | 469, 516, 1161, 1614, 1994 |
| Hpy188III | TCNNGA | 7 cut(s) | 317, 595, 666, 1130, 1193, 1227, 1519 |
| HpyCH4III | ACNGT | 6 cut(s) | 443, 523, 532, 649, 719, 1048 |
| HpyCH4IV | ACGT | 1 cut(s) | 301 |
| HpyCH4V | TGCA | 9 cut(s) | 289, 761, 863, 1363, 1635, 1677, 1757, 1855, 1901 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 217, 869, 1034, 1511, 1593 |
| HpyF3I | CTNAG | 4 cut(s) | 513, 1235, 1285, 1533 |
| HpySE526I | ACGT | 1 cut(s) | 301 |
| HspAI | GCGC | 2 cut(s) | 209, 1694 |
| Kpn2I | TCCGGA | 1 cut(s) | 665 |
| KroI | GCCGGC | 1 cut(s) | 234 |
| KroNI | GCCGGC | 1 cut(s) | 236 |
| Kzo9I | GATC | 6 cut(s) | 319, 988, 1041, 1091, 1840, 1867 |
| LguI | GCTCTTC | 1 cut(s) | 1214 |
| LmnI | GCTCC | 3 cut(s) | 1034, 1398, 1932 |
| Lsp1109I | GCAGC | 3 cut(s) | 815, 958, 961 |
| LweI | GCATC | 6 cut(s) | 238, 813, 1422, 1664, 1686, 1888 |
| MaeI | CTAG | 6 cut(s) | 1271, 1409, 1437, 1709, 1809, 1892 |
| MaeII | ACGT | 1 cut(s) | 301 |
| MaeIII | GTNAC | 5 cut(s) | 353, 526, 643, 1475, 1555 |
| MalI | GATC | 6 cut(s) | 321, 990, 1043, 1093, 1842, 1869 |
| MboI | GATC | 6 cut(s) | 319, 988, 1041, 1091, 1840, 1867 |
| MboII | GAAGA | 8 cut(s) | 14, 37, 155, 571, 1201, 1334, 1744, 1877 |
| MflI | RGATCY | 2 cut(s) | 988, 1840 |
| MhlI | GDGCHC | 2 cut(s) | 1209, 1668 |
| MlsI | TGGCCA | 2 cut(s) | 1587, 1943 |
| MluCI | AATT | 9 cut(s) | 359, 430, 451, 600, 637, 850, 1153, 1218, 1464 |
| MluNI | TGGCCA | 2 cut(s) | 1587, 1943 |
| MlyI | GAGTC | 1 cut(s) | 10 |
| MmeI | TCCRAC | 2 cut(s) | 552, 913 |
| Mox20I | TGGCCA | 2 cut(s) | 1587, 1943 |
| Mph1103I | ATGCAT | 1 cut(s) | 1679 |
| MroI | TCCGGA | 1 cut(s) | 665 |
| MroNI | GCCGGC | 1 cut(s) | 234 |
| MscI | TGGCCA | 2 cut(s) | 1587, 1943 |
| MseI | TTAA | 8 cut(s) | 107, 345, 362, 534, 816, 1265, 1779, 1923 |
| MslI | CAYNNNNRTG | 4 cut(s) | 396, 795, 1170, 1685 |
| Msp20I | TGGCCA | 2 cut(s) | 1587, 1943 |
| MspI | CCGG | 3 cut(s) | 235, 666, 1657 |
| MspR9I | CCNGG | 2 cut(s) | 1657, 1948 |
| Mva1269I | GAATGC | 2 cut(s) | 1311, 1372 |
| MvaI | CCWGG | 1 cut(s) | 1948 |
| MvnI | CGCG | 2 cut(s) | 209, 1696 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 217, 869, 1034, 1511, 1593 |
| NaeI | GCCGGC | 1 cut(s) | 236 |
| NciI | CCSGG | 1 cut(s) | 1657 |
| NdeII | GATC | 6 cut(s) | 319, 988, 1041, 1091, 1840, 1867 |
| NgoMIV | GCCGGC | 1 cut(s) | 234 |
| NmuCI | GTSAC | 1 cut(s) | 1475 |
| NsiI | ATGCAT | 1 cut(s) | 1679 |
| NspI | RCATGY | 1 cut(s) | 1584 |
| PceI | AGGCCT | 1 cut(s) | 96 |
| PciSI | GCTCTTC | 1 cut(s) | 1214 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 851 |
| PctI | GAATGC | 2 cut(s) | 1311, 1372 |
| PdiI | GCCGGC | 1 cut(s) | 236 |
| PfeI | GAWTC | 2 cut(s) | 1162, 1833 |
| PkrI | GCNGC | 4 cut(s) | 805, 973, 976, 1280 |
| PleI | GAGTC | 1 cut(s) | 10 |
| PpsI | GAGTC | 1 cut(s) | 10 |
| PshBI | ATTAAT | 2 cut(s) | 362, 1265 |
| PsiI | TTATAA | 1 cut(s) | 423 |
| Psp124BI | GAGCTC | 1 cut(s) | 1209 |
| Psp6I | CCWGG | 1 cut(s) | 1946 |
| PspFI | CCCAGC | 2 cut(s) | 78, 872 |
| PspGI | CCWGG | 1 cut(s) | 1946 |
| PspPI | GGNCC | 3 cut(s) | 219, 229, 308 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 511, 543 |
| PstI | CTGCAG | 1 cut(s) | 1365 |
| PstNI | CAGNNNCTG | 2 cut(s) | 295, 1031 |
| PsuI | RGATCY | 2 cut(s) | 988, 1840 |
| RsaI | GTAC | 6 cut(s) | 390, 776, 1359, 1385, 1622, 1643 |
| RsaNI | GTAC | 6 cut(s) | 389, 775, 1358, 1384, 1621, 1642 |
| RseI | CAYNNNNRTG | 4 cut(s) | 396, 795, 1170, 1685 |
| SacI | GAGCTC | 1 cut(s) | 1209 |
| SapI | GCTCTTC | 1 cut(s) | 1214 |
| SaqAI | TTAA | 8 cut(s) | 107, 345, 362, 534, 816, 1265, 1779, 1923 |
| SatI | GCNGC | 4 cut(s) | 804, 972, 975, 1279 |
| Sau3AI | GATC | 6 cut(s) | 319, 988, 1041, 1091, 1840, 1867 |
| Sau96I | GGNCC | 3 cut(s) | 219, 229, 308 |
| SchI | GAGTC | 1 cut(s) | 10 |
| ScrFI | CCNGG | 2 cut(s) | 1657, 1948 |
| SduI | GDGCHC | 2 cut(s) | 1209, 1668 |
| SfaNI | GCATC | 6 cut(s) | 238, 813, 1422, 1664, 1686, 1888 |
| SfcI | CTRYAG | 2 cut(s) | 1361, 1743 |
| SinI | GGWCC | 1 cut(s) | 229 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 396, 795, 1170, 1685 |
| Sse9I | AATT | 9 cut(s) | 359, 430, 451, 600, 637, 850, 1153, 1218, 1464 |
| SseBI | AGGCCT | 1 cut(s) | 96 |
| SsiI | CCGC | 6 cut(s) | 177, 232, 1279, 1395, 1671, 1967 |
| SspI | AATATT | 1 cut(s) | 1888 |
| SspMI | CTAG | 6 cut(s) | 1271, 1409, 1437, 1709, 1809, 1892 |
| SstI | GAGCTC | 1 cut(s) | 1209 |
| StuI | AGGCCT | 1 cut(s) | 96 |
| StyD4I | CCNGG | 2 cut(s) | 1655, 1946 |
| TaaI | ACNGT | 6 cut(s) | 443, 523, 532, 649, 719, 1048 |
| TaiI | ACGT | 1 cut(s) | 304 |
| TaqI | TCGA | 3 cut(s) | 779, 854, 1176 |
| TasI | AATT | 9 cut(s) | 359, 430, 451, 600, 637, 850, 1153, 1218, 1464 |
| TatI | WGTACW | 3 cut(s) | 388, 774, 1357 |
| TauI | GCSGC | 1 cut(s) | 1281 |
| TfiI | GAWTC | 2 cut(s) | 1162, 1833 |
| Tru1I | TTAA | 8 cut(s) | 107, 345, 362, 534, 816, 1265, 1779, 1923 |
| Tru9I | TTAA | 8 cut(s) | 107, 345, 362, 534, 816, 1265, 1779, 1923 |
| TscAI | CASTG | 5 cut(s) | 768, 1051, 1071, 1673, 1857 |
| TseFI | GTSAC | 1 cut(s) | 1475 |
| TseI | GCWGC | 3 cut(s) | 803, 971, 974 |
| Tsp45I | GTSAC | 1 cut(s) | 1475 |
| TspRI | CASTG | 5 cut(s) | 768, 1051, 1071, 1673, 1857 |
| VpaK11BI | GGWCC | 1 cut(s) | 229 |
| VspI | ATTAAT | 2 cut(s) | 362, 1265 |
| XapI | RAATTY | 6 cut(s) | 430, 451, 600, 850, 1153, 1218 |
| XceI | RCATGY | 1 cut(s) | 1584 |
| XspI | CTAG | 6 cut(s) | 1271, 1409, 1437, 1709, 1809, 1892 |
| Zsp2I | ATGCAT | 1 cut(s) | 1679 |