Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000441.1

Orthogroup ID

OG0001558

Physical Location & Seq

Genomic Coordinates Reverse (-)

38716 .. 39270

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000441.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

atgccatacacgagagcaaaaaggtctgcttcaccacagacctctgtctcacctgtcaaaggccgccgatcgagatcattgtcgaggtctagaaggagtcgttctaggagcccatctgtggatgcaaccaatcctggaaacaacttgtatgtaacaggcttatccacaagggttacctctgctgatgttgagaaattctttaacaaagaaggcaaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

73

Amino Acids

8.06

Weight (kDa)

11.78

Isoelectric Point (pI)

105.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785 AT4G35785
fragaria_vesca	FvH4_1g10991 FvH4_1g10991 FvH4_5g02820
malus_domestica	MD02G1123000.v1.1 MD06G1087700.v1.1 MD15G1237000.v1.1
prunus_persica	Prupe.5G103800_v2.0.a1 Prupe.5G103800_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1 Prupe.7G175500_v2.0.a1
pyrus_communis	pycom02g09590 pycom06g08380 pycom15g21080
rosa_chinensis	RchiOBHm_Chr2g0098261 RchiOBHm_Chr4g0436561 RchiOBHm_Chr5g0052501 RchiOBHm_Chr6g0253581 RchiOBHm_Chr7g0197131
rosa_laevigata	RLG00000016780
rosa_multiflora	Rmu_sc0000441.1_g000019 Rmu_sc0002754.1_g000021 Rmu_sc0009183.1_g000006 Rmu_ssc0000465.1_g000024
rosa_roxburghii	Rroxscaffold_2G00144110 Rroxscaffold_3G00258670
rosa_rugosa	Rorug02G0071700 Rorug07G0037800 Rorug07G0037900 Rorug07G0038000
rosa_samantha	Rh2AG118700 Rh2AG118800 Rh2DG123400 Rh3DG184500 Rh3DG353300 Rh6DG075300 Rh7AG162600 Rh7BG164600
rosa_wichuraiana	Rw0G023370 Rw1G013400 Rw4G028610 Rw5G028060 Rw7G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	59, 118
AjnI	CCWGG	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	24, 42
BanII	GRGCYC	1 cut(s)	113
BauI	CACGAG	1 cut(s)	10
BccI	CCATC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	2 cut(s)	90, 105
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	112
BoxI	GACNNNNGTC	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 118
Bse8I	GATNNNNATC	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	59, 118
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	59, 118
BsmAI	GTCTC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	68, 74
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	110
BssMI	GATC	2 cut(s)	68, 74
BssSI	CACGAG	1 cut(s)	10
Bst2BI	CACGAG	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	135
BstEII	GGTNACC	1 cut(s)	172
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	2 cut(s)	71, 77
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	2 cut(s)	68, 74
BstMCI	CGRYCG	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	135
BstPAI	GACNNNNGTC	1 cut(s)	44
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	127
CviJI	RGCY	3 cut(s)	63, 111, 159
CviKI_1	RGCY	3 cut(s)	63, 111, 159
DpnI	GATC	2 cut(s)	70, 76
DpnII	GATC	2 cut(s)	68, 74
Eco24I	GRGCYC	1 cut(s)	113
Eco91I	GGTNACC	1 cut(s)	172
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoO65I	GGTNACC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	113
FaiI	YATR	3 cut(s)	7, 150, 220
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	2 cut(s)	90, 105
GluI	GCNGC	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	63
HinfI	GANTC	1 cut(s)	97
HphI	GGTGA	2 cut(s)	24, 42
Hpy188III	TCNNGA	2 cut(s)	72, 90
HpyAV	CCTTC	2 cut(s)	87, 203
HpyCH4V	TGCA	1 cut(s)	125
Kzo9I	GATC	2 cut(s)	68, 74
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	4 cut(s)	66, 120, 141, 147
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	2 cut(s)	90, 105
MaeIII	GTNAC	2 cut(s)	151, 172
MalI	GATC	2 cut(s)	70, 76
MboI	GATC	2 cut(s)	68, 74
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	3 cut(s)	52, 78, 187
MseI	TTAA	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	68, 74
NlaIV	GGNNCC	1 cut(s)	110
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	65
Ple19I	CGATCG	1 cut(s)	71
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PshAI	GACNNNNGTC	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	133
PspEI	GGTNACC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	110
PvuI	CGATCG	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	2 cut(s)	68, 74
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	6 cut(s)	26, 44, 55, 89, 179, 219
SfaNI	GCATC	1 cut(s)	112
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	2 cut(s)	90, 105
StyD4I	CCNGG	1 cut(s)	133
TaqI	TCGA	2 cut(s)	71, 83
TasI	AATT	1 cut(s)	194
TauI	GCSGC	1 cut(s)	66
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	1 cut(s)	194
XbaI	TCTAGA	1 cut(s)	89
XspI	CTAG	2 cut(s)	90, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.