Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Forward (+)

5624005 .. 5626640

Gene Structure 2636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0071700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGTACGTTTCAGAGGACTGTTCTTACTATGCCAGAAAATGGTATTGGATTGTTTCCAGACATAGGTTTTTCACATATAGCAGCACAAAGTCCAGGAGAAGGATCTGTTGGTGCTTCTCTTGGAATCACTGGGAAAAGAATTTCGACGCCATCGGATGCGCTATATGTTGGTCTTGGGACACATTTGGTGCCATCTCAAAATTTAGGTTCAGTAAAGGAGGCCCTTTTGTCAACTAACTTTTCCCAGGATCCACATGAGGACATCAAAACGATTTTGGCCAAGTTCAACAGTAATCCTGATTCTGAATCCCAACTGAAGCAGTTTTTACCTCAAATAACCTCATCATTTGGTGCAAATAAGTCAGTTATTGAGACAGTTGAAGAAGTGAAAAAGCATCAATCGAGTTCAGATGCTACTGTAAATGCTACTCATTTATCGGTGTGGAGTCGGCTAATGAAGCTCTTCAAGAGGTCTTGGAAATGGGGCTCCTTTTTCACTTTTCTTGACACAGAAAATCCAAAGTGGAACCCGTCAAGGTTGGAGGAAGTTAATGAGAGCGAAGTGGAAGCTCTGTTCGTACCATTGAGCCCAAACGTGGAGGAGTACTGTGACTGGCATTTGAAAATGAACACGAGACTGGTTGTGCATGCCATTGGAATATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

222

Amino Acids

24.57

Weight (kDa)

5.8

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	5 - 142	1e-25	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AccB7I	CCANNNNNTGG	1 cut(s)	41
AclWI	GGATC	3 cut(s)	112, 245, 258
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	2 cut(s)	141, 202
AcuI	CTGAAG	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	3 cut(s)	7, 582, 608
AfiI	CCNNNNNNNGG	4 cut(s)	41, 65, 101, 598
AgsI	TTSAA	4 cut(s)	289, 383, 469, 625
AjnI	CCWGG	2 cut(s)	94, 246
AjuI	GAANNNNNNNTTGG	4 cut(s)	30, 62, 93, 125
AloI	GAACNNNNNNTCC	2 cut(s)	560, 592
AluBI	AGCT	2 cut(s)	463, 572
AluI	AGCT	2 cut(s)	463, 572
Alw26I	GTCTC	2 cut(s)	368, 631
AlwI	GGATC	3 cut(s)	112, 245, 258
AoxI	GGCC	2 cut(s)	222, 279
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	2 cut(s)	141, 202
Asp700I	GAANNNNTTC	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	190
BanII	GRGCYC	2 cut(s)	491, 593
BauI	CACGAG	1 cut(s)	634
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	2 cut(s)	160, 202
BciT130I	CCWGG	2 cut(s)	96, 248
BcoDI	GTCTC	2 cut(s)	368, 631
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmcAI	AGTACT	1 cut(s)	608
Bme1390I	CCNGG	2 cut(s)	96, 248
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	4 cut(s)	192, 252, 490, 530
BmrFI	CCNGG	2 cut(s)	96, 248
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	3 cut(s)	148, 403, 406
BmuI	ACTGGG	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 65, 101, 598
Bse1I	ACTGG	3 cut(s)	136, 620, 645
BseBI	CCWGG	2 cut(s)	96, 248
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	4 cut(s)	41, 65, 101, 598
BseNI	ACTGG	3 cut(s)	136, 620, 645
BseRI	GAGGAG	1 cut(s)	617
BseXI	GCAGC	1 cut(s)	95
BshFI	GGCC	2 cut(s)	224, 281
BshNI	GGYRCC	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	4 cut(s)	41, 65, 101, 598
BsmAI	GTCTC	2 cut(s)	368, 631
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	224, 281
Bsp1286I	GDGCHC	2 cut(s)	491, 593
Bsp143I	GATC	2 cut(s)	104, 250
BspANI	GGCC	2 cut(s)	224, 281
BspLI	GGNNCC	4 cut(s)	192, 252, 490, 530
BspPI	GGATC	3 cut(s)	112, 245, 258
BspQI	GCTCTTC	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	190
BsrI	ACTGG	3 cut(s)	136, 620, 645
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	2 cut(s)	104, 250
BssNI	GRCGYC	1 cut(s)	149
BssSI	CACGAG	1 cut(s)	634
Bst2BI	CACGAG	1 cut(s)	634
Bst2UI	CCWGG	2 cut(s)	96, 248
Bst4CI	ACNGT	5 cut(s)	22, 293, 379, 421, 611
Bst6I	CTCTTC	1 cut(s)	470
BstACI	GRCGYC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	651
BstF5I	GGATG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	107, 253
BstMAI	GTCTC	2 cut(s)	368, 631
BstMBI	GATC	2 cut(s)	104, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstNI	CCWGG	2 cut(s)	96, 248
BstNSI	RCATGY	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	94, 246
BstV1I	GCAGC	1 cut(s)	95
BstX2I	RGATCY	2 cut(s)	104, 250
BstYI	RGATCY	2 cut(s)	104, 250
BsuRI	GGCC	2 cut(s)	224, 281
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	651
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	223
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	3 cut(s)	6, 581, 607
CviAII	CATG	2 cut(s)	257, 650
CviJI	RGCY	7 cut(s)	224, 281, 454, 463, 489, 572, 591
CviKI_1	RGCY	7 cut(s)	224, 281, 454, 463, 489, 572, 591
CviQI	GTAC	3 cut(s)	6, 581, 607
DpnI	GATC	2 cut(s)	106, 252
DpnII	GATC	2 cut(s)	104, 250
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Eco24I	GRGCYC	2 cut(s)	491, 593
Eco57I	CTGAAG	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	94, 246
EcoT38I	GRGCYC	2 cut(s)	491, 593
FaeI	CATG	2 cut(s)	260, 653
FaiI	YATR	9 cut(s)	32, 65, 78, 80, 166, 168, 258, 651, 664
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	256, 649
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	2 cut(s)	491, 593
Fsp4HI	GCNGC	1 cut(s)	84
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	224, 281
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	260, 653
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	4 cut(s)	126, 302, 308, 448
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	4 cut(s)	15, 157, 307, 412
Hpy188III	TCNNGA	4 cut(s)	59, 299, 469, 506
Hpy8I	GTNNAC	1 cut(s)	234
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	5 cut(s)	22, 293, 379, 421, 611
HpyCH4IV	ACGT	2 cut(s)	8, 597
HpyCH4V	TGCA	2 cut(s)	356, 649
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpySE526I	ACGT	2 cut(s)	8, 597
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	260, 653
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	104, 250
LguI	GCTCTTC	1 cut(s)	470
LmnI	GCTCC	1 cut(s)	494
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	3 cut(s)	148, 403, 406
MaeII	ACGT	2 cut(s)	8, 597
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	2 cut(s)	106, 252
MboI	GATC	2 cut(s)	104, 250
MboII	GAAGA	2 cut(s)	395, 457
MflI	RGATCY	2 cut(s)	104, 250
MhlI	GDGCHC	2 cut(s)	491, 593
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	2 cut(s)	141, 202
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	457
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	8 cut(s)	9, 214, 253, 342, 352, 465, 538, 595
Mox20I	TGGCCA	1 cut(s)	281
MroXI	GAANNNNTTC	1 cut(s)	464
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	1 cut(s)	552
Msp20I	TGGCCA	1 cut(s)	281
MspR9I	CCNGG	2 cut(s)	96, 248
MvaI	CCWGG	2 cut(s)	96, 248
MwoI	GCNNNNNNNGC	1 cut(s)	460
NdeII	GATC	2 cut(s)	104, 250
NlaIII	CATG	2 cut(s)	260, 653
NlaIV	GGNNCC	4 cut(s)	192, 252, 490, 530
NmuCI	GTSAC	1 cut(s)	611
NspI	RCATGY	1 cut(s)	653
PaeI	GCATGC	1 cut(s)	653
PciSI	GCTCTTC	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	464
PfeI	GAWTC	3 cut(s)	126, 302, 308
PflMI	CCANNNNNTGG	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	456
PpsI	GAGTC	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	94, 246
PspGI	CCWGG	2 cut(s)	94, 246
PspN4I	GGNNCC	4 cut(s)	192, 252, 490, 530
PspPI	GGNCC	1 cut(s)	223
PsuI	RGATCY	2 cut(s)	104, 250
RsaI	GTAC	3 cut(s)	7, 582, 608
RsaNI	GTAC	3 cut(s)	6, 581, 607
SapI	GCTCTTC	1 cut(s)	470
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	2 cut(s)	104, 250
Sau96I	GGNCC	1 cut(s)	223
ScaI	AGTACT	1 cut(s)	608
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	2 cut(s)	96, 248
SduI	GDGCHC	2 cut(s)	491, 593
SfaNI	GCATC	3 cut(s)	148, 403, 406
SphI	GCATGC	1 cut(s)	653
Sse9I	AATT	2 cut(s)	141, 202
StyD4I	CCNGG	2 cut(s)	94, 246
TaaI	ACNGT	5 cut(s)	22, 293, 379, 421, 611
TaiI	ACGT	2 cut(s)	11, 600
TaqI	TCGA	2 cut(s)	146, 404
TasI	AATT	2 cut(s)	141, 202
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	3 cut(s)	126, 302, 308
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	2 cut(s)	473, 644
TspRI	CASTG	1 cut(s)	136
Van91I	CCANNNNNTGG	1 cut(s)	41
XapI	RAATTY	2 cut(s)	141, 202
XceI	RCATGY	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	464
ZrmI	AGTACT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.